Wall clock time and date at job start Sat Apr 11 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99844 * 2 1 4 4 H 1.48493 * 109.47120 * 240.00032 * 3 2 1 5 5 H 1.48503 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47086 * 120.00005 * 3 2 1 7 7 C 1.37876 * 120.00493 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00526 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99549 * 0.27797 * 7 2 1 10 10 H 1.09001 * 109.49777 * 299.72202 * 9 7 2 11 11 C 1.53040 * 109.49428 * 179.65692 * 9 7 2 12 12 C 1.53042 * 109.53459 * 178.68207 * 11 9 7 13 13 C 1.53192 * 109.31562 * 61.36782 * 12 11 9 14 14 N 1.46930 * 108.77294 * 305.36546 * 13 12 11 15 15 C 1.34776 * 120.62899 * 233.60754 * 14 13 12 16 16 O 1.21592 * 119.99938 * 174.77066 * 15 14 13 17 17 N 1.34772 * 119.99970 * 354.77390 * 15 14 13 18 18 C 1.46500 * 120.00206 * 184.98755 * 17 15 14 19 19 C 1.52998 * 109.47486 * 180.02562 * 18 17 15 20 20 C 1.50704 * 109.54142 * 59.82330 * 19 18 17 21 21 O 1.20821 * 119.99833 * 120.00220 * 20 19 18 22 22 O 1.34223 * 119.99943 * 299.99687 * 20 19 18 23 23 C 1.53180 * 109.54347 * 299.55765 * 19 18 17 24 24 C 1.53097 * 109.15994 * 297.11202 * 23 19 18 25 25 O 1.42903 * 109.41502 * 302.39337 * 24 23 19 26 26 C 1.42898 * 114.10302 * 61.15715 * 25 24 23 27 27 C 1.53098 * 109.41473 * 298.84480 * 26 25 24 28 28 C 1.46931 * 118.76620 * 53.58453 * 14 13 12 29 29 H 0.97001 * 120.00262 * 359.97438 * 1 2 3 30 30 H 1.08989 * 109.46343 * 298.70007 * 11 9 7 31 31 H 1.09006 * 109.45962 * 58.68016 * 11 9 7 32 32 H 1.09000 * 109.49720 * 181.31839 * 12 11 9 33 33 H 1.09004 * 109.49578 * 301.41071 * 12 11 9 34 34 H 1.09002 * 109.58435 * 65.14781 * 13 12 11 35 35 H 1.08998 * 109.58554 * 185.57632 * 13 12 11 36 36 H 0.96997 * 120.00313 * 4.99265 * 17 15 14 37 37 H 1.09004 * 109.47132 * 300.00032 * 18 17 15 38 38 H 1.09002 * 109.47401 * 59.99878 * 18 17 15 39 39 H 0.96705 * 116.99905 * 179.97438 * 22 20 19 40 40 H 1.08999 * 109.52207 * 57.01412 * 23 19 18 41 41 H 1.08993 * 109.52115 * 177.20923 * 23 19 18 42 42 H 1.08998 * 109.47404 * 182.40747 * 24 23 19 43 43 H 1.09000 * 109.49059 * 62.38048 * 24 23 19 44 44 H 1.08995 * 109.48472 * 178.86166 * 26 25 24 45 45 H 1.08999 * 109.48818 * 58.82729 * 26 25 24 46 46 H 1.08997 * 109.52066 * 297.69705 * 27 26 25 47 47 H 1.09003 * 109.57408 * 177.54058 * 27 26 25 48 48 H 1.09002 * 109.61511 * 186.64338 * 28 14 13 49 49 H 1.08995 * 109.56060 * 66.21497 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0052 10 1 0.6243 -2.5612 0.8844 11 6 2.2452 -3.6627 -0.0120 12 6 1.4812 -4.9885 0.0154 13 6 0.6047 -5.0942 -1.2366 14 7 -0.2540 -3.9045 -1.3144 15 6 -1.5905 -4.0291 -1.4358 16 8 -2.2985 -3.0411 -1.4036 17 7 -2.1421 -5.2486 -1.5927 18 6 -3.5815 -5.3761 -1.8339 19 6 -3.9462 -6.8553 -1.9741 20 6 -3.5795 -7.5870 -0.7087 21 8 -4.4334 -8.1559 -0.0708 22 8 -2.3042 -7.6068 -0.2904 23 6 -3.1849 -7.4609 -3.1574 24 6 -3.6228 -6.7621 -4.4472 25 8 -5.0364 -6.8993 -4.6054 26 6 -5.8014 -6.3099 -3.5522 27 6 -5.4510 -6.9904 -2.2263 28 6 0.3714 -2.5762 -1.2570 29 1 -0.4850 0.8400 0.0004 30 1 2.8554 -3.6138 -0.9137 31 1 2.8881 -3.5962 0.8658 32 1 2.1900 -5.8165 0.0342 33 1 0.8519 -5.0275 0.9045 34 1 1.2377 -5.1465 -2.1224 35 1 -0.0150 -5.9887 -1.1743 36 1 -1.5861 -6.0421 -1.5459 37 1 -4.1298 -4.9449 -0.9963 38 1 -3.8444 -4.8482 -2.7506 39 1 -2.1177 -8.0887 0.5270 40 1 -2.1139 -7.3196 -3.0121 41 1 -3.4067 -8.5258 -3.2266 42 1 -3.1158 -7.2180 -5.2976 43 1 -3.3640 -5.7046 -4.3939 44 1 -6.8639 -6.4399 -3.7579 45 1 -5.5713 -5.2465 -3.4868 46 1 -5.7186 -8.0458 -2.2768 47 1 -6.0006 -6.5137 -1.4147 48 1 -0.4019 -1.8095 -1.2079 49 1 0.9849 -2.4230 -2.1447 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605517.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:43 Heat of formation + Delta-G solvation = -191.591659 kcal Electronic energy + Delta-G solvation = -31995.056087 eV Core-core repulsion = 27727.952696 eV Total energy + Delta-G solvation = -4267.103391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34890 -41.06702 -40.06857 -38.47837 -37.27639 -36.62792 -35.33219 -34.11980 -33.19109 -32.19208 -31.45743 -28.48861 -27.08142 -26.66903 -25.48624 -24.64341 -23.41589 -23.24041 -21.70980 -20.63122 -20.14108 -19.30302 -18.77236 -18.26430 -18.18253 -17.33387 -17.02873 -16.89626 -16.54211 -16.45899 -16.17028 -15.89306 -15.46565 -15.26402 -15.17556 -14.83616 -14.63268 -14.45800 -14.26638 -14.13260 -13.91703 -13.54035 -13.44902 -13.37886 -12.83790 -12.71073 -12.67107 -12.56129 -12.40324 -12.25427 -12.22724 -11.90930 -11.80008 -11.78539 -11.60034 -11.34526 -11.20929 -10.92263 -10.81065 -10.57893 -10.48718 -10.15722 -9.23037 -8.07429 -6.25148 1.02877 1.42416 1.43656 1.52096 1.74386 1.89247 2.25512 2.43745 2.91563 2.99725 3.21116 3.27963 3.39610 3.56170 3.88568 4.02807 4.09212 4.17500 4.19209 4.21037 4.31911 4.46511 4.49870 4.58667 4.61376 4.63851 4.71644 4.76506 4.78388 4.84191 4.88866 4.97511 5.01034 5.08963 5.13718 5.29133 5.30051 5.34351 5.45016 5.53121 5.58962 5.68454 5.92751 6.01033 6.18681 6.19388 6.38901 6.86375 6.88256 7.16337 7.44883 7.70134 8.95174 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.003061 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.543741 B = 9143.967395 C = 9814.644143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.038 3.962 10 H -0.017 1.017 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.109 3.891 14 N -0.625 5.625 15 C 0.694 3.306 16 O -0.639 6.639 17 N -0.727 5.727 18 C 0.148 3.852 19 C -0.056 4.056 20 C 0.497 3.503 21 O -0.537 6.537 22 O -0.508 6.508 23 C -0.137 4.137 24 C 0.056 3.944 25 O -0.391 6.391 26 C 0.056 3.944 27 C -0.129 4.129 28 C 0.143 3.857 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.412 0.588 37 H 0.052 0.948 38 H 0.082 0.918 39 H 0.431 0.569 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.050 0.950 44 H 0.120 0.880 45 H 0.055 0.945 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 -21.223 -7.435 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.080 0.920 9 C 0.019 3.981 10 H 0.001 0.999 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.013 4.013 14 N -0.361 5.361 15 C 0.395 3.605 16 O -0.521 6.521 17 N -0.391 5.391 18 C 0.023 3.977 19 C -0.057 4.057 20 C 0.340 3.660 21 O -0.426 6.426 22 O -0.322 6.322 23 C -0.175 4.175 24 C -0.020 4.020 25 O -0.310 6.310 26 C -0.020 4.020 27 C -0.167 4.167 28 C 0.020 3.980 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.294 0.706 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.139 0.861 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.073 0.927 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.198 -20.460 -7.760 22.744 hybrid contribution 0.610 0.980 1.352 1.778 sum -5.588 -19.480 -6.408 21.255 Atomic orbital electron populations 1.70101 1.07408 1.27211 1.50529 1.25888 0.95509 1.02864 0.94642 0.85642 0.78273 0.78862 0.79077 1.19068 1.21605 1.19448 1.21508 0.93287 0.91574 1.51233 0.91965 1.18908 0.93091 0.93756 0.92369 0.99930 1.21503 0.97618 0.94230 1.00890 1.21899 0.98947 0.98175 0.97274 1.21880 0.93563 0.86630 0.99188 1.47648 1.03984 1.08913 1.75522 1.16155 0.82555 0.83745 0.77998 1.90902 1.61764 1.39088 1.60326 1.45110 1.08900 1.06550 1.78492 1.21205 0.80972 0.93430 1.02119 1.20894 0.99497 0.93569 0.91774 1.23222 0.80157 0.76741 0.85925 1.90718 1.51019 1.43860 1.57032 1.84357 1.28721 1.71692 1.47421 1.22274 1.01101 1.01633 0.92473 1.22745 0.81427 1.00006 0.97815 1.87941 1.17766 1.79177 1.46089 1.22788 0.97653 0.96277 0.85301 1.22112 0.90888 1.04103 0.99632 1.21571 0.96795 0.82023 0.97601 0.93234 0.92266 0.93194 0.87671 0.93404 0.89973 0.88238 0.74555 0.92914 0.90017 0.70579 0.88402 0.88743 0.86132 0.93208 0.86167 0.92675 0.89069 0.89658 0.90649 0.94544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.07 11.39 21.45 0.24 -55.82 16 2 C 0.01 0.59 5.30 84.65 0.45 1.04 16 3 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.57 8.57 25.60 0.22 -29.35 16 8 H 0.06 3.27 7.74 -2.92 -0.02 3.25 16 9 C 0.04 1.92 2.25 -11.46 -0.03 1.89 16 10 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 16 11 C -0.10 -3.94 5.11 30.62 0.16 -3.78 16 12 C -0.12 -3.49 6.08 30.67 0.19 -3.30 16 13 C 0.11 2.91 6.39 86.36 0.55 3.46 16 14 N -0.63 -24.44 2.97 -836.89 -2.49 -26.93 16 15 C 0.69 27.89 8.29 179.06 1.49 29.38 16 16 O -0.64 -33.09 15.77 -4.01 -0.06 -33.15 16 17 N -0.73 -19.88 4.66 -478.53 -2.23 -22.10 16 18 C 0.15 3.61 4.01 86.38 0.35 3.96 16 19 C -0.06 -0.99 0.50 -52.81 -0.03 -1.02 16 20 C 0.50 9.54 6.92 71.24 0.49 10.04 16 21 O -0.54 -13.26 16.73 21.98 0.37 -12.89 16 22 O -0.51 -7.08 10.97 -51.35 -0.56 -7.64 16 23 C -0.14 -1.85 4.73 30.69 0.15 -1.70 16 24 C 0.06 0.84 6.57 72.01 0.47 1.31 16 25 O -0.39 -6.92 10.76 -148.98 -1.60 -8.52 16 26 C 0.06 0.87 6.57 72.02 0.47 1.34 16 27 C -0.13 -2.13 4.23 30.69 0.13 -2.00 16 28 C 0.14 7.10 5.41 86.36 0.47 7.56 16 29 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.85 8.14 -2.38 -0.02 1.84 16 32 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 1.92 5.65 -2.39 -0.01 1.90 16 36 H 0.41 8.68 2.84 -92.71 -0.26 8.41 16 37 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.08 2.05 5.01 -2.39 -0.01 2.04 16 39 H 0.43 2.78 9.10 -74.05 -0.67 2.11 16 40 H 0.10 1.13 6.83 -2.39 -0.02 1.12 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 42 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 0.87 6.60 -2.39 -0.02 0.86 16 44 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.06 0.92 6.61 -2.39 -0.02 0.91 16 46 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 4.54 5.11 -2.39 -0.01 4.52 16 49 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -80.44 374.53 1.27 -79.18 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.05 Total: 22.74 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 5.52 Total: 18.83 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -4.47 Total: -104.85 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -1.86 Total: -62.21 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -80.44 1.27 -79.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605517.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.415 kcal (2) G-P(sol) polarization free energy of solvation -80.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds