Wall clock time and date at job start Sat Apr 11 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 120.00059 * 2 1 4 4 H 1.48489 * 109.47118 * 240.00245 * 3 2 1 5 5 H 1.48501 * 109.46641 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46970 * 119.99769 * 3 2 1 7 7 C 1.37871 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00036 * 0.27476 * 7 2 1 10 10 C 1.53007 * 109.47212 * 179.72571 * 9 7 2 11 11 C 1.53001 * 109.47251 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47317 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99787 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.47077 * 120.87810 * 359.72361 * 14 12 11 16 16 C 1.53699 * 108.27668 * 128.75477 * 15 14 12 17 17 N 1.46904 * 109.25535 * 54.07931 * 16 15 14 18 18 C 1.46901 * 110.99792 * 172.60743 * 17 16 15 19 19 C 1.50694 * 110.45864 * 306.64841 * 18 17 16 20 20 O 1.20826 * 120.00493 * 144.34422 * 19 18 17 21 21 O 1.34236 * 120.00036 * 324.34175 * 19 18 17 22 22 C 1.54512 * 110.51056 * 69.25294 * 18 17 16 23 23 C 1.54477 * 104.06426 * 118.64191 * 22 18 17 24 24 O 1.44431 * 104.80124 * 23.97929 * 23 22 18 25 25 C 1.44427 * 105.27448 * 319.48669 * 24 23 22 26 26 C 1.46894 * 111.27064 * 296.75689 * 17 16 15 27 27 C 1.47083 * 120.88272 * 180.02562 * 14 12 11 28 28 H 0.97002 * 119.99480 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47359 * 299.72075 * 9 7 2 30 30 H 1.08998 * 109.47719 * 59.72335 * 9 7 2 31 31 H 1.08996 * 109.46938 * 299.99619 * 10 9 7 32 32 H 1.09003 * 109.47217 * 59.99980 * 10 9 7 33 33 H 1.09000 * 109.47048 * 300.00210 * 11 10 9 34 34 H 1.09003 * 109.46934 * 59.99919 * 11 10 9 35 35 H 1.09003 * 109.62902 * 248.51722 * 15 14 12 36 36 H 1.09001 * 109.63153 * 9.10601 * 15 14 12 37 37 H 1.08996 * 109.64603 * 294.07784 * 16 15 14 38 38 H 1.08998 * 109.44495 * 173.95964 * 16 15 14 39 39 H 0.96702 * 117.00098 * 179.97438 * 21 19 18 40 40 H 1.08997 * 110.51164 * 237.28953 * 22 18 17 41 41 H 1.08996 * 110.51206 * 359.97438 * 22 18 17 42 42 H 1.09000 * 110.37260 * 142.80470 * 23 22 18 43 43 H 1.08991 * 110.37570 * 265.04010 * 23 22 18 44 44 H 1.09000 * 110.36949 * 281.67740 * 25 24 23 45 45 H 1.09001 * 110.37228 * 159.34201 * 25 24 23 46 46 H 1.08998 * 109.49240 * 303.14817 * 26 17 16 47 47 H 1.08998 * 109.51639 * 183.07751 * 26 17 16 48 48 H 1.09001 * 109.62717 * 350.89489 * 27 14 12 49 49 H 1.08997 * 109.62464 * 111.47602 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0074 10 6 2.2453 -3.6620 -0.0135 11 6 1.4804 -4.9870 -0.0198 12 6 2.4596 -6.1325 -0.0264 13 8 3.6520 -5.9108 -0.0256 14 7 2.0104 -7.4031 -0.0332 15 6 0.5687 -7.6941 -0.0281 16 6 0.2713 -8.6769 -1.1718 17 7 1.1422 -9.8525 -1.0390 18 6 0.7717 -10.8940 -2.0066 19 6 -0.6951 -11.2204 -1.8933 20 8 -1.3309 -11.4962 -2.8830 21 8 -1.2954 -11.2048 -0.6927 22 6 1.1170 -10.4449 -3.4441 23 6 2.1423 -11.4936 -3.9290 24 8 1.8826 -12.6636 -3.1230 25 6 1.6294 -12.1609 -1.7929 26 6 2.5578 -9.4853 -1.1770 27 6 2.9489 -8.5356 -0.0391 28 1 -0.4849 0.8401 0.0004 29 1 0.6245 -2.5616 0.8823 30 1 0.6244 -2.5522 -0.8976 31 1 2.8719 -3.5996 -0.9031 32 1 2.8720 -3.6090 0.8768 33 1 0.8540 -5.0492 0.8701 34 1 0.8534 -5.0404 -0.9098 35 1 0.2888 -8.1418 0.9255 36 1 0.0084 -6.7717 -0.1813 37 1 0.4585 -8.1919 -2.1297 38 1 -0.7717 -8.9892 -1.1199 39 1 -2.2377 -11.4207 -0.6703 40 1 0.2272 -10.4613 -4.0734 41 1 1.5621 -9.4500 -3.4369 42 1 1.9860 -11.7175 -4.9842 43 1 3.1584 -11.1353 -3.7642 44 1 2.5669 -11.9057 -1.2989 45 1 1.0790 -12.8973 -1.2073 46 1 2.7131 -8.9890 -2.1349 47 1 3.1733 -10.3835 -1.1286 48 1 3.9630 -8.1699 -0.1996 49 1 2.8930 -9.0624 0.9135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:02 Heat of formation + Delta-G solvation = -154.122583 kcal Electronic energy + Delta-G solvation = -30807.928711 eV Core-core repulsion = 26542.450101 eV Total energy + Delta-G solvation = -4265.478610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87346 -40.10373 -39.42121 -37.81478 -36.56253 -34.96689 -34.27749 -32.29245 -31.47460 -31.36396 -30.08081 -28.06496 -26.59300 -25.45981 -23.85971 -23.56225 -23.12589 -21.84759 -20.55557 -19.95717 -18.89423 -18.51300 -17.82876 -17.36004 -16.73575 -16.35238 -16.23285 -16.08163 -15.67190 -15.64794 -15.49604 -15.12784 -14.78935 -14.43730 -14.06733 -13.93820 -13.73517 -13.45874 -13.28870 -12.84990 -12.70134 -12.38095 -12.29151 -12.11749 -12.01832 -11.87676 -11.72804 -11.61574 -11.59673 -11.43776 -11.35996 -11.03989 -10.80116 -10.60509 -10.56154 -10.28361 -9.69859 -9.69177 -9.28742 -9.14517 -9.04752 -8.65446 -8.33120 -5.99036 -4.00534 1.59848 2.39578 2.75514 2.83865 3.07366 3.35548 3.37934 3.39056 3.42808 3.81405 4.05316 4.30101 4.41961 4.46948 4.47740 4.52788 4.61383 4.76623 4.80701 4.88182 4.91185 4.96788 5.02468 5.14507 5.22532 5.25610 5.32323 5.37044 5.40958 5.46904 5.56771 5.63103 5.66382 5.73305 5.94418 6.01865 6.18672 6.27922 6.31770 6.42740 6.69419 6.90237 7.13226 7.38348 7.41573 7.68712 7.81479 8.01398 8.33168 8.45373 9.06276 9.63497 11.12435 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.002139 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.191330 B =13086.460079 C =13531.298691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.517 3.483 13 O -0.536 6.536 14 N -0.625 5.625 15 C 0.117 3.883 16 C 0.034 3.966 17 N -0.508 5.508 18 C 0.089 3.911 19 C 0.500 3.500 20 O -0.503 6.503 21 O -0.497 6.497 22 C -0.184 4.184 23 C 0.050 3.950 24 O -0.365 6.365 25 C 0.061 3.939 26 C 0.031 3.969 27 C 0.119 3.881 28 H 0.260 0.740 29 H 0.016 0.984 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.410 0.590 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.049 0.951 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.066 -28.387 -3.220 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.307 3.693 13 O -0.412 6.412 14 N -0.361 5.361 15 C -0.007 4.007 16 C -0.094 4.094 17 N -0.234 5.234 18 C -0.003 4.003 19 C 0.341 3.659 20 O -0.390 6.390 21 O -0.307 6.307 22 C -0.223 4.223 23 C -0.027 4.027 24 O -0.283 6.283 25 C -0.016 4.016 26 C -0.097 4.097 27 C -0.004 4.004 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.269 0.731 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.111 0.889 48 H 0.117 0.883 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.396 -28.521 -3.103 28.692 hybrid contribution -0.339 1.266 -0.760 1.515 sum -0.735 -27.255 -3.863 27.537 Atomic orbital electron populations 1.69953 1.06034 1.26667 1.51108 1.25016 0.94859 0.99241 0.95358 0.86652 0.79579 0.83061 0.78693 1.20239 1.21324 1.20205 1.21230 0.93150 0.91023 1.50304 0.92642 1.19119 0.93933 0.91443 0.97075 1.21457 0.98648 0.91506 1.01676 1.21875 0.98216 0.94132 1.03518 1.21297 0.90271 0.83339 0.74418 1.90671 1.17342 1.84092 1.49057 1.48310 1.06777 1.05788 1.75246 1.21876 0.81233 0.98984 0.98564 1.22747 0.97466 0.90487 0.98724 1.62136 1.04075 1.09717 1.47436 1.22291 0.89516 0.95869 0.92649 1.22638 0.89485 0.73070 0.80701 1.90754 1.65313 1.44424 1.38505 1.84645 1.30662 1.81864 1.33572 1.23704 1.02445 1.01025 0.95167 1.23402 0.97547 0.84795 0.96962 1.89218 1.91168 1.28592 1.19315 1.23489 0.98915 0.92901 0.86301 1.22774 0.88113 0.99739 0.99036 1.21591 0.94783 0.86143 0.97928 0.93001 0.96607 0.96678 0.92767 0.92663 0.89279 0.89511 0.90108 0.88364 0.93465 0.89331 0.73146 0.88140 0.88846 0.88209 0.91523 0.89245 0.87892 0.93245 0.88929 0.88325 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.09 -2.01 4.44 -26.73 -0.12 -2.13 16 11 C -0.14 -2.21 4.06 -27.88 -0.11 -2.32 16 12 C 0.52 8.02 7.71 -10.99 -0.08 7.94 16 13 O -0.54 -10.33 15.44 5.55 0.09 -10.24 16 14 N -0.63 -7.17 3.00 -172.15 -0.52 -7.69 16 15 C 0.12 1.03 6.53 -3.36 -0.02 1.01 16 16 C 0.03 0.27 4.99 -3.46 -0.02 0.25 16 17 N -0.51 -3.78 4.34 -217.88 -0.95 -4.73 16 18 C 0.09 0.67 0.70 -131.19 -0.09 0.58 16 19 C 0.50 4.26 5.75 36.00 0.21 4.46 16 20 O -0.50 -5.70 16.31 -18.75 -0.31 -6.01 16 21 O -0.50 -3.07 12.18 -39.27 -0.48 -3.55 16 22 C -0.18 -1.37 5.31 -25.16 -0.13 -1.51 16 23 C 0.05 0.34 7.63 37.93 0.29 0.63 16 24 O -0.37 -3.25 11.65 -35.23 -0.41 -3.66 16 25 C 0.06 0.43 6.67 37.93 0.25 0.68 16 26 C 0.03 0.23 4.89 -3.68 -0.02 0.21 16 27 C 0.12 1.13 6.60 -3.58 -0.02 1.11 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.09 1.30 7.99 -51.93 -0.41 0.88 16 34 H 0.09 1.26 7.67 -51.93 -0.40 0.86 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.84 6.02 -51.93 -0.31 0.53 16 37 H 0.05 0.41 7.17 -51.93 -0.37 0.04 16 38 H 0.09 0.66 6.03 -51.93 -0.31 0.34 16 39 H 0.41 0.90 9.10 45.56 0.41 1.31 16 40 H 0.10 0.88 6.75 -51.93 -0.35 0.53 16 41 H 0.09 0.67 5.32 -51.93 -0.28 0.39 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.50 5.67 -51.93 -0.29 0.21 16 45 H 0.10 0.67 7.87 -51.93 -0.41 0.26 16 46 H 0.05 0.40 6.36 -51.93 -0.33 0.07 16 47 H 0.09 0.52 5.76 -51.93 -0.30 0.22 16 48 H 0.10 1.08 7.06 -51.93 -0.37 0.72 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -36.04 381.73 -8.17 -44.20 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.64 Total: -2.41 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.42 Total: -2.37 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.73 Total: -38.60 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -1.11 Total: -23.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.04 -8.17 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.919 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds