Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 120.00059 * 2 1 4 4 H 1.48489 * 109.47118 * 240.00245 * 3 2 1 5 5 H 1.48501 * 109.46641 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46970 * 119.99769 * 3 2 1 7 7 C 1.37871 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00036 * 0.27476 * 7 2 1 10 10 C 1.53007 * 109.47212 * 179.72571 * 9 7 2 11 11 C 1.53001 * 109.47251 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47317 * 179.97438 * 11 10 9 13 13 O 1.21286 * 119.99787 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00197 * 180.02562 * 12 11 10 15 15 C 1.47077 * 120.87810 * 359.72361 * 14 12 11 16 16 C 1.53699 * 108.27668 * 128.75477 * 15 14 12 17 17 N 1.46904 * 109.25535 * 54.07931 * 16 15 14 18 18 C 1.46901 * 110.99792 * 172.60743 * 17 16 15 19 19 C 1.50694 * 110.45864 * 306.64841 * 18 17 16 20 20 O 1.20826 * 120.00493 * 144.34422 * 19 18 17 21 21 O 1.34236 * 120.00036 * 324.34175 * 19 18 17 22 22 C 1.54512 * 110.51056 * 69.25294 * 18 17 16 23 23 C 1.54477 * 104.06426 * 118.64191 * 22 18 17 24 24 O 1.44431 * 104.80124 * 23.97929 * 23 22 18 25 25 C 1.44427 * 105.27448 * 319.48669 * 24 23 22 26 26 C 1.46894 * 111.27064 * 296.75689 * 17 16 15 27 27 C 1.47083 * 120.88272 * 180.02562 * 14 12 11 28 28 H 0.97002 * 119.99480 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47359 * 299.72075 * 9 7 2 30 30 H 1.08998 * 109.47719 * 59.72335 * 9 7 2 31 31 H 1.08996 * 109.46938 * 299.99619 * 10 9 7 32 32 H 1.09003 * 109.47217 * 59.99980 * 10 9 7 33 33 H 1.09000 * 109.47048 * 300.00210 * 11 10 9 34 34 H 1.09003 * 109.46934 * 59.99919 * 11 10 9 35 35 H 1.09003 * 109.62902 * 248.51722 * 15 14 12 36 36 H 1.09001 * 109.63153 * 9.10601 * 15 14 12 37 37 H 1.08996 * 109.64603 * 294.07784 * 16 15 14 38 38 H 1.08998 * 109.44495 * 173.95964 * 16 15 14 39 39 H 0.96702 * 117.00098 * 179.97438 * 21 19 18 40 40 H 1.08997 * 110.51164 * 237.28953 * 22 18 17 41 41 H 1.08996 * 110.51206 * 359.97438 * 22 18 17 42 42 H 1.09000 * 110.37260 * 142.80470 * 23 22 18 43 43 H 1.08991 * 110.37570 * 265.04010 * 23 22 18 44 44 H 1.09000 * 110.36949 * 281.67740 * 25 24 23 45 45 H 1.09001 * 110.37228 * 159.34201 * 25 24 23 46 46 H 1.08998 * 109.49240 * 303.14817 * 26 17 16 47 47 H 1.08998 * 109.51639 * 183.07751 * 26 17 16 48 48 H 1.09001 * 109.62717 * 350.89489 * 27 14 12 49 49 H 1.08997 * 109.62464 * 111.47602 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0074 10 6 2.2453 -3.6620 -0.0135 11 6 1.4804 -4.9870 -0.0198 12 6 2.4596 -6.1325 -0.0264 13 8 3.6520 -5.9108 -0.0256 14 7 2.0104 -7.4031 -0.0332 15 6 0.5687 -7.6941 -0.0281 16 6 0.2713 -8.6769 -1.1718 17 7 1.1422 -9.8525 -1.0390 18 6 0.7717 -10.8940 -2.0066 19 6 -0.6951 -11.2204 -1.8933 20 8 -1.3309 -11.4962 -2.8830 21 8 -1.2954 -11.2048 -0.6927 22 6 1.1170 -10.4449 -3.4441 23 6 2.1423 -11.4936 -3.9290 24 8 1.8826 -12.6636 -3.1230 25 6 1.6294 -12.1609 -1.7929 26 6 2.5578 -9.4853 -1.1770 27 6 2.9489 -8.5356 -0.0391 28 1 -0.4849 0.8401 0.0004 29 1 0.6245 -2.5616 0.8823 30 1 0.6244 -2.5522 -0.8976 31 1 2.8719 -3.5996 -0.9031 32 1 2.8720 -3.6090 0.8768 33 1 0.8540 -5.0492 0.8701 34 1 0.8534 -5.0404 -0.9098 35 1 0.2888 -8.1418 0.9255 36 1 0.0084 -6.7717 -0.1813 37 1 0.4585 -8.1919 -2.1297 38 1 -0.7717 -8.9892 -1.1199 39 1 -2.2377 -11.4207 -0.6703 40 1 0.2272 -10.4613 -4.0734 41 1 1.5621 -9.4500 -3.4369 42 1 1.9860 -11.7175 -4.9842 43 1 3.1584 -11.1353 -3.7642 44 1 2.5669 -11.9057 -1.2989 45 1 1.0790 -12.8973 -1.2073 46 1 2.7131 -8.9890 -2.1349 47 1 3.1733 -10.3835 -1.1286 48 1 3.9630 -8.1699 -0.1996 49 1 2.8930 -9.0624 0.9135 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064919.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = -181.233934 kcal Electronic energy + Delta-G solvation = -30809.104347 eV Core-core repulsion = 26542.450101 eV Total energy + Delta-G solvation = -4266.654246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50235 -41.09081 -40.12340 -38.66087 -37.17426 -36.16035 -35.83038 -34.08948 -32.40583 -32.06825 -30.70232 -29.70024 -27.46807 -26.39458 -25.37986 -24.24463 -23.76245 -22.89366 -21.90403 -20.91205 -19.77282 -19.28216 -18.56291 -18.38238 -18.03414 -17.57213 -16.98968 -16.85203 -16.79967 -16.59878 -16.45081 -16.11443 -15.75306 -15.59012 -15.17810 -14.84847 -14.58233 -14.33651 -14.16345 -14.02027 -13.88022 -13.76807 -13.39485 -13.08873 -12.95917 -12.71474 -12.68211 -12.62385 -12.51954 -12.48929 -12.36640 -12.24428 -12.20503 -12.08020 -11.71166 -11.55765 -11.44471 -11.24844 -10.87373 -10.68014 -10.53808 -9.91044 -9.46736 -8.20108 -6.29925 0.95944 1.39748 1.42379 1.50457 1.61137 1.86627 1.91744 2.35842 2.41884 2.83723 3.12976 3.23949 3.48673 3.54582 3.75647 3.87025 3.90740 3.95070 4.07446 4.15576 4.18904 4.20725 4.26920 4.27843 4.38095 4.45302 4.51315 4.63172 4.66246 4.70812 4.76428 4.83086 4.84701 4.88046 4.95723 5.04167 5.09465 5.19411 5.36377 5.48858 5.50478 5.54671 5.71166 5.73829 5.75828 5.86856 6.26527 6.35380 6.85379 6.90898 7.16826 7.38715 8.91162 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020687 B = 0.002139 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.191330 B =13086.460079 C =13531.298691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.130 4.130 12 C 0.518 3.482 13 O -0.582 6.582 14 N -0.615 5.615 15 C 0.114 3.886 16 C 0.037 3.963 17 N -0.502 5.502 18 C 0.089 3.911 19 C 0.504 3.496 20 O -0.537 6.537 21 O -0.491 6.491 22 C -0.181 4.181 23 C 0.048 3.952 24 O -0.386 6.386 25 C 0.061 3.939 26 C 0.037 3.963 27 C 0.116 3.884 28 H 0.265 0.735 29 H 0.001 0.999 30 H 0.000 1.000 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.040 0.960 38 H 0.097 0.903 39 H 0.427 0.573 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.045 0.955 47 H 0.116 0.884 48 H 0.083 0.917 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -29.348 -2.801 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.119 4.119 11 C -0.169 4.169 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.349 5.349 15 C -0.009 4.009 16 C -0.092 4.092 17 N -0.228 5.228 18 C -0.003 4.003 19 C 0.346 3.654 20 O -0.427 6.427 21 O -0.304 6.304 22 C -0.220 4.220 23 C -0.028 4.028 24 O -0.305 6.305 25 C -0.016 4.016 26 C -0.090 4.090 27 C -0.006 4.006 28 H 0.073 0.927 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.115 0.885 39 H 0.289 0.711 40 H 0.102 0.898 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.063 0.937 47 H 0.134 0.866 48 H 0.101 0.899 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.330 -29.531 -2.666 29.653 hybrid contribution -0.448 1.502 -0.857 1.787 sum -0.778 -28.029 -3.523 28.260 Atomic orbital electron populations 1.70057 1.07469 1.27839 1.51553 1.25891 0.95816 1.03008 0.94704 0.85579 0.78418 0.78482 0.79063 1.19462 1.20399 1.19410 1.21668 0.93336 0.92845 1.50770 0.93086 1.19002 0.94161 0.92309 0.95496 1.21157 0.97600 0.92962 1.00217 1.21698 0.98039 0.91843 1.05326 1.21038 0.89253 0.84492 0.74422 1.90657 1.18892 1.84941 1.51657 1.48288 1.08404 1.04943 1.73222 1.22091 0.79409 0.99640 0.99740 1.22710 0.98088 0.90434 0.97936 1.62131 1.03961 1.09387 1.47330 1.22297 0.89281 0.96130 0.92575 1.22774 0.89727 0.72208 0.80678 1.90748 1.66109 1.46134 1.39673 1.84606 1.32238 1.81280 1.32264 1.23647 1.01999 1.01409 0.94982 1.23521 0.98158 0.84092 0.97068 1.89197 1.91342 1.29664 1.20269 1.23606 0.99597 0.92575 0.85820 1.22738 0.88391 1.00111 0.97768 1.21734 0.93653 0.85640 0.99578 0.92661 0.98029 0.98130 0.94221 0.94108 0.87447 0.87729 0.88574 0.87958 0.94131 0.88480 0.71101 0.89754 0.88571 0.87817 0.89833 0.87530 0.87484 0.93701 0.86603 0.89852 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.08 -3.51 4.44 30.60 0.14 -3.37 16 11 C -0.13 -4.06 4.06 29.85 0.12 -3.94 16 12 C 0.52 15.74 7.71 87.66 0.68 16.41 16 13 O -0.58 -22.61 15.44 -3.05 -0.05 -22.65 16 14 N -0.61 -13.07 3.00 -816.96 -2.45 -15.53 16 15 C 0.11 1.73 6.53 86.50 0.57 2.30 16 16 C 0.04 0.50 4.99 86.54 0.43 0.93 16 17 N -0.50 -6.24 4.34 -843.23 -3.66 -9.90 16 18 C 0.09 1.18 0.70 3.80 0.00 1.18 16 19 C 0.50 7.81 5.75 71.23 0.41 8.22 16 20 O -0.54 -11.83 16.31 21.97 0.36 -11.47 16 21 O -0.49 -4.98 12.18 -51.48 -0.63 -5.61 16 22 C -0.18 -2.49 5.31 31.61 0.17 -2.32 16 23 C 0.05 0.59 7.63 72.48 0.55 1.14 16 24 O -0.39 -6.27 11.65 -148.98 -1.74 -8.01 16 25 C 0.06 0.72 6.67 72.48 0.48 1.21 16 26 C 0.04 0.46 4.89 86.40 0.42 0.88 16 27 C 0.12 2.00 6.60 86.36 0.57 2.57 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.11 2.98 7.99 -2.39 -0.02 2.96 16 34 H 0.10 2.91 7.67 -2.39 -0.02 2.89 16 35 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 1.51 6.02 -2.39 -0.01 1.49 16 37 H 0.04 0.63 7.17 -2.39 -0.02 0.61 16 38 H 0.10 1.21 6.03 -2.39 -0.01 1.19 16 39 H 0.43 0.97 9.10 -74.06 -0.67 0.29 16 40 H 0.08 1.46 6.75 -2.39 -0.02 1.44 16 41 H 0.10 1.25 5.32 -2.39 -0.01 1.24 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.87 5.67 -2.39 -0.01 0.85 16 45 H 0.11 1.17 7.87 -2.39 -0.02 1.15 16 46 H 0.04 0.63 6.36 -2.39 -0.02 0.61 16 47 H 0.12 0.92 5.76 -2.39 -0.01 0.91 16 48 H 0.08 1.76 7.06 -2.39 -0.02 1.74 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -78.43 381.73 -0.16 -78.60 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.31 Total: 7.70 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 5.38 Total: -4.30 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -5.83 Total: -81.17 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.05 Total: -47.74 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -78.43 -0.16 -78.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064919.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.637 kcal (2) G-P(sol) polarization free energy of solvation -78.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds