Wall clock time and date at job start Sat Apr 11 2020 06:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99470 * 2 1 4 4 H 1.48505 * 109.46964 * 269.99682 * 3 2 1 5 5 H 1.48492 * 109.47074 * 30.00537 * 3 2 1 6 6 H 1.48509 * 109.46823 * 150.00353 * 3 2 1 7 7 C 1.38812 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99733 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00377 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46915 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47096 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00250 * 180.02562 * 13 12 11 15 15 C 1.53039 * 109.45961 * 209.99809 * 14 13 12 16 16 C 1.53196 * 109.33748 * 178.60937 * 15 14 13 17 17 N 1.46992 * 108.73878 * 54.61838 * 16 15 14 18 18 C 1.34784 * 120.60795 * 126.38575 * 17 16 15 19 19 O 1.21283 * 119.99359 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00259 * 0.02599 * 18 17 16 21 21 H 1.08999 * 115.55441 * 34.27759 * 20 18 17 22 22 C 1.53006 * 117.49710 * 248.60398 * 20 18 17 23 23 C 1.53002 * 60.00164 * 252.51010 * 22 20 18 24 24 H 1.08998 * 117.49747 * 107.48581 * 23 22 20 25 25 C 1.50696 * 117.50191 * 252.51196 * 23 22 20 26 26 O 1.20819 * 120.00014 * 68.62039 * 25 23 22 27 27 O 1.34232 * 120.00035 * 248.62051 * 25 23 22 28 28 C 1.46922 * 118.75940 * 306.41163 * 17 16 15 29 29 C 1.53042 * 109.45073 * 89.93108 * 14 13 12 30 30 H 0.96996 * 120.00295 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99441 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47177 * 59.99655 * 10 9 7 33 33 H 1.08998 * 109.47053 * 300.00050 * 10 9 7 34 34 H 1.08997 * 109.47182 * 59.99897 * 11 10 9 35 35 H 1.09002 * 109.47272 * 299.99578 * 11 10 9 36 36 H 1.08997 * 109.47237 * 59.99983 * 12 11 10 37 37 H 1.09004 * 109.47240 * 299.99542 * 12 11 10 38 38 H 1.09006 * 109.45599 * 329.97105 * 14 13 12 39 39 H 1.09002 * 109.49756 * 298.57661 * 15 14 13 40 40 H 1.09000 * 109.49883 * 58.64404 * 15 14 13 41 41 H 1.09001 * 109.58261 * 174.43824 * 16 15 14 42 42 H 1.08996 * 109.58319 * 294.86146 * 16 15 14 43 43 H 1.08998 * 117.49914 * 0.02562 * 22 20 18 44 44 H 1.08999 * 117.49844 * 145.00129 * 22 20 18 45 45 H 0.96691 * 117.00448 * 179.97438 * 27 25 23 46 46 H 1.09004 * 109.58306 * 293.82373 * 28 17 16 47 47 H 1.08994 * 109.70589 * 173.46329 * 28 17 16 48 48 H 1.08992 * 109.50305 * 301.33468 * 29 14 13 49 49 H 1.08998 * 109.49487 * 61.40079 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3881 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 6 1.0641 -4.8197 -0.0022 12 6 1.8292 -6.1446 -0.0029 13 8 0.9007 -7.2309 -0.0041 14 6 1.5153 -8.5210 -0.0042 15 6 0.6069 -9.5184 -0.7268 16 6 1.2839 -10.8923 -0.7557 17 7 1.6300 -11.2773 0.6201 18 6 1.2251 -12.4598 1.1243 19 8 1.5167 -12.7660 2.2611 20 6 0.4103 -13.4015 0.2757 21 1 0.6497 -13.4028 -0.7877 22 6 -1.0510 -13.6239 0.6711 23 6 -0.0185 -14.7284 0.9054 24 1 0.2889 -14.9202 1.9334 25 6 -0.0772 -15.9376 0.0079 26 8 0.2084 -15.8363 -1.1616 27 8 -0.4470 -17.1272 0.5079 28 6 2.4250 -10.3487 1.4351 29 6 1.7349 -8.9809 1.4388 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0023 32 1 2.6843 -3.7148 0.8888 33 1 2.6856 -3.7140 -0.8911 34 1 0.4378 -4.7617 -0.8924 35 1 0.4371 -4.7622 0.8876 36 1 2.4558 -6.2028 0.8871 37 1 2.4559 -6.2019 -0.8929 38 1 2.4752 -8.4658 -0.5178 39 1 -0.3442 -9.5925 -0.1995 40 1 0.4316 -9.1777 -1.7472 41 1 0.6005 -11.6275 -1.1808 42 1 2.1899 -10.8406 -1.3595 43 1 -1.4230 -13.0887 1.5448 44 1 -1.7728 -13.7715 -0.1321 45 1 -0.4701 -17.8736 -0.1063 46 1 3.4240 -10.2526 1.0099 47 1 2.4968 -10.7244 2.4557 48 1 2.3627 -8.2581 1.9596 49 1 0.7732 -9.0596 1.9459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:51 Heat of formation + Delta-G solvation = -139.796110 kcal Electronic energy + Delta-G solvation = -28637.747487 eV Core-core repulsion = 24372.890119 eV Total energy + Delta-G solvation = -4264.857367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34847 -40.47615 -38.94048 -37.33649 -36.77089 -36.18490 -35.13665 -32.81847 -31.85037 -31.58321 -29.56609 -26.93009 -25.68704 -25.04468 -24.17401 -23.29608 -22.47737 -21.66735 -21.05073 -20.66875 -19.34877 -18.88685 -18.15676 -17.07451 -16.95146 -16.63399 -16.50893 -16.15283 -15.82976 -15.59982 -14.90890 -14.79713 -14.72724 -14.48028 -14.27772 -13.82718 -13.45743 -13.30496 -13.15001 -12.96636 -12.94367 -12.80504 -12.60906 -12.26825 -12.18254 -11.70481 -11.50567 -11.48249 -11.31260 -11.26111 -11.15138 -10.99357 -10.87135 -10.72282 -10.63779 -10.54407 -10.28638 -10.05360 -9.71015 -9.50089 -9.17597 -8.87325 -6.92547 -5.76004 -3.05250 1.42083 1.91697 2.14163 2.61027 3.12478 3.44022 3.47170 3.50409 3.52106 3.84133 3.87621 4.08052 4.29144 4.45298 4.48733 4.59019 4.62519 4.68237 4.78536 4.84224 4.93049 5.04058 5.04543 5.14366 5.21644 5.25484 5.27092 5.33087 5.38808 5.50746 5.57238 5.58533 5.61227 5.76856 5.88762 5.88840 6.00288 6.04550 6.09665 6.27194 6.36288 6.82300 6.85281 6.86358 7.24159 7.30092 7.64297 7.69794 8.42721 9.53719 10.11632 10.46406 11.46926 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039138 B = 0.001405 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.246293 B =19925.839525 C =20145.965408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.124 4.124 12 C 0.068 3.932 13 O -0.380 6.380 14 C 0.090 3.910 15 C -0.132 4.132 16 C 0.107 3.893 17 N -0.605 5.605 18 C 0.548 3.452 19 O -0.537 6.537 20 C -0.159 4.159 21 H 0.142 0.858 22 C -0.112 4.112 23 C -0.139 4.139 24 H 0.151 0.849 25 C 0.513 3.487 26 O -0.513 6.513 27 O -0.508 6.508 28 C 0.114 3.886 29 C -0.157 4.157 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.414 0.586 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 -35.291 -0.665 35.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.162 4.162 12 C -0.009 4.009 13 O -0.299 6.299 14 C 0.032 3.968 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.338 5.338 18 C 0.336 3.664 19 O -0.414 6.414 20 C -0.180 4.180 21 H 0.160 0.840 22 C -0.150 4.150 23 C -0.158 4.158 24 H 0.168 0.832 25 C 0.355 3.645 26 O -0.402 6.402 27 O -0.320 6.320 28 C -0.008 4.008 29 C -0.196 4.196 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.274 0.726 46 H 0.089 0.911 47 H 0.115 0.885 48 H 0.100 0.900 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.188 -34.930 -0.097 34.931 hybrid contribution 0.505 0.474 -0.521 0.866 sum 0.693 -34.456 -0.618 34.469 Atomic orbital electron populations 1.69664 1.05136 1.25683 1.57672 1.24757 0.95541 0.97733 1.02958 0.86171 0.78633 0.83747 0.77524 1.21689 1.21721 1.20747 1.19240 0.91058 0.84143 1.42835 0.91145 1.42336 1.05959 0.99908 1.89528 1.20511 0.93316 0.85488 0.97812 1.21668 0.99412 0.91840 1.03308 1.22539 0.91882 0.86593 0.99868 1.87943 1.33858 1.13111 1.94976 1.21982 0.96068 0.84059 0.94716 1.21988 0.99735 0.93062 1.02273 1.21871 1.00705 0.96714 0.82236 1.48037 1.53597 1.17513 1.14692 1.19409 0.79161 0.81354 0.86520 1.90719 1.56877 1.75093 1.18726 1.22359 0.98759 0.95422 1.01505 0.84027 1.23138 0.90142 0.97190 1.04512 1.21622 1.07466 0.85446 1.01275 0.83157 1.22165 0.72205 0.83733 0.86355 1.90741 1.45410 1.85656 1.18366 1.84498 1.80453 1.19519 1.47541 1.21628 0.93647 0.88198 0.97307 1.22452 1.02545 0.96262 0.98299 0.93482 0.78182 0.96352 0.96352 0.91188 0.91190 0.93408 0.93354 0.92021 0.90340 0.89511 0.88774 0.90629 0.86191 0.86588 0.72637 0.91066 0.88453 0.90050 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.73 -19.08 5.60 -59.92 -0.34 -19.41 16 10 C 0.16 3.18 6.26 -4.05 -0.03 3.15 16 11 C -0.12 -2.08 5.70 -26.73 -0.15 -2.23 16 12 C 0.07 0.90 5.75 37.16 0.21 1.11 16 13 O -0.38 -4.86 9.99 -35.23 -0.35 -5.21 16 14 C 0.09 0.83 2.57 -26.69 -0.07 0.76 16 15 C -0.13 -0.96 5.73 -26.61 -0.15 -1.11 16 16 C 0.11 0.60 6.30 -3.67 -0.02 0.58 16 17 N -0.61 -4.65 2.97 -172.72 -0.51 -5.16 16 18 C 0.55 4.87 7.48 -10.99 -0.08 4.79 16 19 O -0.54 -6.53 15.67 5.55 0.09 -6.44 16 20 C -0.16 -1.03 4.48 -91.77 -0.41 -1.44 16 21 H 0.14 0.81 6.35 -51.93 -0.33 0.48 16 22 C -0.11 -0.54 9.94 -26.73 -0.27 -0.80 16 23 C -0.14 -0.88 5.81 -91.77 -0.53 -1.41 16 24 H 0.15 1.02 7.67 -51.93 -0.40 0.62 16 25 C 0.51 3.52 8.11 36.00 0.29 3.81 16 26 O -0.51 -4.84 17.02 -18.74 -0.32 -5.16 16 27 O -0.51 -2.41 13.42 -39.26 -0.53 -2.94 16 28 C 0.11 0.91 6.43 -3.71 -0.02 0.88 16 29 C -0.16 -1.37 5.69 -26.61 -0.15 -1.52 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.59 7.84 -51.93 -0.41 0.18 16 37 H 0.05 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.38 5.68 -51.93 -0.29 0.08 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.41 0.20 9.10 45.56 0.41 0.61 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.88 7.01 -51.93 -0.36 0.52 16 48 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -36.34 405.07 -8.90 -45.24 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.12 Total: 4.32 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.63 Total: -0.98 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.12 Total: -52.43 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -1.11 Total: -19.75 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.34 -8.90 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.555 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds