Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99470 * 2 1 4 4 H 1.48505 * 109.46964 * 269.99682 * 3 2 1 5 5 H 1.48492 * 109.47074 * 30.00537 * 3 2 1 6 6 H 1.48509 * 109.46823 * 150.00353 * 3 2 1 7 7 C 1.38812 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99733 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00377 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47121 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46915 * 179.97438 * 11 10 9 13 13 O 1.42900 * 109.47096 * 180.02562 * 12 11 10 14 14 C 1.42902 * 114.00250 * 180.02562 * 13 12 11 15 15 C 1.53039 * 109.45961 * 209.99809 * 14 13 12 16 16 C 1.53196 * 109.33748 * 178.60937 * 15 14 13 17 17 N 1.46992 * 108.73878 * 54.61838 * 16 15 14 18 18 C 1.34784 * 120.60795 * 126.38575 * 17 16 15 19 19 O 1.21283 * 119.99359 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00259 * 0.02599 * 18 17 16 21 21 H 1.08999 * 115.55441 * 34.27759 * 20 18 17 22 22 C 1.53006 * 117.49710 * 248.60398 * 20 18 17 23 23 C 1.53002 * 60.00164 * 252.51010 * 22 20 18 24 24 H 1.08998 * 117.49747 * 107.48581 * 23 22 20 25 25 C 1.50696 * 117.50191 * 252.51196 * 23 22 20 26 26 O 1.20819 * 120.00014 * 68.62039 * 25 23 22 27 27 O 1.34232 * 120.00035 * 248.62051 * 25 23 22 28 28 C 1.46922 * 118.75940 * 306.41163 * 17 16 15 29 29 C 1.53042 * 109.45073 * 89.93108 * 14 13 12 30 30 H 0.96996 * 120.00295 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99441 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.47177 * 59.99655 * 10 9 7 33 33 H 1.08998 * 109.47053 * 300.00050 * 10 9 7 34 34 H 1.08997 * 109.47182 * 59.99897 * 11 10 9 35 35 H 1.09002 * 109.47272 * 299.99578 * 11 10 9 36 36 H 1.08997 * 109.47237 * 59.99983 * 12 11 10 37 37 H 1.09004 * 109.47240 * 299.99542 * 12 11 10 38 38 H 1.09006 * 109.45599 * 329.97105 * 14 13 12 39 39 H 1.09002 * 109.49756 * 298.57661 * 15 14 13 40 40 H 1.09000 * 109.49883 * 58.64404 * 15 14 13 41 41 H 1.09001 * 109.58261 * 174.43824 * 16 15 14 42 42 H 1.08996 * 109.58319 * 294.86146 * 16 15 14 43 43 H 1.08998 * 117.49914 * 0.02562 * 22 20 18 44 44 H 1.08999 * 117.49844 * 145.00129 * 22 20 18 45 45 H 0.96691 * 117.00448 * 179.97438 * 27 25 23 46 46 H 1.09004 * 109.58306 * 293.82373 * 28 17 16 47 47 H 1.08994 * 109.70589 * 173.46329 * 28 17 16 48 48 H 1.08992 * 109.50305 * 301.33468 * 29 14 13 49 49 H 1.08998 * 109.49487 * 61.40079 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3881 -0.0016 10 6 2.0583 -3.6567 -0.0016 11 6 1.0641 -4.8197 -0.0022 12 6 1.8292 -6.1446 -0.0029 13 8 0.9007 -7.2309 -0.0041 14 6 1.5153 -8.5210 -0.0042 15 6 0.6069 -9.5184 -0.7268 16 6 1.2839 -10.8923 -0.7557 17 7 1.6300 -11.2773 0.6201 18 6 1.2251 -12.4598 1.1243 19 8 1.5167 -12.7660 2.2611 20 6 0.4103 -13.4015 0.2757 21 1 0.6497 -13.4028 -0.7877 22 6 -1.0510 -13.6239 0.6711 23 6 -0.0185 -14.7284 0.9054 24 1 0.2889 -14.9202 1.9334 25 6 -0.0772 -15.9376 0.0079 26 8 0.2084 -15.8363 -1.1616 27 8 -0.4470 -17.1272 0.5079 28 6 2.4250 -10.3487 1.4351 29 6 1.7349 -8.9809 1.4388 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0023 32 1 2.6843 -3.7148 0.8888 33 1 2.6856 -3.7140 -0.8911 34 1 0.4378 -4.7617 -0.8924 35 1 0.4371 -4.7622 0.8876 36 1 2.4558 -6.2028 0.8871 37 1 2.4559 -6.2019 -0.8929 38 1 2.4752 -8.4658 -0.5178 39 1 -0.3442 -9.5925 -0.1995 40 1 0.4316 -9.1777 -1.7472 41 1 0.6005 -11.6275 -1.1808 42 1 2.1899 -10.8406 -1.3595 43 1 -1.4230 -13.0887 1.5448 44 1 -1.7728 -13.7715 -0.1321 45 1 -0.4701 -17.8736 -0.1063 46 1 3.4240 -10.2526 1.0099 47 1 2.4968 -10.7244 2.4557 48 1 2.3627 -8.2581 1.9596 49 1 0.7732 -9.0596 1.9459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = -165.071168 kcal Electronic energy + Delta-G solvation = -28638.843496 eV Core-core repulsion = 24372.890119 eV Total energy + Delta-G solvation = -4265.953376 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.90559 -41.06611 -39.72981 -38.01364 -37.47116 -36.84630 -36.70599 -34.30349 -32.99242 -32.26314 -31.23931 -27.55849 -26.94922 -25.93008 -24.98106 -24.08792 -23.88129 -22.46579 -22.11818 -21.40442 -19.92277 -19.43891 -19.12008 -18.69282 -17.77595 -17.29826 -17.19107 -16.83644 -16.64956 -16.58300 -16.32745 -15.71640 -15.44370 -15.35737 -15.25458 -15.06918 -14.92587 -14.49323 -14.15747 -13.81821 -13.61090 -13.42439 -13.32271 -13.26358 -12.90279 -12.84230 -12.65397 -12.46559 -12.40654 -12.27322 -12.11267 -12.05346 -11.96748 -11.84979 -11.75883 -11.69507 -11.67005 -11.49901 -10.97014 -10.94427 -10.39442 -9.81078 -9.02783 -7.96123 -5.26334 0.91947 1.31571 1.47925 1.50285 1.58805 1.63727 2.12580 2.50650 2.62462 2.68419 3.33804 3.37653 3.38246 3.63915 3.71948 3.82077 3.92827 3.98421 4.03671 4.09384 4.15612 4.27205 4.28060 4.32062 4.37173 4.45049 4.56697 4.59038 4.65087 4.70322 4.72983 4.78128 4.79445 4.81882 4.86250 4.88344 4.97252 5.14702 5.23792 5.33234 5.33761 5.44836 5.48585 5.52544 6.24985 6.25341 6.34188 6.93026 6.99736 7.31747 8.06998 8.30076 9.27677 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.039138 B = 0.001405 C = 0.001390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.246293 B =19925.839525 C =20145.965408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.978 3.022 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.079 0.921 9 N -0.750 5.750 10 C 0.155 3.845 11 C -0.113 4.113 12 C 0.077 3.923 13 O -0.399 6.399 14 C 0.084 3.916 15 C -0.128 4.128 16 C 0.109 3.891 17 N -0.605 5.605 18 C 0.544 3.456 19 O -0.578 6.578 20 C -0.162 4.162 21 H 0.153 0.847 22 C -0.094 4.094 23 C -0.148 4.148 24 H 0.142 0.858 25 C 0.520 3.480 26 O -0.542 6.542 27 O -0.506 6.506 28 C 0.117 3.883 29 C -0.150 4.150 30 H 0.252 0.748 31 H 0.373 0.627 32 H 0.025 0.975 33 H 0.027 0.973 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.432 0.568 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 -36.318 -1.681 36.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.383 4.383 8 H 0.097 0.903 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.151 4.151 12 C 0.000 4.000 13 O -0.319 6.319 14 C 0.026 3.974 15 C -0.166 4.166 16 C -0.013 4.013 17 N -0.336 5.336 18 C 0.333 3.667 19 O -0.458 6.458 20 C -0.183 4.183 21 H 0.171 0.829 22 C -0.131 4.131 23 C -0.167 4.167 24 H 0.160 0.840 25 C 0.364 3.636 26 O -0.433 6.433 27 O -0.320 6.320 28 C -0.006 4.006 29 C -0.189 4.189 30 H 0.061 0.939 31 H 0.205 0.795 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.132 0.868 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.153 0.847 45 H 0.295 0.705 46 H 0.106 0.894 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.154 -36.006 -1.129 36.042 hybrid contribution 0.214 0.684 -0.176 0.738 sum 1.368 -35.322 -1.305 35.373 Atomic orbital electron populations 1.69829 1.06761 1.26209 1.59318 1.25639 0.96443 1.01335 1.03432 0.85083 0.77688 0.79086 0.77542 1.21195 1.22118 1.19257 1.19687 0.91665 0.85298 1.41608 0.90341 1.42597 1.05724 1.01364 1.89577 1.20670 0.93852 0.84495 0.98145 1.21475 0.98595 0.92803 1.02240 1.22342 0.91338 0.85118 1.01158 1.87910 1.34543 1.14266 1.95163 1.22239 0.97178 0.82782 0.95179 1.21969 0.98987 0.93364 1.02273 1.22041 1.01893 0.96133 0.81202 1.48149 1.52968 1.17080 1.15440 1.19824 0.78871 0.81806 0.86215 1.90699 1.58515 1.76052 1.20549 1.22321 0.99604 0.94929 1.01430 0.82925 1.23257 0.89470 0.95416 1.04973 1.21614 1.08682 0.85667 1.00784 0.83997 1.22155 0.71435 0.84203 0.85806 1.90728 1.46942 1.86150 1.19459 1.84465 1.79772 1.19667 1.48121 1.21573 0.94435 0.87628 0.96929 1.22365 1.01699 0.96730 0.98086 0.93927 0.79521 0.95729 0.95467 0.92089 0.92462 0.92345 0.91772 0.90422 0.91394 0.88630 0.86804 0.88850 0.85973 0.84680 0.70506 0.89384 0.90005 0.90102 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.25 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 9 N -0.75 -39.19 5.60 -343.48 -1.92 -41.11 16 10 C 0.15 6.16 6.26 86.38 0.54 6.70 16 11 C -0.11 -3.72 5.70 30.59 0.17 -3.55 16 12 C 0.08 1.90 5.75 71.98 0.41 2.32 16 13 O -0.40 -9.65 9.99 -148.98 -1.49 -11.14 16 14 C 0.08 1.39 2.57 30.62 0.08 1.46 16 15 C -0.13 -1.59 5.73 30.67 0.18 -1.41 16 16 C 0.11 0.95 6.30 86.35 0.54 1.49 16 17 N -0.60 -8.49 2.97 -818.74 -2.43 -10.92 16 18 C 0.54 9.32 7.48 87.65 0.66 9.98 16 19 O -0.58 -14.29 15.67 -3.04 -0.05 -14.34 16 20 C -0.16 -1.88 4.48 -11.54 -0.05 -1.93 16 21 H 0.15 1.43 6.35 -2.39 -0.02 1.41 16 22 C -0.09 -0.75 9.94 30.60 0.30 -0.44 16 23 C -0.15 -1.76 5.81 -11.54 -0.07 -1.82 16 24 H 0.14 1.94 7.67 -2.39 -0.02 1.92 16 25 C 0.52 6.55 8.11 71.23 0.58 7.12 16 26 O -0.54 -9.57 17.02 21.99 0.37 -9.19 16 27 O -0.51 -4.13 13.42 -51.43 -0.69 -4.82 16 28 C 0.12 1.75 6.43 86.36 0.56 2.30 16 29 C -0.15 -2.49 5.69 30.67 0.17 -2.32 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.37 20.81 7.67 -92.71 -0.71 20.10 16 32 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 1.32 7.84 -2.39 -0.02 1.30 16 37 H 0.06 1.39 8.09 -2.38 -0.02 1.37 16 38 H 0.08 1.06 7.79 -2.38 -0.02 1.04 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 0.58 5.68 -2.39 -0.01 0.56 16 42 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.43 -0.25 9.10 -74.06 -0.67 -0.92 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 1.51 7.01 -2.39 -0.02 1.49 16 48 H 0.08 1.33 7.84 -2.39 -0.02 1.31 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -78.36 405.07 1.07 -77.29 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.41 Total: 23.44 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 5.38 Total: 2.53 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.08 Total: -112.00 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -1.85 Total: -39.50 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -78.36 1.07 -77.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.782 kcal (2) G-P(sol) polarization free energy of solvation -78.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds