Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47213 * 269.99790 * 3 2 1 5 5 H 1.48499 * 109.47341 * 29.99988 * 3 2 1 6 6 H 1.48502 * 109.47211 * 149.99881 * 3 2 1 7 7 C 1.38808 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00238 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47251 * 180.02562 * 11 10 9 13 13 O 1.42908 * 109.47223 * 179.97438 * 12 11 10 14 14 C 1.42893 * 114.00311 * 179.97438 * 13 12 11 15 15 C 1.53033 * 109.46334 * 270.06929 * 14 13 12 16 16 C 1.53189 * 109.31803 * 178.61105 * 15 14 13 17 17 N 1.46931 * 108.77583 * 54.63420 * 16 15 14 18 18 C 1.34774 * 120.63567 * 126.36651 * 17 16 15 19 19 O 1.21274 * 120.00375 * 180.02562 * 18 17 16 20 20 C 1.50707 * 119.99402 * 0.02776 * 18 17 16 21 21 H 1.08996 * 115.55108 * 304.23285 * 20 18 17 22 22 C 1.53001 * 117.49232 * 158.52303 * 20 18 17 23 23 C 1.53000 * 117.49656 * 89.90397 * 20 18 17 24 24 H 1.08997 * 117.49625 * 214.97591 * 23 20 18 25 25 C 1.50700 * 117.50014 * 359.97430 * 23 20 18 26 26 O 1.20824 * 120.00153 * 95.77208 * 25 23 20 27 27 O 1.34235 * 119.99959 * 275.77320 * 25 23 20 28 28 C 1.46925 * 118.73534 * 306.39918 * 17 16 15 29 29 C 1.53040 * 109.46217 * 149.99923 * 14 13 12 30 30 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99957 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.47063 * 60.00277 * 10 9 7 33 33 H 1.08996 * 109.47076 * 300.00060 * 10 9 7 34 34 H 1.09003 * 109.47336 * 59.99713 * 11 10 9 35 35 H 1.09003 * 109.47233 * 300.00209 * 11 10 9 36 36 H 1.08996 * 109.47146 * 299.99800 * 12 11 10 37 37 H 1.08998 * 109.47141 * 60.00108 * 12 11 10 38 38 H 1.09001 * 109.45924 * 30.02691 * 14 13 12 39 39 H 1.09001 * 109.49982 * 298.56834 * 15 14 13 40 40 H 1.09008 * 109.49872 * 58.66110 * 15 14 13 41 41 H 1.09001 * 109.58880 * 294.84847 * 16 15 14 42 42 H 1.08999 * 109.59008 * 174.42211 * 16 15 14 43 43 H 1.08989 * 117.50496 * 0.02562 * 22 20 18 44 44 H 1.09011 * 117.49322 * 145.02369 * 22 20 18 45 45 H 0.96702 * 116.99808 * 179.97438 * 27 25 23 46 46 H 1.09001 * 109.58543 * 293.81114 * 28 17 16 47 47 H 1.09006 * 109.70209 * 173.46382 * 28 17 16 48 48 H 1.09009 * 109.49836 * 301.33880 * 29 14 13 49 49 H 1.09000 * 109.49778 * 61.40413 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0027 11 6 1.0639 -4.8197 0.0031 12 6 1.8289 -6.1446 0.0050 13 8 0.9003 -7.2309 0.0059 14 6 1.5148 -8.5209 0.0071 15 6 1.7357 -8.9818 -1.4354 16 6 2.4259 -10.3494 -1.4304 17 7 1.6303 -11.2777 -0.6154 18 6 1.2260 -12.4605 -1.1193 19 8 0.5693 -13.2178 -0.4367 20 6 1.5899 -12.8419 -2.5312 21 1 1.2893 -12.1326 -3.3021 22 6 1.5643 -14.3291 -2.8899 23 6 2.9017 -13.6007 -2.7421 24 1 3.4638 -13.3907 -3.6520 25 6 3.7312 -13.9089 -1.5222 26 8 3.6310 -14.9836 -0.9793 27 8 4.5812 -12.9893 -1.0388 28 6 1.2833 -10.8917 0.7591 29 6 0.6059 -9.5180 0.7295 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 0.0023 32 1 2.6847 -3.7137 0.8928 33 1 2.6847 -3.7152 -0.8872 34 1 0.4375 -4.7626 -0.8871 35 1 0.4368 -4.7614 0.8928 36 1 2.4562 -6.2032 -0.8845 37 1 2.4549 -6.2015 0.8954 38 1 2.4743 -8.4656 0.5213 39 1 0.7744 -9.0613 -1.9432 40 1 2.3640 -8.2591 -1.9561 41 1 3.4246 -10.2531 -1.0044 42 1 2.4964 -10.7269 -2.4505 43 1 1.2839 -15.0314 -2.1051 44 1 1.2466 -14.5983 -3.8973 45 1 5.0916 -13.2327 -0.2543 46 1 2.1888 -10.8396 1.3636 47 1 0.6008 -11.6266 1.1860 48 1 0.4301 -9.1770 1.7498 49 1 -0.3449 -9.5921 0.2017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074716.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = -138.178583 kcal Electronic energy + Delta-G solvation = -29378.680514 eV Core-core repulsion = 25113.893288 eV Total energy + Delta-G solvation = -4264.787226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41695 -40.30504 -38.90242 -37.27911 -36.68189 -36.32953 -35.14105 -32.82659 -31.83856 -31.51485 -29.58180 -26.70415 -25.89877 -25.00349 -24.24877 -23.26520 -22.43582 -21.45669 -21.16995 -20.69762 -19.53468 -18.67077 -18.04198 -17.09132 -17.00303 -16.87204 -16.55956 -16.04531 -15.72291 -15.39703 -15.00157 -14.79095 -14.55404 -14.51515 -14.27662 -13.90983 -13.50296 -13.31060 -13.22321 -13.12244 -12.82333 -12.60831 -12.49380 -12.25733 -12.09472 -11.72015 -11.55931 -11.49736 -11.34317 -11.26397 -11.02152 -10.96450 -10.88455 -10.73683 -10.62389 -10.57447 -10.27399 -10.06261 -9.71903 -9.51325 -9.14596 -8.88277 -6.93474 -5.76795 -3.06109 1.53374 1.97690 2.25507 2.46162 3.02055 3.43163 3.46601 3.49751 3.51940 3.80488 3.93085 4.03639 4.31789 4.43763 4.51464 4.59032 4.62258 4.67432 4.77496 4.87187 4.99160 5.03228 5.10970 5.11381 5.16559 5.25150 5.32143 5.40302 5.44457 5.49218 5.56168 5.58233 5.61389 5.78430 5.87881 5.94571 5.99797 6.05539 6.09533 6.26340 6.35374 6.81419 6.85379 6.87246 7.24230 7.33926 7.65962 7.68813 8.41905 9.52838 10.10813 10.45529 11.46111 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027564 B = 0.001603 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.590588 B =17466.806816 C =17783.070860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.380 6.380 14 C 0.091 3.909 15 C -0.160 4.160 16 C 0.113 3.887 17 N -0.603 5.603 18 C 0.537 3.463 19 O -0.530 6.530 20 C -0.164 4.164 21 H 0.145 0.855 22 C -0.112 4.112 23 C -0.146 4.146 24 H 0.152 0.848 25 C 0.504 3.496 26 O -0.501 6.501 27 O -0.509 6.509 28 C 0.115 3.885 29 C -0.131 4.131 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.413 0.587 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 -31.060 -5.894 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.009 4.009 13 O -0.299 6.299 14 C 0.033 3.967 15 C -0.198 4.198 16 C -0.010 4.010 17 N -0.336 5.336 18 C 0.324 3.676 19 O -0.406 6.406 20 C -0.185 4.185 21 H 0.163 0.837 22 C -0.149 4.149 23 C -0.165 4.165 24 H 0.170 0.830 25 C 0.345 3.655 26 O -0.387 6.387 27 O -0.321 6.321 28 C -0.008 4.008 29 C -0.169 4.169 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.272 0.728 46 H 0.089 0.911 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.843 -31.499 -5.694 32.732 hybrid contribution 0.891 1.032 0.355 1.409 sum 7.734 -30.466 -5.339 31.883 Atomic orbital electron populations 1.69664 1.05133 1.25693 1.57638 1.24766 0.95560 0.97766 1.02983 0.86164 0.78613 0.83731 0.77513 1.21696 1.21726 1.20760 1.19234 0.91048 0.84132 1.42843 0.91139 1.42341 1.05970 0.99914 1.89524 1.20508 0.93305 0.85485 0.97790 1.21671 0.99419 0.91852 1.03325 1.22533 0.91879 0.86616 0.99836 1.87955 1.33852 1.13123 1.94964 1.21970 0.96115 0.84036 0.94605 1.22482 1.02447 0.96336 0.98573 1.21762 0.94467 0.88695 0.96057 1.48059 1.53364 1.17611 1.14583 1.19588 0.79461 0.81250 0.87312 1.90739 1.38765 1.50662 1.60429 1.22401 0.99997 0.98816 0.97308 0.83712 1.23188 0.93666 0.92891 1.05158 1.21815 0.89873 1.07891 0.96908 0.83034 1.22240 0.77710 0.81576 0.83961 1.90764 1.64577 1.24930 1.58466 1.84497 1.52831 1.46720 1.48003 1.21628 1.00641 0.96339 0.82152 1.21988 0.99687 0.93072 1.02196 0.93471 0.78176 0.96363 0.96366 0.91194 0.91190 0.93416 0.93374 0.92030 0.90449 0.89972 0.90455 0.89294 0.86280 0.85873 0.72767 0.91105 0.88419 0.89648 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 10 C 0.16 3.16 6.26 -4.04 -0.03 3.13 16 11 C -0.12 -2.07 5.70 -26.73 -0.15 -2.22 16 12 C 0.07 0.89 5.75 37.15 0.21 1.10 16 13 O -0.38 -4.88 9.99 -35.23 -0.35 -5.23 16 14 C 0.09 0.84 2.57 -26.69 -0.07 0.77 16 15 C -0.16 -1.19 5.69 -26.62 -0.15 -1.34 16 16 C 0.11 0.65 6.35 -3.71 -0.02 0.63 16 17 N -0.60 -4.73 2.97 -172.76 -0.51 -5.24 16 18 C 0.54 5.05 6.42 -10.98 -0.07 4.97 16 19 O -0.53 -7.09 15.90 5.56 0.09 -7.00 16 20 C -0.16 -0.95 4.44 -91.77 -0.41 -1.36 16 21 H 0.15 0.46 7.64 -51.93 -0.40 0.06 16 22 C -0.11 -0.62 9.55 -26.73 -0.26 -0.88 16 23 C -0.15 -0.74 6.29 -91.77 -0.58 -1.32 16 24 H 0.15 0.30 8.14 -51.93 -0.42 -0.12 16 25 C 0.50 3.90 7.02 36.01 0.25 4.15 16 26 O -0.50 -5.74 17.36 -18.75 -0.33 -6.06 16 27 O -0.51 -2.70 13.42 -39.27 -0.53 -3.22 16 28 C 0.11 0.92 6.43 -3.71 -0.02 0.90 16 29 C -0.13 -1.14 5.73 -26.61 -0.15 -1.29 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 37 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 38 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.58 7.84 -51.92 -0.41 0.18 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.36 6.02 -51.93 -0.31 0.05 16 43 H 0.12 1.00 7.62 -51.94 -0.40 0.60 16 44 H 0.12 0.32 8.14 -51.92 -0.42 -0.11 16 45 H 0.41 0.83 9.10 45.56 0.41 1.24 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.10 0.92 7.01 -51.93 -0.36 0.55 16 48 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -37.35 405.18 -9.05 -46.40 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -7.20 Total: 4.24 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.69 Total: -0.29 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.12 Total: -52.37 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -1.12 Total: -21.52 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.35 -9.05 -46.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074716.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.778 kcal (2) G-P(sol) polarization free energy of solvation -37.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds