Wall clock time and date at job start Sat Apr 11 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47138 * 2 1 4 4 C 1.50702 * 109.49813 * 300.06562 * 3 2 1 5 5 O 1.20827 * 120.00223 * 239.93747 * 4 3 2 6 6 O 1.34225 * 119.99910 * 59.93336 * 4 3 2 7 7 C 1.53042 * 109.49753 * 180.02562 * 3 2 1 8 8 C 1.53047 * 109.53583 * 301.37897 * 7 3 2 9 9 C 1.53194 * 109.31223 * 298.63619 * 8 7 3 10 10 N 1.46920 * 108.77524 * 54.63396 * 9 8 7 11 11 C 1.34783 * 120.63061 * 126.11638 * 10 9 8 12 12 O 1.21350 * 119.99985 * 174.04598 * 11 10 9 13 13 C 1.49447 * 119.99787 * 354.04544 * 11 10 9 14 14 O 1.21352 * 120.00124 * 353.68918 * 13 11 10 15 15 N 1.34770 * 120.00085 * 173.69511 * 13 11 10 16 16 C 1.46500 * 120.00494 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.47384 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47116 * 179.97438 * 17 16 15 19 19 C 1.50695 * 109.47230 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00284 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00254 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00308 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46995 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47128 * 119.99716 * 23 21 19 26 26 H 1.48495 * 109.47262 * 239.99956 * 23 21 19 27 27 C 1.46931 * 118.74117 * 306.39051 * 10 9 8 28 28 H 1.08999 * 109.47454 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46704 * 299.99920 * 1 2 3 30 30 H 1.09005 * 109.47588 * 59.99786 * 1 2 3 31 31 H 1.09001 * 109.46960 * 240.00410 * 2 1 3 32 32 H 1.09001 * 109.47125 * 120.00084 * 2 1 3 33 33 H 0.96703 * 116.99993 * 180.02562 * 6 4 3 34 34 H 1.08999 * 109.46178 * 181.35833 * 7 3 2 35 35 H 1.08999 * 109.45291 * 61.39116 * 7 3 2 36 36 H 1.09000 * 109.49424 * 178.68558 * 8 7 3 37 37 H 1.08997 * 109.51945 * 58.60316 * 8 7 3 38 38 H 1.08997 * 109.58652 * 294.84652 * 9 8 7 39 39 H 1.09000 * 109.70368 * 174.49466 * 9 8 7 40 40 H 0.97001 * 119.99923 * 359.97438 * 15 13 11 41 41 H 1.09001 * 109.46693 * 299.99761 * 16 15 13 42 42 H 1.09002 * 109.47225 * 59.99385 * 16 15 13 43 43 H 1.09001 * 109.47287 * 299.99736 * 17 16 15 44 44 H 1.08996 * 109.46910 * 60.00053 * 17 16 15 45 45 H 1.09001 * 109.47110 * 300.00192 * 18 17 16 46 46 H 1.09002 * 109.47075 * 59.99980 * 18 17 16 47 47 H 0.97006 * 120.00043 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58538 * 173.39815 * 27 10 9 49 49 H 1.08993 * 109.58630 * 293.82208 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5366 2.1540 -1.2295 5 8 2.3211 2.6146 -2.0246 6 8 0.2168 2.2759 -1.4412 7 6 3.5704 1.4432 -0.0006 8 6 4.0830 0.6922 1.2304 9 6 3.5996 1.4058 2.4969 10 7 2.1377 1.5383 2.4363 11 6 1.3650 1.0887 3.4450 12 8 0.1700 1.2996 3.4344 13 6 1.9800 0.3304 4.5765 14 8 3.1523 0.0200 4.5327 15 7 1.2327 -0.0087 5.6455 16 6 1.8356 -0.7515 6.7550 17 6 0.7791 -1.0064 7.8319 18 6 1.4087 -1.7827 8.9903 19 6 0.3684 -2.0332 10.0514 20 1 -0.6411 -1.6749 9.9132 21 6 0.7051 -2.7198 11.1987 22 7 1.9344 -3.1556 11.3672 23 14 -0.5846 -3.0309 12.5136 24 1 -1.8796 -2.4435 12.0855 25 1 -0.7467 -4.4937 12.7117 26 1 -0.1532 -2.4035 13.7884 27 6 1.5335 2.1646 1.2525 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 -0.0581 2.7400 -2.2438 34 1 3.9331 2.4708 0.0237 35 1 3.9332 0.9514 -0.9032 36 1 5.1727 0.6729 1.2171 37 1 3.7009 -0.3285 1.2197 38 1 4.0540 2.3949 2.5550 39 1 3.8778 0.8238 3.3755 40 1 0.2956 0.2397 5.6806 41 1 2.2187 -1.7040 6.3887 42 1 2.6538 -0.1698 7.1795 43 1 0.3964 -0.0537 8.1981 44 1 -0.0393 -1.5879 7.4076 45 1 1.7912 -2.7354 8.6239 46 1 2.2274 -1.2015 9.4147 47 1 2.1715 -3.6384 12.1745 48 1 0.4481 2.0811 1.3087 49 1 1.8194 3.2155 1.2091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603594123.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:03 Heat of formation + Delta-G solvation = -160.310878 kcal Electronic energy + Delta-G solvation = -30439.622945 eV Core-core repulsion = 26173.875990 eV Total energy + Delta-G solvation = -4265.746955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.74970 -40.69898 -39.00762 -37.98430 -36.64083 -35.91333 -34.52591 -33.38262 -32.61133 -31.31456 -30.22239 -27.60936 -26.39527 -25.49104 -24.09064 -23.49758 -22.61681 -22.09595 -20.93645 -20.08351 -19.06414 -18.45347 -17.91598 -17.19168 -16.96220 -16.40646 -16.32458 -16.03546 -15.77640 -15.14542 -15.04153 -14.68319 -14.60433 -14.44482 -14.28199 -14.14157 -13.86066 -13.73751 -13.17403 -13.01240 -12.60308 -12.36386 -12.26211 -12.19531 -11.96272 -11.89504 -11.85294 -11.51692 -11.30855 -11.14543 -10.97085 -10.94281 -10.87075 -10.81036 -10.66837 -10.58933 -9.95540 -9.62870 -9.24938 -9.16078 -9.05632 -9.02189 -8.41174 -6.05778 -4.08710 1.27347 1.68889 2.13217 2.57452 3.08125 3.28214 3.35795 3.37489 3.40474 3.97268 4.15472 4.23543 4.30875 4.42036 4.62606 4.69998 4.82678 4.98514 5.03830 5.06795 5.14753 5.22689 5.30445 5.35981 5.47018 5.49815 5.51903 5.58551 5.62607 5.68447 5.73848 5.82289 5.96468 5.98995 6.01621 6.04538 6.12717 6.38078 6.48464 6.68266 6.80912 6.90937 7.20706 7.43129 7.58264 7.61504 7.69278 7.92319 7.95627 8.33606 8.97989 9.55898 11.05470 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027124 B = 0.001937 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.032518 B =14454.804509 C =14995.852050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.113 4.113 3 C -0.062 4.062 4 C 0.493 3.507 5 O -0.511 6.511 6 O -0.504 6.504 7 C -0.103 4.103 8 C -0.131 4.131 9 C 0.041 3.959 10 N -0.579 5.579 11 C 0.511 3.489 12 O -0.517 6.517 13 C 0.505 3.495 14 O -0.514 6.514 15 N -0.685 5.685 16 C 0.112 3.888 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.119 3.881 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.406 0.594 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.166 0.834 40 H 0.412 0.588 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.112 0.888 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 10.832 -26.755 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.150 4.150 3 C -0.064 4.064 4 C 0.335 3.665 5 O -0.398 6.398 6 O -0.316 6.316 7 C -0.141 4.141 8 C -0.169 4.169 9 C -0.079 4.079 10 N -0.312 5.312 11 C 0.294 3.706 12 O -0.393 6.393 13 C 0.286 3.714 14 O -0.393 6.393 15 N -0.336 5.336 16 C -0.010 4.010 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.004 4.004 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.265 0.735 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.182 0.818 40 H 0.248 0.752 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.130 0.870 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.537 10.543 -26.484 28.547 hybrid contribution -1.151 0.315 0.024 1.193 sum 0.386 10.858 -26.459 28.603 Atomic orbital electron populations 1.22146 0.94289 1.02289 1.03946 1.21612 0.97442 0.92468 1.03474 1.21005 0.97770 0.97040 0.90630 1.23201 0.80064 0.76250 0.87007 1.90726 1.57041 1.45517 1.46505 1.84692 1.25914 1.72357 1.48646 1.21546 0.90654 1.02341 0.99538 1.21945 1.01589 1.00022 0.93332 1.23437 0.77411 1.03060 1.03979 1.47834 1.08249 1.57787 1.17367 1.20229 0.86639 0.80023 0.83725 1.90760 1.14629 1.56141 1.77727 1.20007 0.86622 0.81121 0.83698 1.90278 1.15667 1.55007 1.78314 1.46122 1.14884 1.54534 1.18023 1.21898 0.97698 0.95794 0.85581 1.21935 0.97040 1.01275 0.95874 1.19034 0.96257 0.94982 0.91054 1.21231 0.96491 1.35657 1.02682 0.92514 1.25031 0.95378 0.95702 0.98387 1.69971 1.17822 1.38109 1.27358 0.86517 0.81779 0.77929 0.81664 1.19723 1.20996 1.20995 1.21693 1.00946 0.95698 0.82082 0.92488 0.91577 0.90461 0.91269 0.89843 0.73486 0.90720 0.90558 0.89726 0.90764 0.91598 0.81821 0.75151 0.90891 0.90882 0.92396 0.92386 0.96182 0.96182 0.92957 0.86970 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.05 37.15 0.34 -1.05 16 2 C -0.11 -0.89 4.49 -26.74 -0.12 -1.01 16 3 C -0.06 -0.50 0.51 -155.54 -0.08 -0.57 16 4 C 0.49 4.04 6.86 36.01 0.25 4.28 16 5 O -0.51 -5.52 16.74 -18.75 -0.31 -5.83 16 6 O -0.50 -2.92 10.27 -39.24 -0.40 -3.33 16 7 C -0.10 -0.78 4.00 -26.69 -0.11 -0.89 16 8 C -0.13 -0.98 5.74 -26.61 -0.15 -1.13 16 9 C 0.04 0.37 6.28 -3.71 -0.02 0.35 16 10 N -0.58 -5.82 2.41 -173.28 -0.42 -6.23 16 11 C 0.51 6.29 7.75 -11.58 -0.09 6.20 16 12 O -0.52 -7.17 15.92 5.50 0.09 -7.08 16 13 C 0.50 6.79 7.78 -11.59 -0.09 6.70 16 14 O -0.51 -7.45 13.08 5.50 0.07 -7.38 16 15 N -0.69 -9.38 5.55 -60.73 -0.34 -9.72 16 16 C 0.11 1.78 5.67 -4.04 -0.02 1.75 16 17 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 18 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 19 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 20 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 23 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.12 1.04 4.82 -3.71 -0.02 1.02 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.64 6.30 -51.92 -0.33 0.31 16 30 H 0.08 0.58 5.32 -51.93 -0.28 0.30 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.74 5.98 -51.93 -0.31 0.43 16 33 H 0.41 0.72 9.10 45.56 0.41 1.14 16 34 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 35 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.59 6.34 -51.93 -0.33 0.27 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.17 1.80 3.75 -56.90 -0.21 1.59 16 40 H 0.41 5.19 7.96 -40.82 -0.32 4.87 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 48 H 0.11 1.08 5.07 -51.93 -0.26 0.82 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -32.24 387.51 -7.23 -39.47 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -6.66 Total: 2.98 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.81 Total: 0.61 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.02 Total: -41.46 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.56 Total: -23.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.24 -7.23 -39.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603594123.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.839 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds