Wall clock time and date at job start Sat Apr 11 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.50700 * 109.49758 * 59.93384 * 3 2 1 5 5 O 1.20832 * 119.99723 * 120.06107 * 4 3 2 6 6 O 1.34228 * 120.00473 * 300.06395 * 4 3 2 7 7 C 1.53041 * 109.49771 * 179.97438 * 3 2 1 8 8 C 1.53045 * 109.53603 * 58.62257 * 7 3 2 9 9 C 1.53190 * 109.31400 * 61.36113 * 8 7 3 10 10 N 1.46923 * 108.77639 * 305.36729 * 9 8 7 11 11 C 1.34781 * 120.62960 * 233.58347 * 10 9 8 12 12 O 1.21354 * 119.99859 * 171.31662 * 11 10 9 13 13 C 1.49446 * 119.99807 * 351.59745 * 11 10 9 14 14 O 1.21345 * 120.00683 * 352.94061 * 13 11 10 15 15 N 1.34785 * 119.99828 * 172.94788 * 13 11 10 16 16 C 1.46505 * 119.99830 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46695 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46923 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47370 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99847 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00289 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99622 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00167 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46902 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47116 * 119.99849 * 23 21 19 26 26 H 1.48504 * 109.47053 * 240.00198 * 23 21 19 27 27 C 1.46928 * 118.73918 * 53.86022 * 10 9 8 28 28 H 1.09004 * 109.47265 * 299.99868 * 1 2 3 29 29 H 1.09001 * 109.47179 * 59.99763 * 1 2 3 30 30 H 1.09003 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46780 * 240.00027 * 2 1 3 32 32 H 1.09001 * 109.47179 * 120.00237 * 2 1 3 33 33 H 0.96697 * 117.00657 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46179 * 298.60025 * 7 3 2 35 35 H 1.09000 * 109.46108 * 178.63712 * 7 3 2 36 36 H 1.09005 * 109.49365 * 301.40794 * 8 7 3 37 37 H 1.08997 * 109.52617 * 181.33304 * 8 7 3 38 38 H 1.09002 * 109.58562 * 185.58100 * 9 8 7 39 39 H 1.09003 * 109.58259 * 65.15562 * 9 8 7 40 40 H 0.97000 * 119.99728 * 359.97438 * 15 13 11 41 41 H 1.09000 * 109.46869 * 299.99514 * 16 15 13 42 42 H 1.08993 * 109.47564 * 59.99317 * 16 15 13 43 43 H 1.09000 * 109.47198 * 299.99475 * 17 16 15 44 44 H 1.09001 * 109.47428 * 59.99764 * 17 16 15 45 45 H 1.09000 * 109.46924 * 299.99851 * 18 17 16 46 46 H 1.09001 * 109.47091 * 59.99766 * 18 17 16 47 47 H 0.97001 * 119.99212 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58315 * 65.92943 * 27 10 9 49 49 H 1.08998 * 109.58387 * 186.35066 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5367 2.1539 1.2294 5 8 2.3213 2.6145 2.0246 6 8 0.2168 2.2760 1.4412 7 6 3.5704 1.4432 0.0006 8 6 4.0831 0.6923 -1.2304 9 6 3.5997 1.4058 -2.4969 10 7 2.1377 1.5383 -2.4363 11 6 1.3655 1.0940 -3.4477 12 8 0.1589 1.0636 -3.3216 13 6 1.9955 0.6331 -4.7220 14 8 3.1877 0.7772 -4.8964 15 7 1.2395 0.0575 -5.6779 16 6 1.8572 -0.3948 -6.9270 17 6 0.7869 -1.0071 -7.8327 18 6 1.4318 -1.4789 -9.1374 19 6 0.3777 -2.0825 -10.0293 20 1 -0.6496 -2.1250 -9.6988 21 6 0.7246 -2.5797 -11.2677 22 7 1.9754 -2.5266 -11.6707 23 14 -0.5821 -3.3273 -12.3736 24 1 -1.9005 -3.2665 -11.6928 25 1 -0.6467 -2.5668 -13.6474 26 1 -0.2379 -4.7433 -12.6592 27 6 1.5339 2.1697 -1.2550 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 -0.0580 2.7400 2.2438 34 1 3.9334 0.9515 0.9032 35 1 3.9331 2.4708 -0.0238 36 1 3.7005 -0.3284 -1.2194 37 1 5.1728 0.6724 -1.2174 38 1 3.8776 0.8216 -3.3741 39 1 4.0541 2.3949 -2.5549 40 1 0.2865 -0.0579 -5.5385 41 1 2.3191 0.4536 -7.4319 42 1 2.6175 -1.1438 -6.7059 43 1 0.3254 -1.8556 -7.3275 44 1 0.0263 -0.2583 -8.0538 45 1 1.8930 -0.6302 -9.6424 46 1 2.1927 -2.2276 -8.9166 47 1 2.2193 -2.8760 -12.5421 48 1 1.8232 3.2198 -1.2139 49 1 0.4484 2.0896 -1.3126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603594124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:08 Heat of formation + Delta-G solvation = -164.301597 kcal Electronic energy + Delta-G solvation = -30403.010250 eV Core-core repulsion = 26137.090245 eV Total energy + Delta-G solvation = -4265.920005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73570 -40.67497 -39.00458 -37.94931 -36.64043 -35.87747 -34.54075 -33.37426 -32.62838 -31.29915 -30.21913 -27.59712 -26.39893 -25.50144 -24.08200 -23.48795 -22.62035 -22.09973 -20.88886 -20.05339 -19.08533 -18.45621 -17.83306 -17.21031 -17.07278 -16.43670 -16.32723 -16.05081 -15.63420 -15.15608 -14.92171 -14.77330 -14.58668 -14.43608 -14.30142 -14.01196 -13.86094 -13.68094 -13.31283 -13.02003 -12.60703 -12.35449 -12.22738 -12.20514 -11.94595 -11.89119 -11.81910 -11.52538 -11.29934 -11.15006 -11.01003 -10.94686 -10.88449 -10.80378 -10.67748 -10.59109 -9.94681 -9.65355 -9.28943 -9.16061 -9.08755 -9.00186 -8.40854 -6.05452 -4.08383 1.30158 1.67536 2.13273 2.57514 3.08287 3.28391 3.35915 3.37581 3.40615 3.95409 4.15114 4.23154 4.33375 4.42428 4.58684 4.66622 4.82171 4.97398 5.03202 5.05338 5.13318 5.21475 5.30762 5.35420 5.44818 5.48553 5.53322 5.56852 5.63741 5.69677 5.72413 5.83497 5.93512 5.99425 6.02758 6.04397 6.16228 6.31997 6.49382 6.66960 6.79465 6.91323 7.22262 7.42928 7.58734 7.61872 7.69825 7.92746 7.96456 8.34005 8.98340 9.56221 11.05816 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.001936 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.383331 B =14455.892353 C =15047.989417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C -0.062 4.062 4 C 0.493 3.507 5 O -0.511 6.511 6 O -0.504 6.504 7 C -0.103 4.103 8 C -0.137 4.137 9 C 0.065 3.935 10 N -0.581 5.581 11 C 0.511 3.489 12 O -0.516 6.516 13 C 0.502 3.498 14 O -0.517 6.517 15 N -0.687 5.687 16 C 0.113 3.887 17 C -0.123 4.123 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.057 0.943 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.119 3.881 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.071 0.929 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.076 0.924 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 9.271 27.769 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.148 4.148 3 C -0.064 4.064 4 C 0.334 3.666 5 O -0.398 6.398 6 O -0.316 6.316 7 C -0.140 4.140 8 C -0.174 4.174 9 C -0.056 4.056 10 N -0.315 5.315 11 C 0.294 3.706 12 O -0.391 6.391 13 C 0.283 3.717 14 O -0.395 6.395 15 N -0.338 5.338 16 C -0.009 4.009 17 C -0.161 4.161 18 C -0.013 4.013 19 C -0.560 4.560 20 H 0.075 0.925 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.004 4.004 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.265 0.735 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.164 0.836 39 H 0.090 0.910 40 H 0.248 0.752 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.441 9.221 27.383 28.929 hybrid contribution -1.158 -0.054 0.088 1.162 sum 0.283 9.167 27.470 28.961 Atomic orbital electron populations 1.22155 0.94191 1.02285 1.04098 1.21586 0.97576 0.92351 1.03276 1.21080 0.97656 0.97078 0.90599 1.23212 0.80071 0.76259 0.87012 1.90728 1.57036 1.45546 1.46521 1.84693 1.25905 1.72347 1.48636 1.21527 0.90724 1.02374 0.99396 1.22051 1.01723 0.99989 0.93686 1.22989 0.77552 1.03200 1.01867 1.47821 1.08261 1.58239 1.17207 1.20292 0.86876 0.78559 0.84841 1.90753 1.13863 1.53198 1.81289 1.19979 0.86997 0.79692 0.85028 1.90487 1.14482 1.55936 1.78626 1.46118 1.12992 1.57547 1.17148 1.21877 0.97432 0.99545 0.82047 1.21932 0.96940 0.99534 0.97696 1.19035 0.96179 0.96548 0.89579 1.21232 0.94659 1.39179 1.00973 0.92516 1.25032 0.95375 0.96052 0.98047 1.69974 1.16611 1.46481 1.20198 0.86518 0.81893 0.78893 0.80586 1.19724 1.20995 1.20996 1.21794 1.01058 0.95461 0.82056 0.90617 0.91125 0.92602 0.89961 0.91392 0.73496 0.90522 0.90631 0.90866 0.89567 0.83572 0.91037 0.75225 0.90964 0.90954 0.92414 0.92402 0.96183 0.96191 0.92964 0.90567 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.06 37.16 0.34 -1.05 16 2 C -0.11 -0.85 4.49 -26.73 -0.12 -0.97 16 3 C -0.06 -0.48 0.51 -155.32 -0.08 -0.56 16 4 C 0.49 3.96 6.86 36.01 0.25 4.21 16 5 O -0.51 -5.46 16.74 -18.76 -0.31 -5.77 16 6 O -0.50 -2.88 10.27 -39.25 -0.40 -3.28 16 7 C -0.10 -0.75 4.00 -26.69 -0.11 -0.85 16 8 C -0.14 -0.95 5.74 -26.61 -0.15 -1.11 16 9 C 0.06 0.57 5.98 -3.71 -0.02 0.55 16 10 N -0.58 -5.75 2.40 -173.01 -0.42 -6.17 16 11 C 0.51 6.25 7.73 -11.59 -0.09 6.16 16 12 O -0.52 -7.02 15.24 5.49 0.08 -6.94 16 13 C 0.50 6.83 7.74 -11.58 -0.09 6.74 16 14 O -0.52 -7.69 13.18 5.50 0.07 -7.62 16 15 N -0.69 -9.50 5.55 -60.73 -0.34 -9.83 16 16 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 17 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 18 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 19 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 22 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.12 1.02 4.88 -3.49 -0.02 1.00 16 28 H 0.08 0.56 5.32 -51.93 -0.28 0.28 16 29 H 0.07 0.69 5.62 -51.93 -0.29 0.40 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.70 5.98 -51.93 -0.31 0.39 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.41 0.69 9.10 45.56 0.41 1.11 16 34 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 36 H 0.07 0.53 6.34 -51.93 -0.33 0.20 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.15 1.58 4.31 -54.78 -0.24 1.35 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.41 5.22 7.96 -40.82 -0.33 4.89 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.11 1.07 5.09 -51.93 -0.26 0.80 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -32.44 386.53 -7.23 -39.67 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.65 Total: 2.63 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.81 Total: 0.84 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: -0.02 Total: -41.56 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.56 Total: -23.61 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.44 -7.23 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603594124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.627 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds