Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47134 * 2 1 4 4 C 1.50700 * 109.49758 * 59.93384 * 3 2 1 5 5 O 1.20832 * 119.99723 * 120.06107 * 4 3 2 6 6 O 1.34228 * 120.00473 * 300.06395 * 4 3 2 7 7 C 1.53041 * 109.49771 * 179.97438 * 3 2 1 8 8 C 1.53045 * 109.53603 * 58.62257 * 7 3 2 9 9 C 1.53190 * 109.31400 * 61.36113 * 8 7 3 10 10 N 1.46923 * 108.77639 * 305.36729 * 9 8 7 11 11 C 1.34781 * 120.62960 * 233.58347 * 10 9 8 12 12 O 1.21354 * 119.99859 * 171.31662 * 11 10 9 13 13 C 1.49446 * 119.99807 * 351.59745 * 11 10 9 14 14 O 1.21345 * 120.00683 * 352.94061 * 13 11 10 15 15 N 1.34785 * 119.99828 * 172.94788 * 13 11 10 16 16 C 1.46505 * 119.99830 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46695 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.46923 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47370 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99847 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00289 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99622 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00167 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46902 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47116 * 119.99849 * 23 21 19 26 26 H 1.48504 * 109.47053 * 240.00198 * 23 21 19 27 27 C 1.46928 * 118.73918 * 53.86022 * 10 9 8 28 28 H 1.09004 * 109.47265 * 299.99868 * 1 2 3 29 29 H 1.09001 * 109.47179 * 59.99763 * 1 2 3 30 30 H 1.09003 * 109.47382 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46780 * 240.00027 * 2 1 3 32 32 H 1.09001 * 109.47179 * 120.00237 * 2 1 3 33 33 H 0.96697 * 117.00657 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46179 * 298.60025 * 7 3 2 35 35 H 1.09000 * 109.46108 * 178.63712 * 7 3 2 36 36 H 1.09005 * 109.49365 * 301.40794 * 8 7 3 37 37 H 1.08997 * 109.52617 * 181.33304 * 8 7 3 38 38 H 1.09002 * 109.58562 * 185.58100 * 9 8 7 39 39 H 1.09003 * 109.58259 * 65.15562 * 9 8 7 40 40 H 0.97000 * 119.99728 * 359.97438 * 15 13 11 41 41 H 1.09000 * 109.46869 * 299.99514 * 16 15 13 42 42 H 1.08993 * 109.47564 * 59.99317 * 16 15 13 43 43 H 1.09000 * 109.47198 * 299.99475 * 17 16 15 44 44 H 1.09001 * 109.47428 * 59.99764 * 17 16 15 45 45 H 1.09000 * 109.46924 * 299.99851 * 18 17 16 46 46 H 1.09001 * 109.47091 * 59.99766 * 18 17 16 47 47 H 0.97001 * 119.99212 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.58315 * 65.92943 * 27 10 9 49 49 H 1.08998 * 109.58387 * 186.35066 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5367 2.1539 1.2294 5 8 2.3213 2.6145 2.0246 6 8 0.2168 2.2760 1.4412 7 6 3.5704 1.4432 0.0006 8 6 4.0831 0.6923 -1.2304 9 6 3.5997 1.4058 -2.4969 10 7 2.1377 1.5383 -2.4363 11 6 1.3655 1.0940 -3.4477 12 8 0.1589 1.0636 -3.3216 13 6 1.9955 0.6331 -4.7220 14 8 3.1877 0.7772 -4.8964 15 7 1.2395 0.0575 -5.6779 16 6 1.8572 -0.3948 -6.9270 17 6 0.7869 -1.0071 -7.8327 18 6 1.4318 -1.4789 -9.1374 19 6 0.3777 -2.0825 -10.0293 20 1 -0.6496 -2.1250 -9.6988 21 6 0.7246 -2.5797 -11.2677 22 7 1.9754 -2.5266 -11.6707 23 14 -0.5821 -3.3273 -12.3736 24 1 -1.9005 -3.2665 -11.6928 25 1 -0.6467 -2.5668 -13.6474 26 1 -0.2379 -4.7433 -12.6592 27 6 1.5339 2.1697 -1.2550 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 -0.0580 2.7400 2.2438 34 1 3.9334 0.9515 0.9032 35 1 3.9331 2.4708 -0.0238 36 1 3.7005 -0.3284 -1.2194 37 1 5.1728 0.6724 -1.2174 38 1 3.8776 0.8216 -3.3741 39 1 4.0541 2.3949 -2.5549 40 1 0.2865 -0.0579 -5.5385 41 1 2.3191 0.4536 -7.4319 42 1 2.6175 -1.1438 -6.7059 43 1 0.3254 -1.8556 -7.3275 44 1 0.0263 -0.2583 -8.0538 45 1 1.8930 -0.6302 -9.6424 46 1 2.1927 -2.2276 -8.9166 47 1 2.2193 -2.8760 -12.5421 48 1 1.8232 3.2198 -1.2139 49 1 0.4484 2.0896 -1.3126 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603594124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = -186.173619 kcal Electronic energy + Delta-G solvation = -30403.958692 eV Core-core repulsion = 26137.090245 eV Total energy + Delta-G solvation = -4266.868447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -42.49836 -41.53364 -39.93629 -38.81021 -37.24800 -37.18103 -35.55438 -35.01025 -33.33161 -33.01873 -30.88800 -29.07984 -27.54769 -26.17619 -25.46714 -24.25613 -23.59443 -23.00465 -22.36364 -21.14533 -19.85733 -19.06211 -18.74240 -18.46261 -18.14726 -17.80965 -17.13634 -16.99849 -16.75907 -16.41985 -16.06831 -15.98366 -15.49992 -15.35652 -15.19359 -14.96621 -14.66193 -14.48752 -14.29882 -14.14175 -13.78449 -13.70058 -13.48928 -13.25935 -12.99968 -12.80506 -12.77640 -12.64288 -12.53166 -12.36393 -12.14230 -11.93819 -11.89735 -11.74005 -11.67218 -11.56585 -11.49597 -11.30471 -11.18515 -10.54377 -10.39226 -10.17130 -9.88718 -8.18781 -6.29155 0.27645 0.98999 1.25953 1.42151 1.43048 1.55661 1.99278 2.06781 2.39652 2.45595 3.15355 3.20627 3.38803 3.52387 3.63480 3.95543 4.05604 4.10522 4.20517 4.21115 4.35571 4.39076 4.42354 4.48818 4.55001 4.55146 4.73498 4.75205 4.83607 4.89362 4.94183 4.99274 5.07443 5.09295 5.15991 5.17680 5.27539 5.33606 5.42698 5.51309 5.53865 5.56210 5.72900 5.86155 5.89058 6.16852 6.25411 6.63739 6.88136 6.89132 6.94957 7.40164 8.93181 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026374 B = 0.001936 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.383331 B =14455.892353 C =15047.989417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.060 4.060 4 C 0.501 3.499 5 O -0.538 6.538 6 O -0.500 6.500 7 C -0.099 4.099 8 C -0.129 4.129 9 C 0.064 3.936 10 N -0.572 5.572 11 C 0.514 3.486 12 O -0.532 6.532 13 C 0.503 3.497 14 O -0.530 6.530 15 N -0.684 5.684 16 C 0.128 3.872 17 C -0.107 4.107 18 C 0.025 3.975 19 C -0.540 4.540 20 H 0.063 0.937 21 C -0.002 4.002 22 N -0.932 5.932 23 Si 0.964 3.036 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.119 3.881 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.425 0.575 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.419 0.581 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H -0.004 1.004 46 H -0.003 1.003 47 H 0.263 0.737 48 H 0.088 0.912 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 9.456 29.204 30.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.145 4.145 3 C -0.062 4.062 4 C 0.344 3.656 5 O -0.428 6.428 6 O -0.314 6.314 7 C -0.136 4.136 8 C -0.167 4.167 9 C -0.057 4.057 10 N -0.305 5.305 11 C 0.297 3.703 12 O -0.409 6.409 13 C 0.284 3.716 14 O -0.409 6.409 15 N -0.336 5.336 16 C 0.005 3.995 17 C -0.144 4.144 18 C -0.013 4.013 19 C -0.578 4.578 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.789 3.211 24 H -0.185 1.185 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.004 4.004 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.287 0.713 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.147 0.853 39 H 0.100 0.900 40 H 0.256 0.744 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.072 0.928 48 H 0.106 0.894 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.478 9.422 28.862 30.365 hybrid contribution -0.846 -0.072 -0.295 0.899 sum -0.367 9.350 28.567 30.060 Atomic orbital electron populations 1.22108 0.94457 1.02146 1.03616 1.21558 0.97264 0.92352 1.03348 1.21045 0.98056 0.96925 0.90140 1.23116 0.80419 0.75556 0.86526 1.90726 1.57835 1.46810 1.47451 1.84641 1.24606 1.72285 1.49829 1.21499 0.90270 1.02419 0.99454 1.22005 1.02670 0.99504 0.92484 1.22995 0.76841 1.03697 1.02170 1.47860 1.08652 1.57114 1.16865 1.19954 0.86680 0.78939 0.84740 1.90752 1.14349 1.54308 1.81508 1.20250 0.86762 0.79168 0.85401 1.90510 1.15093 1.56271 1.79061 1.45918 1.13357 1.57821 1.16479 1.21481 0.96385 0.99014 0.82603 1.21639 0.97246 1.00124 0.95433 1.18935 0.95393 0.94966 0.92002 1.21709 0.95524 1.38956 1.01624 0.91834 1.25972 0.97558 0.96638 0.99834 1.70102 1.18726 1.47647 1.20811 0.85412 0.79390 0.77901 0.78413 1.18473 1.20620 1.20565 1.21888 1.00664 0.96075 0.81725 0.89854 0.92767 0.92623 0.90751 0.90430 0.71282 0.90248 0.90616 0.91003 0.87946 0.85286 0.90031 0.74399 0.91681 0.91370 0.91452 0.91626 0.98535 0.98415 0.92823 0.89371 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 9.06 71.98 0.65 -1.84 16 2 C -0.11 -1.50 4.49 30.59 0.14 -1.37 16 3 C -0.06 -0.82 0.51 -52.71 -0.03 -0.85 16 4 C 0.50 7.16 6.86 71.24 0.49 7.65 16 5 O -0.54 -10.64 16.74 21.94 0.37 -10.27 16 6 O -0.50 -4.69 10.27 -51.39 -0.53 -5.22 16 7 C -0.10 -1.25 4.00 30.62 0.12 -1.13 16 8 C -0.13 -1.58 5.74 30.67 0.18 -1.40 16 9 C 0.06 1.05 5.98 86.36 0.52 1.56 16 10 N -0.57 -10.69 2.40 -819.65 -1.97 -12.66 16 11 C 0.51 12.18 7.73 87.27 0.67 12.86 16 12 O -0.53 -14.10 15.24 -3.26 -0.05 -14.15 16 13 C 0.50 13.42 7.74 87.27 0.68 14.10 16 14 O -0.53 -15.62 13.18 -3.23 -0.04 -15.66 16 15 N -0.68 -18.50 5.55 -464.41 -2.58 -21.07 16 16 C 0.13 4.10 5.67 86.38 0.49 4.59 16 17 C -0.11 -3.94 5.27 30.59 0.16 -3.78 16 18 C 0.02 1.24 4.97 29.85 0.15 1.39 16 19 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 20 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 21 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 22 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 23 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.12 1.86 4.88 86.51 0.42 2.29 16 28 H 0.08 1.09 5.32 -2.38 -0.01 1.08 16 29 H 0.05 1.01 5.62 -2.39 -0.01 1.00 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.17 5.98 -2.39 -0.01 1.16 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.42 0.50 9.10 -74.06 -0.67 -0.17 16 34 H 0.08 1.01 8.07 -2.39 -0.02 0.99 16 35 H 0.08 0.99 8.13 -2.39 -0.02 0.97 16 36 H 0.07 0.93 6.34 -2.38 -0.02 0.91 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.13 2.70 4.31 -47.62 -0.21 2.50 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.42 10.22 7.96 -92.71 -0.74 9.48 16 41 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 47 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 48 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.11 1.88 5.09 -2.39 -0.01 1.87 16 Total: -1.00 -69.33 386.53 2.24 -67.10 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.61 Total: 17.01 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.33 Total: 4.99 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -4.26 Total: -89.25 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.25 Total: -45.30 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.33 2.24 -67.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603594124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.078 kcal (2) G-P(sol) polarization free energy of solvation -69.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds