Wall clock time and date at job start Sat Apr 11 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00181 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99845 * 0.02562 * 13 12 11 15 15 N 1.34782 * 120.00074 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00016 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46810 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.82382 * 305.55823 * 17 16 15 19 19 C 1.54454 * 109.82922 * 184.57663 * 17 16 15 20 20 C 1.55465 * 102.35978 * 219.12212 * 19 17 16 21 21 C 1.54084 * 100.80233 * 33.20112 * 20 19 17 22 22 C 1.52874 * 115.02982 * 94.65541 * 21 20 19 23 23 C 1.53939 * 86.81131 * 141.74789 * 22 21 20 24 24 C 1.50697 * 113.58785 * 220.65334 * 23 22 21 25 25 O 1.20828 * 120.00038 * 97.66844 * 24 23 22 26 26 O 1.34224 * 120.00315 * 277.66945 * 24 23 22 27 27 C 1.52866 * 115.04280 * 194.78589 * 21 20 19 28 28 O 1.42652 * 106.36131 * 324.73411 * 21 20 19 29 29 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 31 31 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 32 32 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 33 33 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 34 34 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 35 35 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 36 36 H 0.97002 * 119.99778 * 359.97438 * 12 11 10 37 37 H 0.97002 * 119.99885 * 0.02562 * 15 13 12 38 38 H 1.08998 * 109.46965 * 300.00212 * 16 15 13 39 39 H 1.08994 * 109.46979 * 60.00162 * 16 15 13 40 40 H 1.08997 * 110.83198 * 337.34085 * 19 17 16 41 41 H 1.09009 * 110.83066 * 100.90541 * 19 17 16 42 42 H 1.08994 * 111.15172 * 275.31423 * 20 19 17 43 43 H 1.09002 * 111.15111 * 151.09056 * 20 19 17 44 44 H 1.09001 * 113.66001 * 256.23044 * 22 21 20 45 45 H 1.09005 * 113.65478 * 27.27139 * 22 21 20 46 46 H 1.08994 * 113.66037 * 89.84678 * 23 22 21 47 47 H 0.96700 * 117.00274 * 180.02562 * 26 24 23 48 48 H 1.09009 * 113.65515 * 332.74320 * 27 21 20 49 49 H 1.09002 * 113.65847 * 103.68645 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 7 2.4325 -6.1005 0.0030 13 6 1.9833 -7.3712 0.0034 14 8 0.7879 -7.5934 0.0017 15 7 2.8592 -8.3956 0.0045 16 6 2.3709 -9.7769 0.0043 17 6 3.5610 -10.7384 0.0065 18 1 4.2245 -10.5072 -0.8268 19 6 3.0585 -12.1943 -0.1096 20 6 4.0131 -12.9537 0.8541 21 6 4.2557 -11.8763 1.9286 22 6 3.3364 -11.9596 3.1472 23 6 4.5618 -11.5650 3.9912 24 6 4.6684 -12.3215 5.2902 25 8 5.3895 -13.2878 5.3692 26 8 3.9621 -11.9221 6.3594 27 6 5.4330 -12.1495 2.8646 28 8 4.2767 -10.6245 1.2449 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5566 0.8903 31 1 0.6248 -2.5571 -0.8896 32 1 2.8727 -3.6046 -0.8877 33 1 2.8714 -3.6038 0.8922 34 1 0.8528 -5.0447 0.8906 35 1 0.8548 -5.0449 -0.8894 36 1 3.3862 -5.9232 0.0040 37 1 3.8129 -8.2183 0.0055 38 1 1.7644 -9.9479 0.8937 39 1 1.7664 -9.9484 -0.8862 40 1 2.0245 -12.2754 0.2255 41 1 3.1660 -12.5612 -1.1305 42 1 4.9422 -13.2262 0.3536 43 1 3.5260 -13.8311 1.2797 44 1 2.5442 -11.2109 3.1495 45 1 2.9706 -12.9660 3.3512 46 1 4.6773 -10.4886 4.1181 47 1 4.0635 -12.4387 7.1705 48 1 5.6560 -13.2092 2.9892 49 1 6.3178 -11.5538 2.6400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:18 Heat of formation + Delta-G solvation = -165.961422 kcal Electronic energy + Delta-G solvation = -28950.035495 eV Core-core repulsion = 24684.043514 eV Total energy + Delta-G solvation = -4265.991980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.65575 -40.33863 -39.68734 -37.32663 -36.42426 -35.59937 -34.42341 -33.53830 -32.78828 -31.16879 -29.63077 -26.92560 -26.46693 -25.89889 -23.96079 -22.78799 -22.09662 -21.32054 -20.88744 -20.53672 -19.74203 -18.61047 -18.15399 -17.41456 -17.05824 -16.83155 -16.52451 -16.20609 -15.98600 -15.52237 -14.99568 -14.54821 -14.38854 -14.20276 -14.00013 -13.83970 -13.71577 -13.55877 -13.15564 -12.96712 -12.88770 -12.74374 -12.38487 -12.31051 -12.05076 -11.80053 -11.78054 -11.70097 -11.58705 -11.09395 -11.04151 -10.84380 -10.77845 -10.73551 -10.23594 -10.09928 -9.99288 -9.98013 -9.76629 -9.22244 -8.62477 -8.55809 -8.31961 -6.35145 -4.04713 1.69359 2.56502 2.73211 3.04935 3.36614 3.44338 3.46441 3.65312 3.74958 3.78536 4.00450 4.09725 4.16951 4.36391 4.40713 4.55451 4.57173 4.66364 4.85326 4.89266 4.95964 5.06430 5.19411 5.23638 5.25309 5.32698 5.37765 5.41995 5.43773 5.53927 5.59813 5.65060 5.72217 5.74357 6.02483 6.09554 6.37962 6.45575 6.52616 6.58180 6.74781 6.90475 7.04769 7.38645 7.42388 7.51240 8.13883 8.20570 8.46514 8.73920 8.88980 9.67767 11.05582 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.001712 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.372982 B =16355.767866 C =17548.709882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.113 4.113 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.596 6.596 15 N -0.746 5.746 16 C 0.132 3.868 17 C 0.068 3.932 18 H 0.091 0.909 19 C -0.147 4.147 20 C -0.137 4.137 21 C 0.088 3.912 22 C -0.133 4.133 23 C -0.106 4.106 24 C 0.489 3.511 25 O -0.517 6.517 26 O -0.513 6.513 27 C -0.109 4.109 28 O -0.343 6.343 29 H 0.269 0.731 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.394 0.606 37 H 0.398 0.602 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.130 0.870 47 H 0.410 0.590 48 H 0.109 0.891 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -32.167 4.677 34.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.067 0.933 9 C -0.027 4.027 10 C -0.151 4.151 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.475 6.475 15 N -0.403 5.403 16 C 0.007 3.993 17 C 0.011 3.989 18 H 0.109 0.891 19 C -0.185 4.185 20 C -0.175 4.175 21 C 0.048 3.952 22 C -0.171 4.171 23 C -0.125 4.125 24 C 0.332 3.668 25 O -0.406 6.406 26 O -0.325 6.325 27 C -0.147 4.147 28 O -0.262 6.262 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.228 0.772 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.148 0.852 47 H 0.268 0.732 48 H 0.128 0.872 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.494 -30.549 4.405 32.600 hybrid contribution 1.080 -1.950 0.595 2.308 sum 11.574 -32.500 4.999 34.860 Atomic orbital electron populations 1.70777 1.06877 1.30693 1.46449 1.25870 0.96585 1.02780 0.93820 0.83532 0.74866 0.75341 0.76452 1.20766 1.21464 1.21482 1.22015 0.94233 0.91943 1.55953 0.93312 1.19157 0.94524 0.92638 0.96395 1.21749 0.99491 0.92827 1.01079 1.21488 0.91341 0.84259 1.01738 1.45337 1.10418 1.04435 1.79395 1.16001 0.85258 0.80784 0.77939 1.90913 1.14202 1.84197 1.58152 1.44976 1.09094 1.04940 1.81268 1.21548 0.95204 0.79697 1.02812 1.23145 0.93274 0.95105 0.87411 0.89082 1.23110 1.00710 0.93241 1.01412 1.23063 1.00472 0.98011 0.95956 1.22487 0.96411 0.84580 0.91746 1.23349 0.96466 1.03299 0.93947 1.22524 1.00550 1.01795 0.87637 1.23389 0.75545 0.82466 0.85397 1.90713 1.37887 1.27524 1.84449 1.84581 1.65493 1.59407 1.22982 1.23078 0.97238 1.03128 0.91214 1.88345 1.74182 1.30816 1.32866 0.92014 0.97147 0.97149 0.92602 0.92574 0.92070 0.92062 0.77246 0.76867 0.91254 0.90608 0.89687 0.89322 0.89650 0.89406 0.89017 0.88552 0.85203 0.73166 0.87227 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.26 13.65 55.43 0.76 -27.50 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.36 29.90 -169.99 -5.08 20.27 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.60 -17.21 9.11 -34.44 -0.31 -17.53 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 10 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 11 C 0.14 2.45 5.67 -4.05 -0.02 2.43 16 12 N -0.74 -11.02 5.56 -65.23 -0.36 -11.38 16 13 C 0.70 10.85 8.57 -86.91 -0.74 10.11 16 14 O -0.60 -11.79 16.34 5.29 0.09 -11.70 16 15 N -0.75 -8.16 5.53 -65.23 -0.36 -8.52 16 16 C 0.13 1.21 5.21 -4.04 -0.02 1.19 16 17 C 0.07 0.43 3.57 -25.97 -0.09 0.34 16 18 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 19 C -0.15 -0.65 6.55 -24.66 -0.16 -0.81 16 20 C -0.14 -0.58 6.43 -24.86 -0.16 -0.74 16 21 C 0.09 0.52 1.30 -90.20 -0.12 0.40 16 22 C -0.13 -0.80 7.15 -26.31 -0.19 -0.99 16 23 C -0.11 -0.71 4.26 -90.80 -0.39 -1.09 16 24 C 0.49 3.80 7.85 36.00 0.28 4.08 16 25 O -0.52 -5.32 16.65 -18.75 -0.31 -5.63 16 26 O -0.51 -3.23 13.42 -39.24 -0.53 -3.75 16 27 C -0.11 -0.66 6.94 -26.31 -0.18 -0.84 16 28 O -0.34 -2.61 10.79 -35.23 -0.38 -2.99 16 29 H 0.27 8.33 7.22 -40.82 -0.29 8.03 16 30 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 31 H 0.01 0.27 8.01 -51.93 -0.42 -0.14 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.39 4.72 8.49 -40.82 -0.35 4.37 16 37 H 0.40 3.43 8.49 -40.82 -0.35 3.09 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.38 7.85 -51.93 -0.41 -0.03 16 41 H 0.09 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.29 7.93 -51.93 -0.41 -0.12 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.48 7.93 -51.93 -0.41 0.07 16 46 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.41 0.88 9.10 45.56 0.41 1.29 16 48 H 0.11 0.66 7.42 -51.92 -0.39 0.27 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -37.49 406.71 -9.82 -47.31 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.30 Total: 3.19 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.47 Total: -5.42 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.03 Total: -47.40 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.13 Total: -24.08 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.49 -9.82 -47.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.652 kcal (2) G-P(sol) polarization free energy of solvation -37.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds