Wall clock time and date at job start Sat Apr 11 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48495 * 109.47349 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47115 * 120.00275 * 3 2 1 6 6 H 1.48502 * 109.47244 * 239.99796 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47431 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47360 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47163 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00303 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99999 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00254 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.63146 * 316.69616 * 16 15 13 18 18 C 1.53061 * 109.63372 * 196.09009 * 16 15 13 19 19 C 1.51812 * 110.73282 * 325.25050 * 18 16 15 20 20 C 1.51778 * 113.79194 * 293.15074 * 19 18 16 21 21 C 1.52992 * 110.88257 * 67.01483 * 20 19 18 22 22 N 1.47188 * 108.66185 * 273.53922 * 21 20 19 23 23 C 1.46504 * 119.78270 * 251.96373 * 22 21 20 24 24 C 1.50697 * 109.47284 * 270.02336 * 23 22 21 25 25 O 1.20825 * 120.00139 * 0.02562 * 24 23 22 26 26 O 1.34234 * 120.00280 * 179.97438 * 24 23 22 27 27 C 1.33368 * 120.43741 * 71.98828 * 22 21 20 28 28 O 1.21284 * 119.89736 * 179.67538 * 27 22 21 29 29 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00365 * 9 7 2 31 31 H 1.08997 * 109.46954 * 59.99947 * 9 7 2 32 32 H 1.08998 * 109.47149 * 300.00165 * 10 9 7 33 33 H 1.09006 * 109.47096 * 60.00217 * 10 9 7 34 34 H 1.08998 * 109.47331 * 300.00267 * 11 10 9 35 35 H 1.09006 * 109.46696 * 60.00186 * 11 10 9 36 36 H 1.09006 * 109.46959 * 300.00114 * 12 11 10 37 37 H 1.08995 * 109.46675 * 60.00083 * 12 11 10 38 38 H 0.97000 * 120.00110 * 359.97438 * 15 13 12 39 39 H 1.09005 * 109.21605 * 85.54781 * 18 16 15 40 40 H 1.08998 * 109.22230 * 204.89200 * 18 16 15 41 41 H 1.08997 * 108.61381 * 172.04537 * 19 18 16 42 42 H 1.09002 * 108.64010 * 54.27052 * 19 18 16 43 43 H 1.09001 * 109.19806 * 306.64764 * 20 19 18 44 44 H 1.09007 * 109.19543 * 187.37206 * 20 19 18 45 45 H 1.08999 * 109.60645 * 153.78463 * 21 20 19 46 46 H 1.09001 * 109.59914 * 33.28829 * 21 20 19 47 47 H 1.08998 * 109.46985 * 30.02353 * 23 22 21 48 48 H 1.09006 * 109.47174 * 150.02260 * 23 22 21 49 49 H 0.96695 * 116.99984 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 6 1.7209 -7.4551 -0.0005 14 8 0.5081 -7.4551 -0.0005 15 7 2.3947 -8.6223 -0.0016 16 6 1.6622 -9.8911 -0.0010 17 1 0.8329 -9.8348 0.7041 18 6 2.6051 -11.0291 0.3972 19 6 4.0052 -10.7774 -0.1330 20 6 4.1051 -10.8290 -1.6466 21 6 3.3399 -9.6673 -2.2836 22 7 1.9328 -10.0656 -2.4506 23 6 1.4101 -10.3465 -3.7901 24 6 0.8620 -9.0781 -4.3917 25 8 0.9041 -8.0454 -3.7659 26 8 0.3280 -9.0954 -5.6231 27 6 1.1303 -10.1720 -1.3907 28 8 -0.0291 -10.4952 -1.5403 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 0.8896 31 1 0.6241 -2.5567 -0.8903 32 1 2.8719 -3.6043 -0.8905 33 1 2.8719 -3.6044 0.8895 34 1 0.8538 -5.0446 0.8903 35 1 0.8532 -5.0450 -0.8897 36 1 3.1004 -6.0924 -0.8910 37 1 3.1016 -6.0922 0.8890 38 1 3.3647 -8.6224 -0.0027 39 1 2.6409 -11.1016 1.4842 40 1 2.2289 -11.9667 -0.0121 41 1 4.6758 -11.5277 0.2857 42 1 4.3339 -9.7944 0.2041 43 1 3.6872 -11.7710 -2.0016 44 1 5.1537 -10.7703 -1.9388 45 1 3.7721 -9.4345 -3.2567 46 1 3.3979 -8.7925 -1.6360 47 1 2.2126 -10.7302 -4.4201 48 1 0.6152 -11.0892 -3.7217 49 1 -0.0102 -8.2572 -5.9667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605582166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:30 Heat of formation + Delta-G solvation = -161.806942 kcal Electronic energy + Delta-G solvation = -30907.469634 eV Core-core repulsion = 26641.657805 eV Total energy + Delta-G solvation = -4265.811829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.61000 -40.24287 -39.10494 -37.42356 -36.41241 -35.51529 -34.81580 -33.49482 -32.58946 -31.08544 -29.82927 -29.24953 -26.45236 -25.40016 -24.49018 -22.60340 -22.41891 -20.98308 -20.21702 -19.94842 -19.60108 -18.37672 -17.50820 -17.25578 -17.17200 -16.70804 -16.17143 -15.96987 -15.72522 -15.51633 -15.04486 -14.71841 -14.44645 -14.35227 -14.10416 -13.93603 -13.64384 -13.36519 -13.14800 -13.05397 -12.63342 -12.50043 -12.35182 -12.14256 -11.67588 -11.64969 -11.58602 -11.39833 -11.34130 -11.28482 -10.93792 -10.91022 -10.50886 -10.47390 -10.44275 -10.35909 -9.79075 -9.55964 -9.37499 -9.18168 -8.99909 -8.94775 -8.26620 -5.91290 -3.93957 1.98376 2.05135 2.39652 2.73121 2.97622 3.13237 3.37313 3.41577 3.43792 3.96065 4.12723 4.19702 4.30474 4.49387 4.51689 4.59315 4.73919 4.83387 4.89586 4.93682 5.01919 5.03651 5.22318 5.28112 5.35146 5.37343 5.41128 5.43852 5.46008 5.52951 5.69830 5.87222 5.90861 6.14406 6.19430 6.30537 6.35847 6.60145 6.90055 6.90344 7.08509 7.23815 7.31390 7.65994 7.78270 7.83615 7.95437 8.10618 8.24790 8.51883 9.13691 9.69283 11.20055 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.002494 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.003671 B =11222.950403 C =12203.881862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.103 4.103 12 C -0.135 4.135 13 C 0.509 3.491 14 O -0.515 6.515 15 N -0.734 5.734 16 C 0.138 3.862 17 H 0.120 0.880 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.141 4.141 21 C 0.094 3.906 22 N -0.590 5.590 23 C 0.122 3.878 24 C 0.452 3.548 25 O -0.490 6.490 26 O -0.521 6.521 27 C 0.519 3.481 28 O -0.530 6.530 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.403 0.597 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 -30.155 -6.009 33.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.146 4.146 11 C -0.141 4.141 12 C -0.175 4.175 13 C 0.297 3.703 14 O -0.388 6.388 15 N -0.396 5.396 16 C 0.029 3.971 17 H 0.137 0.863 18 C -0.161 4.161 19 C -0.165 4.165 20 C -0.179 4.179 21 C -0.029 4.029 22 N -0.324 5.324 23 C -0.003 4.003 24 C 0.291 3.709 25 O -0.375 6.375 26 O -0.333 6.333 27 C 0.306 3.694 28 O -0.404 6.404 29 H 0.070 0.930 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.245 0.755 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 10.816 -30.258 -5.729 32.640 hybrid contribution 0.678 1.602 -0.370 1.778 sum 11.494 -28.656 -6.100 31.472 Atomic orbital electron populations 1.69970 1.06053 1.26586 1.50849 1.25045 0.94833 0.99197 0.95500 0.86673 0.79569 0.83300 0.78512 1.21330 1.20295 1.20304 1.21249 0.92918 0.91228 1.50493 0.92821 1.19086 0.94065 0.91230 0.97320 1.21636 0.99046 0.94005 0.99955 1.21450 0.97025 0.92608 1.03053 1.21779 1.00105 0.91824 1.03809 1.21245 0.88712 0.85525 0.74831 1.90768 1.14124 1.87306 1.46554 1.46730 1.10320 1.04841 1.77742 1.21293 0.97025 0.85114 0.93645 0.86272 1.21587 0.94465 0.97352 1.02678 1.21172 0.96771 1.02819 0.95741 1.21849 1.01215 0.99385 0.95461 1.22320 0.79255 0.98345 1.02986 1.47469 1.11700 1.68488 1.04723 1.20857 1.02095 0.92930 0.84375 1.24099 0.75431 0.92056 0.79335 1.90838 1.52267 1.33624 1.60795 1.84463 1.72515 1.43432 1.32923 1.20992 0.85444 0.75841 0.87145 1.90735 1.16858 1.46782 1.86072 0.92999 0.96606 0.96609 0.93538 0.93505 0.91807 0.91731 0.89214 0.89066 0.75527 0.89490 0.90012 0.90486 0.91503 0.90757 0.89848 0.89611 0.88738 0.86098 0.85651 0.72755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.29 55.43 0.74 -27.39 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.33 9.11 -34.44 -0.31 -15.65 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 11 C -0.10 -1.98 4.50 -26.73 -0.12 -2.10 16 12 C -0.14 -1.88 5.70 -27.88 -0.16 -2.03 16 13 C 0.51 7.49 7.68 -10.99 -0.08 7.41 16 14 O -0.51 -10.32 15.67 5.56 0.09 -10.23 16 15 N -0.73 -7.19 3.08 -54.55 -0.17 -7.36 16 16 C 0.14 1.39 2.69 -68.69 -0.18 1.20 16 17 H 0.12 1.47 7.84 -51.93 -0.41 1.06 16 18 C -0.12 -0.66 5.57 -27.30 -0.15 -0.82 16 19 C -0.13 -0.41 5.19 -27.95 -0.15 -0.56 16 20 C -0.14 -0.45 5.73 -27.36 -0.16 -0.61 16 21 C 0.09 0.56 5.84 -3.67 -0.02 0.54 16 22 N -0.59 -5.48 1.94 -174.60 -0.34 -5.82 16 23 C 0.12 1.00 5.91 -5.19 -0.03 0.97 16 24 C 0.45 5.14 8.39 36.00 0.30 5.45 16 25 O -0.49 -7.96 17.19 -18.75 -0.32 -8.28 16 26 O -0.52 -4.55 13.42 -39.27 -0.53 -5.08 16 27 C 0.52 6.50 6.22 -11.25 -0.07 6.43 16 28 O -0.53 -8.88 16.60 5.55 0.09 -8.79 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.06 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.40 2.53 4.38 -40.82 -0.18 2.35 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.44 7.86 -51.93 -0.41 0.03 16 41 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.07 0.18 5.71 -51.93 -0.30 -0.11 16 43 H 0.07 0.26 8.05 -51.93 -0.42 -0.16 16 44 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.09 0.40 7.92 -51.93 -0.41 -0.01 16 46 H 0.09 0.66 4.51 -51.93 -0.23 0.42 16 47 H 0.12 0.47 8.03 -51.93 -0.42 0.06 16 48 H 0.13 1.05 7.38 -51.93 -0.38 0.66 16 49 H 0.41 2.38 9.10 45.56 0.41 2.79 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -42.33 396.50 -7.92 -50.25 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -6.93 Total: -0.22 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.51 Total: -0.28 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.23 Total: -40.57 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.67 Total: -32.38 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -42.33 -7.92 -50.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.552 kcal (2) G-P(sol) polarization free energy of solvation -42.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds