Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48495 * 109.47349 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47115 * 120.00275 * 3 2 1 6 6 H 1.48502 * 109.47244 * 239.99796 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47431 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47360 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47163 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00303 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99999 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00254 * 179.97438 * 15 13 12 17 17 H 1.08996 * 109.63146 * 316.69616 * 16 15 13 18 18 C 1.53061 * 109.63372 * 196.09009 * 16 15 13 19 19 C 1.51812 * 110.73282 * 325.25050 * 18 16 15 20 20 C 1.51778 * 113.79194 * 293.15074 * 19 18 16 21 21 C 1.52992 * 110.88257 * 67.01483 * 20 19 18 22 22 N 1.47188 * 108.66185 * 273.53922 * 21 20 19 23 23 C 1.46504 * 119.78270 * 251.96373 * 22 21 20 24 24 C 1.50697 * 109.47284 * 270.02336 * 23 22 21 25 25 O 1.20825 * 120.00139 * 0.02562 * 24 23 22 26 26 O 1.34234 * 120.00280 * 179.97438 * 24 23 22 27 27 C 1.33368 * 120.43741 * 71.98828 * 22 21 20 28 28 O 1.21284 * 119.89736 * 179.67538 * 27 22 21 29 29 H 0.97002 * 119.99824 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00365 * 9 7 2 31 31 H 1.08997 * 109.46954 * 59.99947 * 9 7 2 32 32 H 1.08998 * 109.47149 * 300.00165 * 10 9 7 33 33 H 1.09006 * 109.47096 * 60.00217 * 10 9 7 34 34 H 1.08998 * 109.47331 * 300.00267 * 11 10 9 35 35 H 1.09006 * 109.46696 * 60.00186 * 11 10 9 36 36 H 1.09006 * 109.46959 * 300.00114 * 12 11 10 37 37 H 1.08995 * 109.46675 * 60.00083 * 12 11 10 38 38 H 0.97000 * 120.00110 * 359.97438 * 15 13 12 39 39 H 1.09005 * 109.21605 * 85.54781 * 18 16 15 40 40 H 1.08998 * 109.22230 * 204.89200 * 18 16 15 41 41 H 1.08997 * 108.61381 * 172.04537 * 19 18 16 42 42 H 1.09002 * 108.64010 * 54.27052 * 19 18 16 43 43 H 1.09001 * 109.19806 * 306.64764 * 20 19 18 44 44 H 1.09007 * 109.19543 * 187.37206 * 20 19 18 45 45 H 1.08999 * 109.60645 * 153.78463 * 21 20 19 46 46 H 1.09001 * 109.59914 * 33.28829 * 21 20 19 47 47 H 1.08998 * 109.46985 * 30.02353 * 23 22 21 48 48 H 1.09006 * 109.47174 * 150.02260 * 23 22 21 49 49 H 0.96695 * 116.99984 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4744 -6.1501 -0.0005 13 6 1.7209 -7.4551 -0.0005 14 8 0.5081 -7.4551 -0.0005 15 7 2.3947 -8.6223 -0.0016 16 6 1.6622 -9.8911 -0.0010 17 1 0.8329 -9.8348 0.7041 18 6 2.6051 -11.0291 0.3972 19 6 4.0052 -10.7774 -0.1330 20 6 4.1051 -10.8290 -1.6466 21 6 3.3399 -9.6673 -2.2836 22 7 1.9328 -10.0656 -2.4506 23 6 1.4101 -10.3465 -3.7901 24 6 0.8620 -9.0781 -4.3917 25 8 0.9041 -8.0454 -3.7659 26 8 0.3280 -9.0954 -5.6231 27 6 1.1303 -10.1720 -1.3907 28 8 -0.0291 -10.4952 -1.5403 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5571 0.8896 31 1 0.6241 -2.5567 -0.8903 32 1 2.8719 -3.6043 -0.8905 33 1 2.8719 -3.6044 0.8895 34 1 0.8538 -5.0446 0.8903 35 1 0.8532 -5.0450 -0.8897 36 1 3.1004 -6.0924 -0.8910 37 1 3.1016 -6.0922 0.8890 38 1 3.3647 -8.6224 -0.0027 39 1 2.6409 -11.1016 1.4842 40 1 2.2289 -11.9667 -0.0121 41 1 4.6758 -11.5277 0.2857 42 1 4.3339 -9.7944 0.2041 43 1 3.6872 -11.7710 -2.0016 44 1 5.1537 -10.7703 -1.9388 45 1 3.7721 -9.4345 -3.2567 46 1 3.3979 -8.7925 -1.6360 47 1 2.2126 -10.7302 -4.4201 48 1 0.6152 -11.0892 -3.7217 49 1 -0.0102 -8.2572 -5.9667 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605582166.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = -193.445392 kcal Electronic energy + Delta-G solvation = -30908.841580 eV Core-core repulsion = 26641.657805 eV Total energy + Delta-G solvation = -4267.183775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.43243 -41.18705 -40.21648 -38.23968 -37.27957 -36.70947 -36.26108 -34.64704 -34.22194 -32.07612 -31.06231 -30.25302 -27.69296 -26.66716 -25.11410 -24.31340 -23.16005 -22.15582 -21.60433 -20.88888 -20.43233 -19.24110 -18.48312 -18.34131 -18.16843 -18.00891 -17.53234 -16.93350 -16.88113 -16.52908 -16.42067 -15.86510 -15.62126 -15.13528 -15.02411 -14.95439 -14.57235 -14.46529 -14.18932 -13.85512 -13.73813 -13.71711 -13.57574 -13.32369 -13.11605 -12.88052 -12.79335 -12.60374 -12.38251 -12.20551 -12.16531 -12.01694 -11.84727 -11.71672 -11.64481 -11.41231 -11.38505 -11.26421 -11.20257 -10.83456 -10.56118 -10.23449 -9.85058 -8.19521 -6.32708 1.09522 1.17408 1.39182 1.44105 1.51959 1.56371 1.70318 2.13165 2.31169 2.41400 3.12864 3.30328 3.65107 3.74691 3.83109 3.86780 3.99696 4.03881 4.10255 4.12645 4.17815 4.26887 4.33595 4.54358 4.61633 4.65505 4.66348 4.67811 4.78654 4.84108 4.94372 4.99589 5.14274 5.14651 5.21379 5.27328 5.30918 5.34409 5.37732 5.45574 5.54148 5.54458 5.74874 5.85579 6.13463 6.22908 6.41007 6.84314 6.85721 6.96557 7.19124 7.37168 8.92901 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.002494 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.003671 B =11222.950403 C =12203.881862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.019 3.981 10 C -0.092 4.092 11 C -0.096 4.096 12 C -0.124 4.124 13 C 0.507 3.493 14 O -0.581 6.581 15 N -0.704 5.704 16 C 0.135 3.865 17 H 0.087 0.913 18 C -0.113 4.113 19 C -0.127 4.127 20 C -0.132 4.132 21 C 0.082 3.918 22 N -0.585 5.585 23 C 0.118 3.882 24 C 0.453 3.547 25 O -0.548 6.548 26 O -0.512 6.512 27 C 0.509 3.491 28 O -0.589 6.589 29 H 0.263 0.737 30 H -0.017 1.017 31 H -0.022 1.022 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.117 0.883 37 H 0.131 0.869 38 H 0.424 0.576 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.174 0.826 48 H 0.122 0.878 49 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.349 -31.302 -6.324 36.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.088 0.912 9 C -0.018 4.018 10 C -0.130 4.130 11 C -0.134 4.134 12 C -0.164 4.164 13 C 0.295 3.705 14 O -0.459 6.459 15 N -0.367 5.367 16 C 0.026 3.974 17 H 0.105 0.895 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.170 4.170 21 C -0.039 4.039 22 N -0.316 5.316 23 C -0.006 4.006 24 C 0.295 3.705 25 O -0.438 6.438 26 O -0.325 6.325 27 C 0.296 3.704 28 O -0.468 6.468 29 H 0.071 0.929 30 H 0.002 0.998 31 H -0.004 1.004 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.135 0.865 37 H 0.149 0.851 38 H 0.270 0.730 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.131 0.869 45 H 0.124 0.876 46 H 0.101 0.899 47 H 0.191 0.809 48 H 0.140 0.860 49 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 15.947 -31.452 -6.081 35.784 hybrid contribution -0.953 1.920 -0.364 2.174 sum 14.994 -29.532 -6.445 33.742 Atomic orbital electron populations 1.70148 1.08255 1.27861 1.51817 1.26158 0.95786 1.03967 0.94689 0.85386 0.78118 0.77363 0.79475 1.21145 1.18620 1.18792 1.21728 0.93839 0.92044 1.50408 0.91230 1.19049 0.94702 0.94090 0.94000 1.21428 0.97727 0.92299 1.01541 1.21231 0.97567 0.94217 1.00401 1.21677 0.98808 0.88904 1.06997 1.21436 0.87909 0.87095 0.74012 1.90759 1.16984 1.88237 1.49911 1.46425 1.11207 1.03534 1.75545 1.21309 0.97486 0.86569 0.91991 0.89492 1.21622 0.94784 0.94987 1.03721 1.21229 0.95164 1.04159 0.95932 1.21824 1.02245 0.97890 0.95035 1.22663 0.77529 0.99313 1.04385 1.47633 1.12770 1.66851 1.04377 1.21224 1.03753 0.91164 0.84457 1.24801 0.74190 0.92278 0.79270 1.90824 1.54871 1.35904 1.62223 1.84447 1.71840 1.44305 1.31869 1.21432 0.85002 0.75229 0.88707 1.90695 1.19304 1.49765 1.87017 0.92856 0.99836 1.00379 0.92103 0.91343 0.93910 0.95257 0.86469 0.85118 0.72951 0.88063 0.89865 0.87957 0.90594 0.90528 0.86918 0.87632 0.89866 0.80905 0.86004 0.71392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.93 13.29 21.45 0.28 -60.65 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 3 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 7 C -0.54 -32.23 9.11 25.60 0.23 -32.00 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.02 1.08 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.95 5.15 30.59 0.16 -3.80 16 11 C -0.10 -3.80 4.50 30.60 0.14 -3.66 16 12 C -0.12 -3.27 5.70 29.85 0.17 -3.10 16 13 C 0.51 15.10 7.68 87.66 0.67 15.77 16 14 O -0.58 -25.04 15.67 -3.03 -0.05 -25.09 16 15 N -0.70 -13.05 3.08 -444.89 -1.37 -14.42 16 16 C 0.14 2.74 2.69 44.50 0.12 2.86 16 17 H 0.09 2.35 7.84 -2.39 -0.02 2.33 16 18 C -0.11 -0.98 5.57 30.22 0.17 -0.81 16 19 C -0.13 -0.28 5.19 29.80 0.15 -0.12 16 20 C -0.13 -0.25 5.73 30.19 0.17 -0.08 16 21 C 0.08 0.73 5.84 86.25 0.50 1.24 16 22 N -0.58 -10.30 1.94 -825.47 -1.60 -11.90 16 23 C 0.12 1.80 5.91 85.63 0.51 2.31 16 24 C 0.45 10.38 8.39 71.24 0.60 10.98 16 25 O -0.55 -18.62 17.19 21.97 0.38 -18.24 16 26 O -0.51 -8.77 13.42 -51.46 -0.69 -9.47 16 27 C 0.51 13.15 6.22 88.11 0.55 13.70 16 28 O -0.59 -21.27 16.60 -3.04 -0.05 -21.32 16 29 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 30 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 31 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 35 H 0.03 1.33 8.10 -2.38 -0.02 1.31 16 36 H 0.12 2.49 8.14 -2.38 -0.02 2.48 16 37 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.42 3.99 4.38 -92.71 -0.41 3.59 16 39 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.08 0.74 7.86 -2.39 -0.02 0.72 16 41 H 0.10 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.08 0.04 5.71 -2.39 -0.01 0.03 16 43 H 0.08 0.19 8.05 -2.39 -0.02 0.17 16 44 H 0.11 -0.32 8.14 -2.38 -0.02 -0.34 16 45 H 0.11 0.56 7.92 -2.39 -0.02 0.54 16 46 H 0.08 0.92 4.51 -2.39 -0.01 0.90 16 47 H 0.17 0.75 8.03 -2.39 -0.02 0.73 16 48 H 0.12 2.02 7.38 -2.38 -0.02 2.00 16 49 H 0.42 4.96 9.10 -74.06 -0.67 4.28 16 Total: -1.00 -101.98 396.50 3.58 -98.40 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -0.10 Total: 10.72 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 4.75 Total: 4.43 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.69 Total: -86.97 kcal Atomic # 8 Polarization: -73.71 SS G_CDS: -0.41 Total: -74.12 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -101.98 3.58 -98.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605582166.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.047 kcal (2) G-P(sol) polarization free energy of solvation -101.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds