Wall clock time and date at job start Sat Apr 11 2020 06:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00268 * 2 1 4 4 H 1.48502 * 109.46521 * 239.99871 * 3 2 1 5 5 H 1.48499 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47342 * 119.99980 * 3 2 1 7 7 C 1.37875 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00222 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47153 * 185.02785 * 9 7 2 11 11 C 1.46896 * 111.00133 * 295.02578 * 10 9 7 12 12 C 1.53235 * 109.34190 * 187.25448 * 11 10 9 13 13 N 1.47079 * 108.52145 * 306.16435 * 12 11 10 14 14 C 1.34772 * 120.88775 * 231.18869 * 13 12 11 15 15 O 1.21283 * 119.99622 * 354.72113 * 14 13 12 16 16 C 1.50702 * 120.00256 * 174.72525 * 14 13 12 17 17 C 1.53002 * 109.54161 * 61.48188 * 16 14 13 18 18 C 1.50695 * 109.47153 * 61.96541 * 17 16 14 19 19 O 1.20821 * 120.00236 * 352.74589 * 18 17 16 20 20 O 1.34229 * 119.99940 * 172.75389 * 18 17 16 21 21 C 1.53172 * 109.54326 * 181.65885 * 16 14 13 22 22 C 1.53105 * 109.15840 * 63.06285 * 21 16 14 23 23 O 1.42902 * 109.48680 * 57.47511 * 22 21 16 24 24 C 1.42899 * 114.09642 * 298.88821 * 23 22 21 25 25 C 1.53094 * 109.41721 * 61.15982 * 24 23 22 26 26 C 1.47084 * 118.23320 * 51.45826 * 13 12 11 27 27 C 1.46906 * 111.00060 * 59.32484 * 10 9 7 28 28 H 0.97004 * 119.99420 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47806 * 65.02912 * 9 7 2 30 30 H 1.09003 * 109.47331 * 305.02523 * 9 7 2 31 31 H 1.09000 * 109.49344 * 67.28991 * 11 10 9 32 32 H 1.09000 * 109.49220 * 307.21203 * 11 10 9 33 33 H 1.09003 * 109.63334 * 186.46173 * 12 11 10 34 34 H 1.09003 * 109.79321 * 65.96985 * 12 11 10 35 35 H 1.09002 * 109.47093 * 301.96116 * 17 16 14 36 36 H 1.09003 * 109.46709 * 181.96176 * 17 16 14 37 37 H 0.96702 * 117.00307 * 180.02562 * 20 18 17 38 38 H 1.09005 * 109.52351 * 182.88125 * 21 16 14 39 39 H 1.08998 * 109.52559 * 303.07223 * 21 16 14 40 40 H 1.08994 * 109.40689 * 297.49406 * 22 21 16 41 41 H 1.09007 * 109.49074 * 177.50910 * 22 21 16 42 42 H 1.08998 * 109.48272 * 301.17384 * 24 23 22 43 43 H 1.09005 * 109.48965 * 181.14539 * 24 23 22 44 44 H 1.08998 * 109.52751 * 182.48573 * 25 24 23 45 45 H 1.09003 * 109.57528 * 62.32452 * 25 24 23 46 46 H 1.09000 * 109.63028 * 68.25400 * 26 13 12 47 47 H 1.09000 * 109.62668 * 188.83060 * 26 13 12 48 48 H 1.09001 * 109.48917 * 292.70896 * 27 10 9 49 49 H 1.09005 * 109.48874 * 52.76168 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2008 -3.6131 0.1225 11 6 3.0763 -3.6897 -1.0545 12 6 3.9243 -4.9635 -0.9742 13 7 4.6210 -4.9800 0.3211 14 6 5.9520 -5.1809 0.3883 15 8 6.5767 -5.4462 -0.6169 16 6 6.6640 -5.0762 1.7123 17 6 6.1118 -6.1294 2.6751 18 6 6.3733 -7.5051 2.1183 19 8 6.8229 -7.6304 1.0039 20 8 6.1065 -8.5913 2.8605 21 6 8.1643 -5.3061 1.5069 22 6 8.7235 -4.2006 0.6073 23 8 8.4610 -2.9264 1.1985 24 6 7.0720 -2.6378 1.3697 25 6 6.4468 -3.6791 2.3017 26 6 3.8256 -4.7775 1.5416 27 6 2.9823 -3.5053 1.3618 28 1 -0.4849 0.8401 -0.0004 29 1 0.6938 -2.5972 -0.9312 30 1 0.5581 -2.5187 0.8418 31 1 3.7304 -2.8181 -1.0786 32 1 2.4685 -3.7139 -1.9590 33 1 4.6551 -4.9685 -1.7829 34 1 3.2820 -5.8403 -1.0557 35 1 5.0383 -5.9841 2.7957 36 1 6.6030 -6.0298 3.6431 37 1 6.2910 -9.4523 2.4608 38 1 8.6721 -5.2811 2.4711 39 1 8.3231 -6.2761 1.0357 40 1 8.2453 -4.2530 -0.3707 41 1 9.7994 -4.3338 0.4934 42 1 6.5721 -2.6697 0.4016 43 1 6.9578 -1.6450 1.8052 44 1 5.3783 -3.4866 2.3985 45 1 6.9178 -3.6205 3.2830 46 1 3.1712 -5.6350 1.6987 47 1 4.4909 -4.6596 2.3968 48 1 3.6377 -2.6362 1.3040 49 1 2.3062 -3.3952 2.2097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605586326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:16 Heat of formation + Delta-G solvation = -140.465959 kcal Electronic energy + Delta-G solvation = -33085.349547 eV Core-core repulsion = 28820.463133 eV Total energy + Delta-G solvation = -4264.886414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.73083 -39.96492 -38.58167 -37.33994 -36.40091 -35.29898 -34.27022 -32.36523 -31.27232 -30.55427 -29.67339 -28.28006 -25.73332 -24.68459 -23.94467 -23.14509 -22.82057 -21.51224 -21.44086 -19.91094 -18.56907 -18.25069 -17.19018 -16.56645 -16.41349 -16.23735 -16.01683 -15.79314 -15.56716 -15.27289 -14.89413 -14.59047 -14.41764 -14.16274 -13.84745 -13.71808 -13.58094 -13.15211 -12.95459 -12.65736 -12.46497 -12.26123 -12.17832 -11.97516 -11.86549 -11.71387 -11.36382 -11.18779 -11.09340 -11.06028 -10.98092 -10.74512 -10.68535 -10.47786 -10.39481 -10.21098 -9.97287 -9.76398 -9.54188 -9.23794 -8.51731 -8.42448 -7.33574 -6.11809 -4.21670 1.98470 2.69327 2.78139 3.10984 3.22610 3.28643 3.30851 3.89410 4.16876 4.25196 4.33105 4.45999 4.67739 4.76328 4.87988 4.98092 5.05853 5.09043 5.15187 5.18916 5.21542 5.38876 5.43314 5.44565 5.54442 5.61466 5.64496 5.69454 5.80487 5.82650 5.86871 5.95549 6.00254 6.06933 6.11035 6.32748 6.33988 6.50633 6.62525 6.72674 7.12941 7.21956 7.41151 7.57323 7.66657 7.79545 7.89169 8.11111 8.17418 8.35861 8.87610 9.46061 10.93319 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.003980 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.297792 B = 7033.309846 C = 7997.881911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.539 5.539 11 C 0.050 3.950 12 C 0.118 3.882 13 N -0.607 5.607 14 C 0.529 3.471 15 O -0.524 6.524 16 C -0.066 4.066 17 C -0.123 4.123 18 C 0.469 3.531 19 O -0.488 6.488 20 O -0.519 6.519 21 C -0.138 4.138 22 C 0.052 3.948 23 O -0.385 6.385 24 C 0.062 3.938 25 C -0.160 4.160 26 C 0.084 3.916 27 C 0.050 3.950 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.410 0.590 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.095 0.905 48 H 0.047 0.953 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.422 -13.310 8.171 19.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.263 5.263 11 C -0.079 4.079 12 C -0.005 4.005 13 N -0.341 5.341 14 C 0.316 3.684 15 O -0.400 6.400 16 C -0.069 4.069 17 C -0.160 4.160 18 C 0.311 3.689 19 O -0.374 6.374 20 O -0.331 6.331 21 C -0.175 4.175 22 C -0.024 4.024 23 O -0.304 6.304 24 C -0.015 4.015 25 C -0.197 4.197 26 C -0.039 4.039 27 C -0.079 4.079 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.269 0.731 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.113 0.887 48 H 0.065 0.935 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.501 -13.291 7.544 19.744 hybrid contribution 0.566 0.998 -0.260 1.177 sum 13.067 -12.292 7.284 19.362 Atomic orbital electron populations 1.69928 1.06014 1.27070 1.49702 1.24941 0.94740 0.99120 0.94738 0.86731 0.79740 0.83318 0.78709 1.20235 1.21136 1.20194 1.21661 0.93155 0.92048 1.52304 0.92682 1.19768 0.90675 0.85289 0.98004 1.62484 1.16865 1.46633 1.00348 1.22255 0.95220 0.95274 0.95167 1.21795 0.95115 0.98775 0.84776 1.48104 1.06480 1.71265 1.08257 1.20047 0.81699 0.76429 0.90251 1.90614 1.65410 1.47059 1.36906 1.20702 0.97394 0.95468 0.93351 1.21905 1.05950 0.87316 1.00842 1.23365 0.74525 0.87244 0.83783 1.90823 1.39975 1.86878 1.19754 1.84514 1.80290 1.18103 1.50240 1.22247 0.91778 1.02291 1.01230 1.22775 1.00832 0.81906 0.96894 1.87893 1.23898 1.35859 1.82712 1.22522 0.82145 0.98269 0.98546 1.22653 1.03864 0.92522 1.00665 1.22699 0.94401 0.99845 0.86922 1.22327 0.96246 0.94379 0.94986 0.92656 0.95308 0.94558 0.94030 0.90394 0.89654 0.91576 0.85633 0.86496 0.73129 0.91091 0.88251 0.90662 0.89215 0.92962 0.88165 0.88381 0.89479 0.91002 0.88725 0.93532 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.55 -14.26 7.75 -34.44 -0.27 -14.53 16 8 H 0.06 1.41 5.88 -52.48 -0.31 1.11 16 9 C 0.19 4.50 5.11 -4.98 -0.03 4.47 16 10 N -0.54 -10.45 4.83 -235.47 -1.14 -11.59 16 11 C 0.05 0.92 5.24 -3.71 -0.02 0.90 16 12 C 0.12 1.89 6.58 -3.60 -0.02 1.87 16 13 N -0.61 -9.02 3.00 -172.18 -0.52 -9.54 16 14 C 0.53 8.01 3.66 -10.99 -0.04 7.97 16 15 O -0.52 -9.64 12.69 -10.14 -0.13 -9.77 16 16 C -0.07 -0.77 0.25 -155.48 -0.04 -0.81 16 17 C -0.12 -1.11 4.55 -27.88 -0.13 -1.24 16 18 C 0.47 5.00 7.73 36.00 0.28 5.28 16 19 O -0.49 -6.99 12.88 -24.36 -0.31 -7.30 16 20 O -0.52 -4.12 13.42 -39.26 -0.53 -4.64 16 21 C -0.14 -1.66 4.19 -26.59 -0.11 -1.77 16 22 C 0.05 0.70 6.55 37.21 0.24 0.95 16 23 O -0.38 -5.49 10.77 -35.23 -0.38 -5.86 16 24 C 0.06 0.83 6.62 37.21 0.25 1.07 16 25 C -0.16 -1.73 4.59 -26.59 -0.12 -1.85 16 26 C 0.08 1.08 4.28 -3.37 -0.01 1.06 16 27 C 0.05 0.83 4.90 -3.46 -0.02 0.81 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 30 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.85 6.92 -51.93 -0.36 0.49 16 32 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 33 H 0.09 1.42 7.10 -51.93 -0.37 1.05 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.13 1.02 4.66 -51.93 -0.24 0.78 16 36 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.41 1.73 9.10 45.56 0.41 2.14 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.36 5.60 -51.93 -0.29 1.07 16 40 H 0.08 1.20 5.87 -51.93 -0.31 0.89 16 41 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 42 H 0.05 0.81 7.38 -51.93 -0.38 0.43 16 43 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.10 1.05 4.28 -51.93 -0.22 0.83 16 45 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.10 0.96 2.61 -51.93 -0.14 0.82 16 48 H 0.05 0.85 6.42 -51.93 -0.33 0.52 16 49 H 0.08 1.30 8.11 -51.93 -0.42 0.87 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -32.98 362.69 -8.26 -41.25 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.31 Total: 4.78 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.14 Total: 5.92 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.92 Total: -45.50 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -1.35 Total: -27.58 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.98 -8.26 -41.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605586326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.216 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds