Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99646 * 2 1 4 4 H 1.48494 * 109.47482 * 270.00202 * 3 2 1 5 5 H 1.48501 * 109.47014 * 30.00431 * 3 2 1 6 6 H 1.48499 * 109.47077 * 150.00109 * 3 2 1 7 7 C 1.37873 * 120.00484 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99782 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00109 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.50267 * 60.08281 * 9 7 2 11 11 C 1.53118 * 109.50725 * 300.00155 * 9 7 2 12 12 C 1.53119 * 109.16122 * 182.39970 * 11 9 7 13 13 C 1.53041 * 109.27700 * 57.65957 * 12 11 9 14 14 N 1.46845 * 109.52168 * 300.81889 * 13 12 11 15 15 C 1.38791 * 111.00215 * 185.83715 * 14 13 12 16 16 N 1.32141 * 119.77856 * 304.22917 * 15 14 13 17 17 C 1.32414 * 122.12339 * 180.28440 * 16 15 14 18 18 C 1.38207 * 120.55881 * 359.72272 * 17 16 15 19 19 C 1.38709 * 119.59799 * 359.97378 * 18 17 16 20 20 C 1.39394 * 118.59580 * 0.02562 * 19 18 17 21 21 C 1.48361 * 120.65871 * 180.02562 * 20 19 18 22 22 N 1.34081 * 126.67692 * 174.46593 * 21 20 19 23 23 N 1.28991 * 107.26517 * 180.02562 * 22 21 20 24 24 N 1.28725 * 108.95264 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.33804 * 179.73450 * 24 23 22 26 26 N 1.28870 * 109.32767 * 0.02562 * 24 23 22 27 27 C 1.51275 * 109.93765 * 179.97438 * 18 17 16 28 28 C 1.54355 * 105.12654 * 342.83576 * 27 18 17 29 29 C 1.51545 * 129.87954 * 179.72502 * 17 16 15 30 30 C 1.46850 * 111.19826 * 61.74090 * 14 13 12 31 31 H 0.97003 * 120.00406 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.52027 * 62.49793 * 11 9 7 33 33 H 1.08998 * 109.57464 * 302.34233 * 11 9 7 34 34 H 1.08997 * 109.50902 * 297.71735 * 12 11 9 35 35 H 1.09000 * 109.50008 * 177.59339 * 12 11 9 36 36 H 1.08994 * 109.46190 * 180.79840 * 13 12 11 37 37 H 1.09008 * 109.45285 * 60.82752 * 13 12 11 38 38 H 1.08003 * 120.70406 * 180.02562 * 19 18 17 39 39 H 1.09003 * 110.31163 * 101.74823 * 27 18 17 40 40 H 1.09005 * 110.31110 * 223.92260 * 27 18 17 41 41 H 1.09001 * 110.82015 * 268.13280 * 28 27 18 42 42 H 1.08995 * 110.99301 * 144.65746 * 28 27 18 43 43 H 1.09004 * 110.29569 * 316.19435 * 29 17 16 44 44 H 1.08999 * 110.29474 * 78.22755 * 29 17 16 45 45 H 1.08996 * 109.46651 * 58.27617 * 30 14 13 46 46 H 1.09005 * 109.45970 * 178.23879 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 1 3.8758 -0.6816 0.8894 11 6 4.0223 -0.4719 -1.2511 12 6 5.5523 -0.5286 -1.2743 13 6 6.0042 -1.9905 -1.2430 14 7 5.4909 -2.6368 -0.0284 15 6 5.9898 -3.9258 0.0979 16 7 5.8167 -4.7954 -0.8818 17 6 6.2682 -6.0380 -0.8082 18 6 6.9516 -6.4722 0.3119 19 6 7.1654 -5.5966 1.3662 20 6 6.6789 -4.2945 1.2612 21 6 6.8822 -3.3199 2.3611 22 7 6.5603 -2.0184 2.3477 23 7 6.8996 -1.5283 3.4916 24 7 7.4147 -2.4633 4.2109 25 1 7.7539 -2.3547 5.1131 26 7 7.4148 -3.5649 3.5421 27 6 7.3539 -7.9205 0.1415 28 6 6.4701 -8.4516 -1.0071 29 6 6.1658 -7.1700 -1.8106 30 6 4.0226 -2.6364 -0.0067 31 1 -0.4851 0.8400 0.0004 32 1 3.6967 0.5682 -1.2296 33 1 3.6261 -0.9592 -2.1419 34 1 5.9492 -0.0063 -0.4038 35 1 5.9202 -0.0535 -2.1837 36 1 7.0932 -2.0340 -1.2451 37 1 5.6183 -2.5086 -2.1209 38 1 7.6975 -5.9168 2.2498 39 1 8.4077 -7.9912 -0.1282 40 1 7.1588 -8.4777 1.0578 41 1 5.5520 -8.8916 -0.6178 42 1 7.0145 -9.1720 -1.6176 43 1 5.1601 -7.2151 -2.2286 44 1 6.8995 -7.0383 -2.6059 45 1 3.6461 -3.1516 -0.8903 46 1 3.6725 -3.1492 0.8893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606346817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = 175.497830 kcal Electronic energy + Delta-G solvation = -30217.255075 eV Core-core repulsion = 26337.964301 eV Total energy + Delta-G solvation = -3879.290774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.20417 -40.94456 -38.56443 -36.27818 -34.21716 -33.82763 -33.25596 -31.97947 -31.64744 -30.19902 -28.73226 -27.71805 -24.86573 -24.85538 -24.14807 -23.84899 -22.08359 -21.17389 -21.00941 -20.78276 -19.07946 -18.73310 -17.06194 -16.91997 -16.62971 -16.28647 -15.88344 -15.69874 -14.67072 -14.51926 -13.96308 -13.74715 -13.71441 -13.35606 -13.18717 -13.05856 -12.93560 -12.71998 -12.46745 -12.30223 -12.11949 -12.02011 -11.78114 -11.44316 -11.41290 -11.05714 -11.04955 -10.94174 -10.83609 -10.81090 -10.42626 -9.99716 -9.92766 -9.62749 -9.50154 -9.48730 -9.00234 -8.84774 -8.41608 -8.39606 -7.96335 -5.97038 -3.95525 0.59845 1.15521 1.39825 2.37784 2.53388 3.38295 3.49229 3.55895 3.58212 3.71627 3.94074 4.16129 4.20564 4.49572 4.53339 4.66270 4.75291 4.93257 5.09893 5.19117 5.35476 5.43991 5.45570 5.50690 5.56585 5.58903 5.65847 5.67127 5.70247 5.80232 5.90231 5.94338 5.97539 6.08641 6.12595 6.27168 6.36140 6.39451 6.48073 6.52429 6.64493 6.73081 6.94021 6.97453 7.31265 7.39780 7.74200 7.80671 7.93959 7.98371 8.43421 8.62314 9.06113 9.66150 11.16217 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.004238 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.445630 B = 6604.627997 C = 8135.035603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.071 3.929 3 Si 0.885 3.115 4 H -0.280 1.280 5 H -0.300 1.300 6 H -0.259 1.259 7 C -0.511 4.511 8 H 0.071 0.929 9 C 0.023 3.977 10 H 0.042 0.958 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.075 3.925 14 N -0.475 5.475 15 C 0.357 3.643 16 N -0.503 5.503 17 C 0.149 3.851 18 C -0.170 4.170 19 C -0.024 4.024 20 C -0.051 4.051 21 C 0.229 3.771 22 N -0.204 5.204 23 N -0.061 5.061 24 N -0.238 5.238 25 H 0.470 0.530 26 N -0.307 5.307 27 C -0.072 4.072 28 C -0.119 4.119 29 C -0.074 4.074 30 C 0.090 3.910 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.040 0.960 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.856 -14.647 2.955 24.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.184 1.184 7 C -0.549 4.549 8 H 0.089 0.911 9 C 0.004 3.996 10 H 0.060 0.940 11 C -0.158 4.158 12 C -0.155 4.155 13 C -0.052 4.052 14 N -0.198 5.198 15 C 0.125 3.875 16 N -0.214 5.214 17 C 0.009 3.991 18 C -0.172 4.172 19 C -0.052 4.052 20 C -0.058 4.058 21 C -0.051 4.051 22 N -0.076 5.076 23 N -0.056 5.056 24 N -0.082 5.082 25 H 0.323 0.677 26 N -0.160 5.160 27 C -0.110 4.110 28 C -0.156 4.156 29 C -0.112 4.112 30 C -0.035 4.035 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.350 -13.341 2.894 23.681 hybrid contribution 0.685 0.013 0.522 0.861 sum 20.035 -13.328 3.416 24.304 Atomic orbital electron populations 1.69904 1.06329 1.26823 1.51265 1.24948 0.94626 0.98995 0.94413 0.86858 0.80302 0.83391 0.77882 1.20726 1.22814 1.18353 1.20978 0.88763 0.94430 1.50741 0.91102 1.19150 0.95759 0.90553 0.94126 0.94010 1.22010 0.92630 1.00172 1.01032 1.21646 0.98089 0.94710 1.01088 1.21930 0.98154 0.95317 0.89797 1.60294 1.11649 1.09041 1.38852 1.19887 0.90381 0.89819 0.87375 1.67226 1.20283 1.02742 1.31174 1.21903 0.91718 0.91013 0.94458 1.21272 1.02585 0.97761 0.95628 1.20907 0.95840 0.90459 0.97979 1.17743 1.04199 0.91621 0.92218 1.23083 0.98919 0.91788 0.91307 1.76624 1.15220 1.06645 1.09136 1.79110 1.10114 1.17339 0.99076 1.47701 1.40248 1.03163 1.17135 0.67663 1.74812 1.23288 1.11373 1.06525 1.20900 1.00104 0.90459 0.99527 1.22303 1.00281 0.96543 0.96518 1.21058 1.03794 0.90014 0.96301 1.22094 0.80966 1.00313 1.00079 0.92807 0.93527 0.92493 0.91289 0.92661 0.92346 0.93690 0.84061 0.90010 0.90384 0.90537 0.89958 0.89422 0.89172 0.94155 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.40 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.11 5.45 -17.82 -0.10 2.02 16 3 Si 0.89 22.82 24.35 -169.99 -4.14 18.68 16 4 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 7 C -0.51 -14.79 9.15 -34.44 -0.31 -15.10 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.02 0.58 1.85 -91.69 -0.17 0.41 16 10 H 0.04 1.10 7.21 -51.93 -0.37 0.73 16 11 C -0.12 -2.73 4.73 -26.61 -0.13 -2.85 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 13 C 0.07 1.34 5.19 -3.83 -0.02 1.32 16 14 N -0.48 -9.13 2.88 -173.04 -0.50 -9.63 16 15 C 0.36 6.22 5.31 -155.07 -0.82 5.40 16 16 N -0.50 -8.34 9.70 -8.13 -0.08 -8.41 16 17 C 0.15 1.97 7.31 -81.94 -0.60 1.37 16 18 C -0.17 -1.93 6.14 -104.18 -0.64 -2.57 16 19 C -0.02 -0.30 9.82 -38.98 -0.38 -0.68 16 20 C -0.05 -0.79 5.91 -104.59 -0.62 -1.40 16 21 C 0.23 3.65 7.90 -156.29 -1.23 2.42 16 22 N -0.20 -3.64 11.00 32.14 0.35 -3.29 16 23 N -0.06 -0.92 13.47 60.35 0.81 -0.11 16 24 N -0.24 -2.65 7.90 60.35 0.48 -2.18 16 25 H 0.47 2.73 8.96 -340.37 -3.05 -0.32 16 26 N -0.31 -4.02 12.17 32.16 0.39 -3.63 16 27 C -0.07 -0.54 6.77 -26.89 -0.18 -0.72 16 28 C -0.12 -0.80 7.08 -25.34 -0.18 -0.98 16 29 C -0.07 -0.69 6.77 -26.79 -0.18 -0.87 16 30 C 0.09 2.00 4.55 -3.83 -0.02 1.98 16 31 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 32 H 0.05 1.11 3.34 -51.93 -0.17 0.93 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.04 0.82 7.94 -51.92 -0.41 0.41 16 38 H 0.14 1.42 7.97 -52.48 -0.42 1.01 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.92 8.12 -51.93 -0.42 0.50 16 46 H 0.06 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -35.02 365.31 -11.25 -46.27 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -9.10 Total: -2.95 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -5.75 Total: -12.63 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 2.23 Total: -54.87 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.14 Total: 18.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.02 -11.25 -46.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606346817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.770 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds