Wall clock time and date at job start Sat Apr 11 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48504 * 109.46980 * 272.90791 * 3 2 1 5 5 H 1.48502 * 109.46959 * 32.90376 * 3 2 1 6 6 H 1.48493 * 109.47333 * 152.90630 * 3 2 1 7 7 C 1.38814 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00264 * 339.37088 * 7 2 1 9 9 N 1.36939 * 119.99595 * 159.36667 * 7 2 1 10 10 C 1.46930 * 120.63076 * 332.62792 * 9 7 2 11 11 C 1.53190 * 108.77744 * 233.58645 * 10 9 7 12 12 C 1.53040 * 109.31160 * 305.36885 * 11 10 9 13 13 N 1.46504 * 109.45796 * 181.38345 * 12 11 10 14 14 C 1.34777 * 119.99739 * 155.00093 * 13 12 11 15 15 O 1.21284 * 120.00011 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99791 * 180.02562 * 14 13 12 17 17 H 1.09003 * 110.41975 * 305.85359 * 16 14 13 18 18 C 1.54479 * 110.37338 * 68.16379 * 16 14 13 19 19 C 1.54513 * 104.06105 * 142.81085 * 18 16 14 20 20 C 1.54473 * 104.06397 * 359.97438 * 19 18 16 21 21 H 1.09003 * 110.37216 * 94.85509 * 20 19 18 22 22 C 1.53000 * 110.37174 * 217.18841 * 20 19 18 23 23 C 1.53005 * 109.47071 * 181.83342 * 22 20 19 24 24 C 1.50694 * 109.47020 * 180.02562 * 23 22 20 25 25 O 1.20830 * 120.00421 * 359.97438 * 24 23 22 26 26 O 1.34226 * 120.00258 * 180.02562 * 24 23 22 27 27 O 1.44422 * 104.80575 * 336.02159 * 20 19 18 28 28 C 1.53041 * 109.54094 * 61.36365 * 12 11 10 29 29 C 1.46920 * 120.63167 * 152.61056 * 9 7 2 30 30 H 0.96994 * 119.99972 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.58433 * 113.80202 * 10 9 7 32 32 H 1.08998 * 109.58537 * 353.37729 * 10 9 7 33 33 H 1.08998 * 109.49549 * 185.41600 * 11 10 9 34 34 H 1.08999 * 109.49526 * 65.31474 * 11 10 9 35 35 H 1.08998 * 109.45859 * 301.35896 * 12 11 10 36 36 H 0.96995 * 119.99947 * 335.00116 * 13 12 11 37 37 H 1.08997 * 110.51078 * 261.45297 * 18 16 14 38 38 H 1.08999 * 110.51215 * 24.16571 * 18 16 14 39 39 H 1.09001 * 110.50886 * 241.35283 * 19 18 16 40 40 H 1.09001 * 110.62833 * 118.70195 * 19 18 16 41 41 H 1.08993 * 109.47470 * 301.83391 * 22 20 19 42 42 H 1.09006 * 109.46764 * 61.83907 * 22 20 19 43 43 H 1.08993 * 109.47013 * 300.00328 * 23 22 20 44 44 H 1.08997 * 109.46892 * 60.00336 * 23 22 20 45 45 H 0.96701 * 117.00734 * 179.97438 * 26 24 23 46 46 H 1.09004 * 109.49701 * 58.58471 * 28 12 11 47 47 H 1.08993 * 109.49844 * 178.68139 * 28 12 11 48 48 H 1.09004 * 109.58647 * 246.20144 * 29 9 7 49 49 H 1.09008 * 109.58445 * 6.48170 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4362 2.0820 -1.3983 5 1 1.4797 2.6342 0.7606 6 1 3.5772 1.4233 0.6376 7 6 2.0103 -1.2022 0.0005 8 1 1.5223 -2.1073 0.3304 9 7 3.3138 -1.2403 -0.4174 10 6 3.8178 -0.2592 -1.3881 11 6 4.4631 -1.0093 -2.5575 12 6 5.5297 -1.9654 -2.0187 13 7 6.1719 -2.6604 -3.1372 14 6 7.4223 -3.1447 -3.0009 15 8 8.0159 -3.0047 -1.9526 16 6 8.0831 -3.8591 -4.1516 17 1 7.4523 -4.6744 -4.5057 18 6 8.3785 -2.8696 -5.3006 19 6 9.7374 -3.3429 -5.8635 20 6 10.1025 -4.5618 -4.9876 21 1 9.7815 -5.4852 -5.4696 22 6 11.6089 -4.5943 -4.7215 23 6 11.9536 -5.8328 -3.8918 24 6 13.4371 -5.8645 -3.6293 25 8 14.1462 -4.9868 -4.0617 26 8 13.9712 -6.8682 -2.9158 27 8 9.3784 -4.3602 -3.7544 28 6 4.8757 -2.9905 -1.0894 29 6 4.2351 -2.2629 0.0966 30 1 -0.4850 0.8400 -0.0004 31 1 4.5601 0.3799 -0.9098 32 1 2.9913 0.3490 -1.7555 33 1 4.9258 -0.2940 -3.2375 34 1 3.7007 -1.5777 -3.0902 35 1 6.2785 -1.3992 -1.4649 36 1 5.6972 -2.7720 -3.9756 37 1 7.6053 -2.9319 -6.0664 38 1 8.4571 -1.8522 -4.9177 39 1 10.4878 -2.5593 -5.7589 40 1 9.6384 -3.6386 -6.9079 41 1 12.1446 -4.6317 -5.6699 42 1 11.9006 -3.6977 -4.1744 43 1 11.4178 -5.7954 -2.9434 44 1 11.6619 -6.7293 -4.4389 45 1 14.9275 -6.8457 -2.7738 46 1 4.1094 -3.5403 -1.6359 47 1 5.6320 -3.6854 -0.7246 48 1 5.0114 -1.7872 0.6960 49 1 3.6843 -2.9753 0.7109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188426.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:43 Heat of formation + Delta-G solvation = -159.248876 kcal Electronic energy + Delta-G solvation = -29840.528073 eV Core-core repulsion = 25574.827171 eV Total energy + Delta-G solvation = -4265.700903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78793 -40.42734 -39.08524 -37.49910 -36.58909 -34.61694 -34.15955 -32.68420 -32.07672 -30.55535 -30.37664 -29.22956 -26.11200 -24.70340 -23.19544 -22.82842 -21.81703 -21.63941 -21.08937 -20.35525 -19.62247 -18.49440 -17.54830 -17.20442 -16.87771 -16.75650 -16.39696 -16.23946 -15.67100 -15.18924 -14.65660 -14.40042 -14.17974 -14.14336 -13.87163 -13.81757 -13.71632 -13.48844 -13.12492 -12.92436 -12.43110 -12.38025 -12.18234 -12.10154 -12.01040 -11.92657 -11.79799 -11.51138 -11.48428 -11.15068 -11.00532 -10.94448 -10.84393 -10.58007 -10.30419 -10.29578 -10.14602 -9.86449 -9.58701 -9.46814 -8.86252 -8.64644 -7.00841 -5.96521 -3.32418 1.81812 2.57027 2.63442 2.82072 3.29499 3.48030 3.51372 3.67726 4.09637 4.20323 4.40778 4.45227 4.51256 4.57824 4.61377 4.74329 4.83552 4.93950 5.01946 5.07093 5.12396 5.16283 5.24714 5.31328 5.34944 5.37860 5.51246 5.53283 5.60520 5.64101 5.74520 5.79803 6.01766 6.06622 6.10723 6.14251 6.29559 6.35674 6.40441 6.55602 6.62781 6.63871 6.71574 6.90431 7.48766 7.54484 7.94386 8.24893 8.31401 8.92195 9.70216 10.07786 11.19393 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025166 B = 0.001964 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.335305 B =14253.219340 C =14639.185789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.152 3.848 13 N -0.721 5.721 14 C 0.516 3.484 15 O -0.520 6.520 16 C 0.058 3.942 17 H 0.094 0.906 18 C -0.145 4.145 19 C -0.148 4.148 20 C 0.071 3.929 21 H 0.076 0.924 22 C -0.101 4.101 23 C -0.114 4.114 24 C 0.480 3.520 25 O -0.519 6.519 26 O -0.518 6.518 27 O -0.340 6.340 28 C -0.141 4.141 29 C 0.150 3.850 30 H 0.262 0.738 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.397 0.603 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.106 0.894 45 H 0.410 0.590 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.025 0.975 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.746 -12.115 -15.504 30.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.049 3.951 13 N -0.373 5.373 14 C 0.300 3.700 15 O -0.394 6.394 16 C -0.003 4.003 17 H 0.112 0.888 18 C -0.183 4.183 19 C -0.186 4.186 20 C 0.013 3.987 21 H 0.094 0.906 22 C -0.139 4.139 23 C -0.152 4.152 24 C 0.323 3.677 25 O -0.407 6.407 26 O -0.330 6.330 27 O -0.258 6.258 28 C -0.181 4.181 29 C 0.024 3.976 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.231 0.769 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.124 0.876 45 H 0.268 0.732 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.043 0.957 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.869 -11.733 -14.648 29.584 hybrid contribution 0.710 0.940 -0.565 1.307 sum 23.580 -10.793 -15.214 30.066 Atomic orbital electron populations 1.69837 1.05708 1.26546 1.53019 1.25293 0.95247 0.97567 0.99550 0.86973 0.80147 0.84692 0.76996 1.21658 1.23097 1.19491 1.18928 0.84880 0.94798 1.40098 0.89623 1.44408 1.08704 1.33372 1.46504 1.21310 0.97295 0.92057 0.89070 1.22346 0.97446 0.98388 0.99794 1.21009 0.94281 0.93116 0.86723 1.46190 1.15162 1.58638 1.17351 1.20121 0.81744 0.79423 0.88741 1.90738 1.63605 1.56434 1.28670 1.22869 0.87692 0.96489 0.93268 0.88794 1.22906 0.98061 1.00234 0.97058 1.22968 0.97269 0.98346 0.99995 1.23085 0.92320 0.97905 0.85412 0.90614 1.21504 0.93286 0.98009 1.01082 1.21379 0.87969 1.01288 1.04528 1.23614 0.92261 0.78076 0.73794 1.90731 1.63234 1.37813 1.48968 1.84551 1.30940 1.49174 1.68347 1.89288 1.24260 1.85193 1.27045 1.22380 0.99397 0.98004 0.98363 1.20900 0.92341 0.91365 0.93015 0.92770 0.95470 0.90474 0.92240 0.91081 0.89894 0.76946 0.89424 0.89943 0.90008 0.89915 0.89467 0.89738 0.86522 0.87567 0.73156 0.91778 0.92223 0.95686 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.97 55.49 0.78 -26.76 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 22.15 24.35 -169.99 -4.14 18.02 16 4 H -0.29 -6.92 6.62 56.52 0.37 -6.54 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.73 6.64 56.52 0.38 -6.36 16 7 C -0.26 -7.14 10.04 -15.06 -0.15 -7.29 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.61 -14.19 2.77 -172.32 -0.48 -14.67 16 10 C 0.13 2.73 4.20 -3.71 -0.02 2.71 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.15 2.39 2.41 -67.89 -0.16 2.22 16 13 N -0.72 -8.84 5.08 -53.76 -0.27 -9.11 16 14 C 0.52 6.95 7.03 -10.99 -0.08 6.87 16 15 O -0.52 -9.51 16.22 -13.65 -0.22 -9.73 16 16 C 0.06 0.56 3.71 -27.11 -0.10 0.46 16 17 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.14 -1.02 6.62 -25.16 -0.17 -1.18 16 19 C -0.15 -0.89 6.63 -25.16 -0.17 -1.06 16 20 C 0.07 0.49 3.27 -25.96 -0.08 0.41 16 21 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 22 C -0.10 -0.72 4.14 -26.73 -0.11 -0.83 16 23 C -0.11 -0.76 5.73 -27.88 -0.16 -0.91 16 24 C 0.48 3.91 8.33 36.00 0.30 4.21 16 25 O -0.52 -5.82 16.74 -18.75 -0.31 -6.13 16 26 O -0.52 -3.26 13.42 -39.25 -0.53 -3.78 16 27 O -0.34 -3.75 10.26 -54.43 -0.56 -4.31 16 28 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 29 C 0.15 3.01 6.51 -3.72 -0.02 2.99 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.03 0.58 7.08 -51.93 -0.37 0.21 16 32 H 0.08 1.78 4.50 -51.93 -0.23 1.54 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 36 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 39 H 0.08 0.52 7.87 -51.93 -0.41 0.12 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.12 0.88 7.91 -51.93 -0.41 0.47 16 44 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.41 0.94 9.10 45.56 0.41 1.35 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 1.32 7.93 -51.92 -0.41 0.91 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -36.69 390.65 -8.41 -45.10 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.25 Total: 1.33 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.31 Total: 4.17 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.02 Total: -50.54 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -1.62 Total: -23.96 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.02 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.69 -8.41 -45.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188426.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.149 kcal (2) G-P(sol) polarization free energy of solvation -36.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds