Wall clock time and date at job start Sat Apr 11 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30295 * 126.34805 * 2 1 4 4 N 1.28527 * 110.05309 * 180.31257 * 3 2 1 5 5 C 1.31219 * 109.86020 * 359.71443 * 4 3 2 6 6 N 1.38583 * 126.47018 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99865 * 305.34915 * 6 5 4 8 8 C 1.46898 * 110.99968 * 69.30621 * 6 5 4 9 9 H 1.09002 * 109.46971 * 54.99960 * 8 6 5 10 10 C 1.53000 * 109.47334 * 294.99703 * 8 6 5 11 11 C 1.50699 * 109.46800 * 174.99546 * 8 6 5 12 12 H 1.08002 * 120.00099 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99774 * 179.97438 * 11 8 6 14 14 N 1.31509 * 119.99898 * 0.02562 * 13 11 8 15 15 Si 1.86807 * 119.99888 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46684 * 120.00381 * 15 13 11 18 18 H 1.48500 * 109.46969 * 240.00210 * 15 13 11 19 19 N 1.36452 * 107.05109 * 0.02562 * 5 4 3 20 20 C 1.46506 * 127.13243 * 179.97438 * 19 5 4 21 21 C 1.50700 * 109.46866 * 84.16211 * 20 19 5 22 22 C 1.38543 * 126.21249 * 264.95186 * 21 20 19 23 23 N 1.31482 * 109.00682 * 180.02562 * 22 21 20 24 24 N 1.40042 * 108.91395 * 0.02562 * 23 22 21 25 25 C 1.36543 * 132.43086 * 180.02562 * 24 23 22 26 26 C 1.34930 * 120.65697 * 179.97438 * 25 24 23 27 27 C 1.40471 * 120.43385 * 0.02562 * 26 25 24 28 28 C 1.36066 * 119.59082 * 359.97438 * 27 26 25 29 29 C 1.37127 * 107.44649 * 359.97438 * 24 23 22 30 30 H 1.08998 * 109.46692 * 270.15599 * 1 2 3 31 31 H 1.08999 * 109.46910 * 30.15455 * 1 2 3 32 32 H 1.09000 * 109.46980 * 150.15752 * 1 2 3 33 33 H 1.09003 * 109.47302 * 64.80491 * 7 6 5 34 34 H 1.08999 * 109.46711 * 184.80133 * 7 6 5 35 35 H 1.09004 * 109.47513 * 304.80325 * 7 6 5 36 36 H 1.09001 * 109.46634 * 59.99947 * 10 8 6 37 37 H 1.08995 * 109.47371 * 180.02562 * 10 8 6 38 38 H 1.09005 * 109.46820 * 300.00628 * 10 8 6 39 39 H 0.97007 * 119.99810 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.46999 * 324.16190 * 20 19 5 41 41 H 1.08995 * 109.46832 * 204.16145 * 20 19 5 42 42 H 1.08004 * 125.50033 * 0.06184 * 22 21 20 43 43 H 1.07998 * 119.66902 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.78484 * 180.28480 * 26 25 24 45 45 H 1.07998 * 120.20711 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.38780 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 -0.0066 5 6 3.5946 -0.6208 -0.0050 6 7 4.7581 -1.3737 -0.0111 7 6 5.6240 -0.9952 -1.1357 8 6 5.4713 -1.2507 1.2672 9 1 4.8015 -1.5191 2.0842 10 6 5.9459 0.1923 1.4498 11 6 6.6615 -2.1751 1.2692 12 1 6.8677 -2.7918 0.4069 13 6 7.4878 -2.2326 2.3714 14 7 7.2369 -1.4813 3.4212 15 14 8.9636 -3.3779 2.3736 16 1 9.0247 -4.1089 1.0825 17 1 10.2059 -2.5840 2.5518 18 1 8.8336 -4.3506 3.4881 19 7 2.3174 -1.1013 0.0025 20 6 1.9010 -2.5059 0.0064 21 6 1.9045 -3.0270 1.4204 22 6 2.9381 -3.7130 2.0373 23 7 2.5819 -4.0075 3.2682 24 7 1.2898 -3.5181 3.4963 25 6 0.4699 -3.5551 4.5876 26 6 -0.7569 -2.9950 4.5458 27 6 -1.2115 -2.3639 3.3760 28 6 -0.4059 -2.3190 2.2803 29 6 0.8717 -2.9075 2.3419 30 1 -0.3632 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5114 33 1 5.9592 0.0338 -1.0060 34 1 6.4890 -1.6578 -1.1671 35 1 5.0666 -1.0809 -2.0685 36 1 5.0849 0.8608 1.4483 37 1 6.4754 0.2834 2.3981 38 1 6.6156 0.4606 0.6327 39 1 7.8181 -1.5220 4.1969 40 1 2.5931 -3.0917 -0.5985 41 1 0.8965 -2.5881 -0.4086 42 1 3.8841 -3.9647 1.5810 43 1 0.8068 -4.0375 5.4932 44 1 -1.3920 -3.0284 5.4187 45 1 -2.1939 -1.9164 3.3467 46 1 -0.7425 -1.8375 1.3741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001612529945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:49 Heat of formation + Delta-G solvation = 210.394456 kcal Electronic energy + Delta-G solvation = -30834.349210 eV Core-core repulsion = 26956.571667 eV Total energy + Delta-G solvation = -3877.777543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45973 -41.86799 -37.34980 -37.13494 -35.12699 -32.92483 -32.67483 -31.47644 -30.65945 -29.46623 -28.63830 -27.04763 -25.96580 -25.15549 -25.02353 -23.80038 -22.58716 -21.44880 -20.99931 -20.23483 -19.27324 -17.25119 -16.84333 -16.61266 -16.12015 -16.09403 -15.77390 -15.39189 -15.26658 -14.81392 -14.60699 -13.99880 -13.75916 -13.64471 -13.20905 -13.10914 -12.85112 -12.62825 -12.40881 -12.21569 -11.95236 -11.85082 -11.76883 -11.41775 -11.25647 -11.13813 -10.90217 -10.72122 -10.56969 -10.51941 -10.41837 -10.11894 -10.08276 -9.80430 -9.62227 -9.29477 -8.82751 -8.42348 -8.30511 -7.65715 -7.56471 -6.03254 -4.09830 0.66290 1.05467 2.21854 2.37923 2.62354 3.07310 3.29158 3.36287 3.38091 3.40415 3.45007 4.21267 4.37691 4.51105 4.61506 4.67991 4.70417 4.80149 4.83124 4.95426 5.08638 5.24390 5.29211 5.42026 5.47726 5.52942 5.63320 5.69405 5.74287 5.89207 5.93170 6.04606 6.09370 6.28184 6.31815 6.44454 6.61161 6.66756 6.69123 6.90024 6.92023 7.12990 7.16083 7.23762 7.60939 7.68536 7.71083 7.81005 7.98847 8.30667 8.53385 8.94265 9.37220 9.55417 11.03265 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.005019 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.985345 B = 5577.343940 C = 7404.092410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.152 3.848 3 N -0.298 5.298 4 N -0.317 5.317 5 C 0.379 3.621 6 N -0.468 5.468 7 C 0.047 3.953 8 C 0.228 3.772 9 H 0.037 0.963 10 C -0.174 4.174 11 C -0.507 4.507 12 H 0.066 0.934 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.285 1.285 19 N -0.464 5.464 20 C 0.204 3.796 21 C -0.280 4.280 22 C 0.129 3.871 23 N -0.311 5.311 24 N -0.277 5.277 25 C 0.121 3.879 26 C -0.176 4.176 27 C -0.081 4.081 28 C -0.125 4.125 29 C 0.119 3.881 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.260 0.740 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.203 0.797 43 H 0.167 0.833 44 H 0.152 0.848 45 H 0.139 0.861 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.346 -4.735 -2.802 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 N -0.139 5.139 4 N -0.161 5.161 5 C 0.023 3.977 6 N -0.195 5.195 7 C -0.101 4.101 8 C 0.124 3.876 9 H 0.054 0.946 10 C -0.234 4.234 11 C -0.546 4.546 12 H 0.084 0.916 13 C -0.138 4.138 14 N -0.524 5.524 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.211 1.211 19 N -0.158 5.158 20 C 0.080 3.920 21 C -0.292 4.292 22 C -0.049 4.049 23 N -0.133 5.133 24 N -0.042 5.042 25 C -0.005 4.005 26 C -0.198 4.198 27 C -0.104 4.104 28 C -0.144 4.144 29 C 0.000 4.000 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.220 0.780 43 H 0.184 0.816 44 H 0.170 0.830 45 H 0.157 0.843 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.454 -4.398 -1.598 19.038 hybrid contribution 0.573 -0.753 -0.217 0.971 sum -17.880 -5.151 -1.815 18.696 Atomic orbital electron populations 1.20211 0.84998 1.03696 1.03180 1.24483 0.96096 0.83224 1.07710 1.73915 0.97172 1.24469 1.18343 1.74724 1.10996 1.09060 1.21280 1.22874 0.86247 0.88295 1.00246 1.59421 1.02315 1.49500 1.08230 1.22211 0.96597 1.00950 0.90319 1.19346 0.92386 0.93653 0.82260 0.94556 1.22447 1.00062 0.97861 1.02993 1.21029 1.09101 1.22820 1.01637 0.91577 1.24895 0.97774 0.95762 0.95386 1.69928 1.38319 1.39023 1.05136 0.86464 0.82445 0.80575 0.78060 1.19615 1.21116 1.21079 1.46595 1.06396 1.07819 1.55003 1.19734 1.01443 0.78132 0.92662 1.19836 0.95417 1.15763 0.98177 1.24017 0.98715 0.92268 0.89906 1.78100 0.90323 1.26190 1.18669 1.46368 1.12447 1.36291 1.09113 1.21523 0.89620 0.99231 0.90109 1.20782 0.95561 1.03024 1.00402 1.21123 0.99936 0.97090 0.92213 1.20744 0.91342 1.01580 1.00768 1.19336 0.95425 0.97445 0.87812 0.90245 0.89098 0.90951 0.93994 0.89582 0.93931 0.94835 0.89742 0.94958 0.92954 0.87379 0.89182 0.77998 0.81616 0.83027 0.84278 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 9.05 36.01 0.33 -0.31 16 2 C 0.15 2.51 8.07 -154.02 -1.24 1.27 16 3 N -0.30 -6.15 12.18 32.99 0.40 -5.75 16 4 N -0.32 -7.23 9.86 30.32 0.30 -6.93 16 5 C 0.38 7.95 6.21 -318.87 -1.98 5.97 16 6 N -0.47 -10.04 4.77 -176.08 -0.84 -10.89 16 7 C 0.05 0.93 8.75 60.06 0.53 1.46 16 8 C 0.23 5.74 2.32 -68.87 -0.16 5.58 16 9 H 0.04 1.05 8.02 -51.93 -0.42 0.63 16 10 C -0.17 -4.57 8.20 37.16 0.30 -4.27 16 11 C -0.51 -13.25 7.95 -34.44 -0.27 -13.52 16 12 H 0.07 1.68 6.75 -52.49 -0.35 1.33 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 15 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 N -0.46 -7.97 2.79 -115.36 -0.32 -8.29 16 20 C 0.20 2.78 6.56 -5.19 -0.03 2.75 16 21 C -0.28 -4.34 5.77 -104.25 -0.60 -4.95 16 22 C 0.13 2.32 11.78 -17.59 -0.21 2.11 16 23 N -0.31 -5.78 12.66 30.46 0.39 -5.39 16 24 N -0.28 -4.28 3.90 -10.71 -0.04 -4.32 16 25 C 0.12 1.38 11.19 -16.63 -0.19 1.20 16 26 C -0.18 -1.48 9.98 -39.92 -0.40 -1.88 16 27 C -0.08 -0.67 10.07 -39.52 -0.40 -1.07 16 28 C -0.12 -1.31 9.69 -39.40 -0.38 -1.69 16 29 C 0.12 1.71 6.76 -84.27 -0.57 1.14 16 30 H 0.08 0.74 6.73 -51.93 -0.35 0.39 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.53 6.81 -51.93 -0.35 0.18 16 33 H 0.04 0.89 6.22 -51.93 -0.32 0.56 16 34 H 0.09 1.69 6.56 -51.93 -0.34 1.35 16 35 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.03 0.88 5.90 -51.93 -0.31 0.57 16 37 H 0.08 2.42 6.07 -51.93 -0.32 2.10 16 38 H 0.03 0.81 6.37 -51.93 -0.33 0.48 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.09 0.89 7.09 -51.93 -0.37 0.53 16 42 H 0.20 3.70 8.06 -52.48 -0.42 3.28 16 43 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 44 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.15 1.17 5.20 -52.49 -0.27 0.90 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -35.07 372.61 -10.09 -45.16 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -5.82 Total: 4.16 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -5.37 Total: -4.55 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: 0.51 Total: -66.31 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.07 -10.09 -45.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612529945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.554 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds