Wall clock time and date at job start Sat Apr 11 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30295 * 126.34805 * 2 1 4 4 N 1.28527 * 110.05309 * 180.31257 * 3 2 1 5 5 C 1.31219 * 109.86020 * 359.71443 * 4 3 2 6 6 N 1.38583 * 126.47018 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99865 * 305.34915 * 6 5 4 8 8 C 1.46898 * 110.99968 * 69.30621 * 6 5 4 9 9 H 1.09002 * 109.46971 * 54.99960 * 8 6 5 10 10 C 1.53000 * 109.47334 * 294.99703 * 8 6 5 11 11 C 1.50699 * 109.46800 * 174.99546 * 8 6 5 12 12 H 1.08002 * 120.00099 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99774 * 179.97438 * 11 8 6 14 14 N 1.31509 * 119.99898 * 0.02562 * 13 11 8 15 15 Si 1.86807 * 119.99888 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46684 * 120.00381 * 15 13 11 18 18 H 1.48500 * 109.46969 * 240.00210 * 15 13 11 19 19 N 1.36452 * 107.05109 * 0.02562 * 5 4 3 20 20 C 1.46506 * 127.13243 * 179.97438 * 19 5 4 21 21 C 1.50700 * 109.46866 * 84.16211 * 20 19 5 22 22 C 1.38543 * 126.21249 * 264.95186 * 21 20 19 23 23 N 1.31482 * 109.00682 * 180.02562 * 22 21 20 24 24 N 1.40042 * 108.91395 * 0.02562 * 23 22 21 25 25 C 1.36543 * 132.43086 * 180.02562 * 24 23 22 26 26 C 1.34930 * 120.65697 * 179.97438 * 25 24 23 27 27 C 1.40471 * 120.43385 * 0.02562 * 26 25 24 28 28 C 1.36066 * 119.59082 * 359.97438 * 27 26 25 29 29 C 1.37127 * 107.44649 * 359.97438 * 24 23 22 30 30 H 1.08998 * 109.46692 * 270.15599 * 1 2 3 31 31 H 1.08999 * 109.46910 * 30.15455 * 1 2 3 32 32 H 1.09000 * 109.46980 * 150.15752 * 1 2 3 33 33 H 1.09003 * 109.47302 * 64.80491 * 7 6 5 34 34 H 1.08999 * 109.46711 * 184.80133 * 7 6 5 35 35 H 1.09004 * 109.47513 * 304.80325 * 7 6 5 36 36 H 1.09001 * 109.46634 * 59.99947 * 10 8 6 37 37 H 1.08995 * 109.47371 * 180.02562 * 10 8 6 38 38 H 1.09005 * 109.46820 * 300.00628 * 10 8 6 39 39 H 0.97007 * 119.99810 * 179.97438 * 14 13 11 40 40 H 1.09002 * 109.46999 * 324.16190 * 20 19 5 41 41 H 1.08995 * 109.46832 * 204.16145 * 20 19 5 42 42 H 1.08004 * 125.50033 * 0.06184 * 22 21 20 43 43 H 1.07998 * 119.66902 * 359.97438 * 25 24 23 44 44 H 1.08000 * 119.78484 * 180.28480 * 26 25 24 45 45 H 1.07998 * 120.20711 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.38780 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6888 -0.0066 5 6 3.5946 -0.6208 -0.0050 6 7 4.7581 -1.3737 -0.0111 7 6 5.6240 -0.9952 -1.1357 8 6 5.4713 -1.2507 1.2672 9 1 4.8015 -1.5191 2.0842 10 6 5.9459 0.1923 1.4498 11 6 6.6615 -2.1751 1.2692 12 1 6.8677 -2.7918 0.4069 13 6 7.4878 -2.2326 2.3714 14 7 7.2369 -1.4813 3.4212 15 14 8.9636 -3.3779 2.3736 16 1 9.0247 -4.1089 1.0825 17 1 10.2059 -2.5840 2.5518 18 1 8.8336 -4.3506 3.4881 19 7 2.3174 -1.1013 0.0025 20 6 1.9010 -2.5059 0.0064 21 6 1.9045 -3.0270 1.4204 22 6 2.9381 -3.7130 2.0373 23 7 2.5819 -4.0075 3.2682 24 7 1.2898 -3.5181 3.4963 25 6 0.4699 -3.5551 4.5876 26 6 -0.7569 -2.9950 4.5458 27 6 -1.2115 -2.3639 3.3760 28 6 -0.4059 -2.3190 2.2803 29 6 0.8717 -2.9075 2.3419 30 1 -0.3632 0.0028 1.0277 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5114 33 1 5.9592 0.0338 -1.0060 34 1 6.4890 -1.6578 -1.1671 35 1 5.0666 -1.0809 -2.0685 36 1 5.0849 0.8608 1.4483 37 1 6.4754 0.2834 2.3981 38 1 6.6156 0.4606 0.6327 39 1 7.8181 -1.5220 4.1969 40 1 2.5931 -3.0917 -0.5985 41 1 0.8965 -2.5881 -0.4086 42 1 3.8841 -3.9647 1.5810 43 1 0.8068 -4.0375 5.4932 44 1 -1.3920 -3.0284 5.4187 45 1 -2.1939 -1.9164 3.3467 46 1 -0.7425 -1.8375 1.3741 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001612529945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:48 Heat of formation + Delta-G solvation = 189.426662 kcal Electronic energy + Delta-G solvation = -30835.258442 eV Core-core repulsion = 26956.571667 eV Total energy + Delta-G solvation = -3878.686775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.85633 -42.94017 -38.95198 -38.24610 -36.35492 -34.87887 -33.71492 -32.71693 -31.65614 -30.87466 -30.28197 -28.39036 -27.26415 -27.08194 -26.64180 -24.67481 -23.66975 -23.15732 -22.22060 -21.51856 -20.85667 -18.40153 -18.26318 -17.86727 -17.60122 -17.44875 -16.79646 -16.71790 -16.52537 -16.38177 -15.81373 -15.49401 -15.12415 -14.87814 -14.75211 -14.36040 -14.11301 -13.74371 -13.49196 -13.37925 -13.26924 -13.08763 -12.99828 -12.82753 -12.74452 -12.71544 -12.61696 -12.52266 -12.31984 -12.10080 -12.00900 -11.68137 -11.41812 -11.38803 -11.03161 -10.84787 -10.53663 -10.32082 -9.82422 -9.38365 -8.59295 -8.13670 -6.26577 -0.15651 0.13683 0.87994 1.34791 1.36983 1.41640 1.43098 1.54879 1.88749 1.95066 2.41120 2.48738 3.16108 3.21006 3.28084 3.61560 3.65035 3.72369 3.90802 4.04667 4.13863 4.20921 4.26118 4.30629 4.47540 4.54313 4.61542 4.66143 4.69545 4.73442 4.77608 4.81427 4.98527 5.02039 5.06711 5.10532 5.12530 5.14293 5.22729 5.30920 5.47223 5.51592 5.54427 5.63099 5.69588 5.94763 5.95661 6.08942 6.22855 6.55077 6.72237 6.84540 7.42818 7.89404 8.93387 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.010473 B = 0.005019 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.985345 B = 5577.343940 C = 7404.092410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.177 3.823 3 N -0.344 5.344 4 N -0.355 5.355 5 C 0.353 3.647 6 N -0.460 5.460 7 C 0.052 3.948 8 C 0.248 3.752 9 H -0.007 1.007 10 C -0.157 4.157 11 C -0.509 4.509 12 H 0.073 0.927 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.963 3.037 16 H -0.256 1.256 17 H -0.283 1.283 18 H -0.287 1.287 19 N -0.459 5.459 20 C 0.203 3.797 21 C -0.300 4.300 22 C 0.104 3.896 23 N -0.368 5.368 24 N -0.284 5.284 25 C 0.075 3.925 26 C -0.145 4.145 27 C -0.061 4.061 28 C -0.138 4.138 29 C 0.116 3.884 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.056 0.944 38 H 0.033 0.967 39 H 0.259 0.741 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.197 0.803 45 H 0.190 0.810 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.692 -5.169 -3.490 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 N -0.185 5.185 4 N -0.198 5.198 5 C -0.004 4.004 6 N -0.185 5.185 7 C -0.096 4.096 8 C 0.142 3.858 9 H 0.011 0.989 10 C -0.216 4.216 11 C -0.548 4.548 12 H 0.092 0.908 13 C -0.185 4.185 14 N -0.562 5.562 15 Si 0.788 3.212 16 H -0.180 1.180 17 H -0.210 1.210 18 H -0.213 1.213 19 N -0.152 5.152 20 C 0.081 3.919 21 C -0.312 4.312 22 C -0.072 4.072 23 N -0.192 5.192 24 N -0.050 5.050 25 C -0.049 4.049 26 C -0.167 4.167 27 C -0.084 4.084 28 C -0.157 4.157 29 C -0.005 4.005 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.123 0.877 41 H 0.156 0.844 42 H 0.195 0.805 43 H 0.193 0.807 44 H 0.214 0.786 45 H 0.207 0.793 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -22.812 -4.850 -2.315 23.436 hybrid contribution 1.586 -0.572 0.136 1.692 sum -21.226 -5.423 -2.180 22.016 Atomic orbital electron populations 1.20627 0.80043 1.06522 1.05164 1.25720 0.98382 0.81818 1.03227 1.73823 0.96889 1.26445 1.21328 1.74566 1.12807 1.10250 1.22226 1.22810 0.87204 0.88241 1.02188 1.59262 1.02620 1.49853 1.06808 1.22206 0.96827 0.99668 0.90880 1.18861 0.91476 0.92434 0.83059 0.98900 1.22253 0.99279 0.98759 1.01339 1.21287 1.09109 1.22627 1.01728 0.90844 1.25729 1.00624 0.97187 0.94989 1.70087 1.39518 1.40793 1.05811 0.85426 0.78775 0.78509 0.78462 1.17975 1.20951 1.21311 1.46829 1.05033 1.09400 1.53910 1.20055 1.03809 0.76002 0.92011 1.19916 0.95309 1.16673 0.99346 1.23771 0.98855 0.94036 0.90556 1.77910 0.92997 1.28933 1.19334 1.46527 1.11735 1.36132 1.10572 1.22204 0.90887 1.01783 0.90057 1.21472 0.93971 0.99253 1.01956 1.21804 1.01243 0.94675 0.90698 1.21200 0.89692 1.01765 1.03073 1.19867 0.96670 0.97045 0.86938 0.88364 0.87524 0.86962 0.95790 0.89594 0.91308 0.95632 0.92568 0.94777 0.93190 0.87717 0.84360 0.80459 0.80685 0.78630 0.79281 0.80747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.00 9.05 71.24 0.64 -0.36 16 2 C 0.18 5.48 8.07 137.64 1.11 6.59 16 3 N -0.34 -14.17 12.18 -49.53 -0.60 -14.77 16 4 N -0.36 -16.65 9.86 -58.00 -0.57 -17.22 16 5 C 0.35 15.20 6.21 260.11 1.61 16.82 16 6 N -0.46 -20.58 4.77 -711.00 -3.39 -23.97 16 7 C 0.05 2.10 8.75 127.69 1.12 3.22 16 8 C 0.25 13.24 2.32 44.17 0.10 13.34 16 9 H -0.01 -0.43 8.02 -2.39 -0.02 -0.45 16 10 C -0.16 -8.74 8.20 71.98 0.59 -8.15 16 11 C -0.51 -27.74 7.95 25.60 0.20 -27.54 16 12 H 0.07 3.82 6.75 -2.91 -0.02 3.80 16 13 C 0.01 0.76 5.30 84.66 0.45 1.21 16 14 N -0.92 -55.63 11.32 21.45 0.24 -55.39 16 15 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 N -0.46 -15.40 2.79 -518.89 -1.45 -16.84 16 20 C 0.20 5.28 6.56 85.63 0.56 5.84 16 21 C -0.30 -9.44 5.77 -19.63 -0.11 -9.56 16 22 C 0.10 4.07 11.78 84.82 1.00 5.07 16 23 N -0.37 -14.78 12.66 -57.54 -0.73 -15.51 16 24 N -0.28 -8.88 3.90 -187.79 -0.73 -9.61 16 25 C 0.08 1.61 11.19 83.20 0.93 2.55 16 26 C -0.15 -1.75 9.98 22.05 0.22 -1.53 16 27 C -0.06 -0.63 10.07 22.31 0.22 -0.41 16 28 C -0.14 -2.24 9.69 22.39 0.22 -2.03 16 29 C 0.12 3.16 6.76 39.11 0.26 3.43 16 30 H 0.10 1.25 6.73 -2.39 -0.02 1.23 16 31 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 0.88 6.81 -2.39 -0.02 0.86 16 33 H 0.02 1.04 6.22 -2.39 -0.01 1.03 16 34 H 0.09 3.44 6.56 -2.39 -0.02 3.42 16 35 H 0.07 2.41 8.11 -2.39 -0.02 2.39 16 36 H 0.02 1.42 5.90 -2.39 -0.01 1.41 16 37 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 38 H 0.03 1.81 6.37 -2.38 -0.02 1.80 16 39 H 0.26 14.94 8.31 -92.70 -0.77 14.16 16 40 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.14 2.17 7.09 -2.39 -0.02 2.15 16 42 H 0.18 7.41 8.06 -2.91 -0.02 7.39 16 43 H 0.18 3.14 8.06 -2.91 -0.02 3.11 16 44 H 0.20 0.65 8.06 -2.91 -0.02 0.62 16 45 H 0.19 0.20 8.06 -2.91 -0.02 0.17 16 46 H 0.18 1.67 5.20 -2.91 -0.02 1.66 16 Total: -1.00 -86.21 372.61 4.95 -81.26 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.02 Total: 17.24 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 9.14 Total: 8.48 kcal Atomic # 7 Polarization: -146.08 SS G_CDS: -7.24 Total: -153.31 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -86.21 4.95 -81.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001612529945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.689 kcal (2) G-P(sol) polarization free energy of solvation -86.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 189.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds