Wall clock time and date at job start Sat Apr 11 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48508 * 109.46692 * 275.13651 * 3 2 1 5 5 H 1.48504 * 109.47089 * 35.13465 * 3 2 1 6 6 H 1.48496 * 109.47448 * 155.13877 * 3 2 1 7 7 C 1.38807 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00148 * 336.83250 * 7 2 1 9 9 N 1.36939 * 120.00382 * 156.84059 * 7 2 1 10 10 C 1.46504 * 119.99520 * 325.01789 * 9 7 2 11 11 C 1.53003 * 109.46726 * 264.34342 * 10 9 7 12 12 O 1.42893 * 109.47370 * 63.57246 * 11 10 9 13 13 C 1.46499 * 120.00328 * 145.01147 * 9 7 2 14 14 H 1.09004 * 109.49595 * 179.97438 * 13 9 7 15 15 C 1.53039 * 109.49376 * 59.93922 * 13 9 7 16 16 C 1.53041 * 109.53534 * 178.71678 * 15 13 9 17 17 C 1.53187 * 109.34230 * 61.31300 * 16 15 13 18 18 N 1.46924 * 108.77588 * 305.38016 * 17 16 15 19 19 C 1.34781 * 120.63212 * 233.58670 * 18 17 16 20 20 O 1.21273 * 120.00112 * 180.02562 * 19 18 17 21 21 C 1.50695 * 119.99745 * 0.02562 * 19 18 17 22 22 C 1.53002 * 109.47134 * 179.97438 * 21 19 18 23 23 H 1.08993 * 110.76851 * 308.52930 * 22 21 19 24 24 C 1.54573 * 110.86700 * 72.27562 * 22 21 19 25 25 O 1.45830 * 104.44649 * 145.01296 * 24 22 21 26 26 C 1.34072 * 109.90708 * 329.39981 * 25 24 22 27 27 O 1.20822 * 125.09530 * 200.83743 * 26 25 24 28 28 C 1.51327 * 109.80867 * 20.82582 * 26 25 24 29 29 C 1.46925 * 118.73551 * 53.61041 * 18 17 16 30 30 H 0.97002 * 120.00049 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47143 * 144.34053 * 10 9 7 32 32 H 1.09001 * 109.46945 * 24.33618 * 10 9 7 33 33 H 1.08999 * 109.46850 * 183.57943 * 11 10 9 34 34 H 1.09000 * 109.46764 * 303.57251 * 11 10 9 35 35 H 0.96700 * 114.00002 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.45971 * 298.70247 * 15 13 9 37 37 H 1.08999 * 109.46667 * 58.66322 * 15 13 9 38 38 H 1.09006 * 109.46875 * 301.36133 * 16 15 13 39 39 H 1.09001 * 109.49681 * 181.28716 * 16 15 13 40 40 H 1.09003 * 109.58449 * 185.59273 * 17 16 15 41 41 H 1.08998 * 109.70076 * 65.23847 * 17 16 15 42 42 H 1.08998 * 109.47306 * 299.99895 * 21 19 18 43 43 H 1.09001 * 109.47063 * 60.00035 * 21 19 18 44 44 H 1.09002 * 110.44192 * 263.76058 * 24 22 21 45 45 H 1.09006 * 110.43815 * 26.27395 * 24 22 21 46 46 H 1.09003 * 110.37098 * 238.84832 * 28 26 25 47 47 H 1.09005 * 110.46249 * 116.57216 * 28 26 25 48 48 H 1.09011 * 109.58284 * 186.60376 * 29 18 17 49 49 H 1.09001 * 109.70740 * 66.24875 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3891 2.1091 -1.3946 5 1 1.5061 2.6190 0.8058 6 1 3.5978 1.4114 0.5886 7 6 2.0103 -1.2021 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2969 -1.2501 -0.4658 10 6 3.7011 -0.4006 -1.5889 11 6 3.6014 -1.1965 -2.8919 12 8 2.2391 -1.5588 -3.1258 13 6 4.2692 -2.1508 0.1583 14 1 5.2316 -2.0517 -0.3439 15 6 3.7776 -3.5951 0.0386 16 6 4.8078 -4.5397 0.6620 17 6 4.9694 -4.2048 2.1480 18 7 5.3012 -2.7795 2.2782 19 6 6.3888 -2.3881 2.9715 20 8 6.6516 -1.2085 3.0721 21 6 7.2781 -3.4164 3.6217 22 6 8.4319 -2.7125 4.3387 23 1 8.9336 -2.0133 3.6697 24 6 7.9330 -1.9982 5.6154 25 8 9.0333 -2.1351 6.5626 26 6 9.7001 -3.2740 6.3261 27 8 10.4080 -3.8427 7.1231 28 6 9.4328 -3.7405 4.9116 29 6 4.4246 -1.7889 1.6387 30 1 -0.4850 0.8401 -0.0004 31 1 4.7293 -0.0700 -1.4428 32 1 3.0443 0.4676 -1.6425 33 1 3.9622 -0.5854 -3.7193 34 1 4.2090 -2.0981 -2.8142 35 1 2.1010 -2.0670 -3.9368 36 1 2.8268 -3.6996 0.5613 37 1 3.6431 -3.8470 -1.0133 38 1 5.7654 -4.4183 0.1554 39 1 4.4678 -5.5699 0.5560 40 1 5.7722 -4.8072 2.5731 41 1 4.0382 -4.4128 2.6749 42 1 6.6994 -3.9931 4.3432 43 1 7.6782 -4.0848 2.8593 44 1 7.7358 -0.9459 5.4105 45 1 7.0372 -2.4864 5.9994 46 1 8.9913 -4.7371 4.9177 47 1 10.3542 -3.7382 4.3291 48 1 4.8681 -0.7970 1.7278 49 1 3.4474 -1.7969 2.1214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656772161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:58 Heat of formation + Delta-G solvation = -135.433762 kcal Electronic energy + Delta-G solvation = -31133.021588 eV Core-core repulsion = 26868.353386 eV Total energy + Delta-G solvation = -4264.668202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33990 -40.04896 -38.02303 -37.56592 -36.41503 -34.82835 -34.54854 -32.36513 -31.52210 -30.41967 -29.18628 -27.81074 -27.29263 -24.96446 -24.08029 -22.66203 -21.83756 -21.58023 -21.08600 -19.85149 -18.81984 -17.71803 -17.01893 -16.91602 -16.75216 -16.53575 -16.49112 -15.70707 -15.50586 -15.30331 -14.60978 -14.28167 -14.16443 -14.06720 -13.90845 -13.71902 -13.57990 -13.25905 -13.06016 -12.81155 -12.65714 -12.49903 -12.31376 -12.24737 -11.88031 -11.72271 -11.56243 -11.50615 -11.15800 -10.88044 -10.85374 -10.67385 -10.56498 -10.50048 -10.40914 -10.10475 -9.72943 -9.71864 -9.60153 -9.19953 -8.47817 -8.42928 -6.89289 -5.92985 -3.31925 1.76199 2.62103 2.99980 3.02201 3.33185 3.50170 3.52956 3.61201 3.85341 4.15226 4.31615 4.55697 4.61192 4.67810 4.83392 4.91353 4.97658 5.01997 5.03983 5.08800 5.14697 5.23314 5.25553 5.39902 5.43866 5.54389 5.63679 5.67185 5.74985 5.82563 5.86116 5.94777 6.06325 6.07432 6.16398 6.29002 6.39447 6.46807 6.47760 6.61678 6.68592 6.84273 6.91516 7.15439 7.53421 8.03671 8.20690 8.36807 8.43418 8.97164 9.76211 10.10538 11.22763 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002811 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.260312 B = 9957.166762 C =10696.798790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.042 3.958 3 Si 0.869 3.131 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.253 4.253 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.131 3.869 11 C 0.062 3.938 12 O -0.535 6.535 13 C 0.171 3.829 14 H 0.051 0.949 15 C -0.126 4.126 16 C -0.132 4.132 17 C 0.106 3.894 18 N -0.604 5.604 19 C 0.507 3.493 20 O -0.545 6.545 21 C -0.133 4.133 22 C -0.106 4.106 23 H 0.110 0.890 24 C 0.061 3.939 25 O -0.348 6.348 26 C 0.483 3.517 27 O -0.463 6.463 28 C -0.185 4.185 29 C 0.100 3.900 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.030 0.970 35 H 0.353 0.647 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.085 0.915 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.846 -11.077 2.233 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.158 4.158 3 Si 0.699 3.301 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.005 3.995 11 C -0.018 4.018 12 O -0.337 6.337 13 C 0.062 3.938 14 H 0.069 0.931 15 C -0.165 4.165 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.337 5.337 19 C 0.295 3.705 20 O -0.423 6.423 21 C -0.173 4.173 22 C -0.125 4.125 23 H 0.128 0.872 24 C -0.013 4.013 25 O -0.264 6.264 26 C 0.324 3.676 27 O -0.347 6.347 28 C -0.223 4.223 29 C -0.023 4.023 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.197 0.803 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.141 0.859 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.103 0.897 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.077 -10.108 3.419 18.471 hybrid contribution 0.336 0.557 -0.928 1.133 sum 15.413 -9.551 2.491 18.303 Atomic orbital electron populations 1.69878 1.05915 1.26396 1.51545 1.25294 0.94908 0.97370 0.98271 0.87101 0.80809 0.85500 0.76667 1.21657 1.23089 1.19392 1.18514 0.86373 0.94155 1.39039 0.90365 1.44010 1.08290 1.46697 1.31966 1.21367 0.97810 0.94187 0.86139 1.22865 0.83662 0.97362 0.97934 1.86928 1.25498 1.76037 1.45200 1.20600 0.91849 0.90295 0.91022 0.93056 1.21952 0.98543 0.95227 1.00803 1.21933 1.00392 0.99931 0.94849 1.21777 1.01270 0.80988 0.97672 1.48293 1.25890 1.07854 1.51639 1.20438 0.81281 0.89704 0.79122 1.90704 1.72115 1.18341 1.61124 1.21753 0.95992 0.98360 1.01190 1.22286 0.95608 0.97180 0.97473 0.87178 1.24347 0.86716 1.04850 0.85355 1.87055 1.42946 1.39646 1.56745 1.23118 0.77343 0.78199 0.88955 1.90715 1.36227 1.54358 1.53408 1.22995 1.02712 1.01778 0.94815 1.22359 0.93769 0.91692 0.94483 0.92940 0.93228 0.91437 0.95841 0.95139 0.80332 0.91022 0.92072 0.92154 0.91138 0.90454 0.91013 0.88365 0.87816 0.85945 0.89660 0.86755 0.86562 0.89697 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.97 55.49 0.78 -26.25 16 2 C 0.04 1.18 5.27 -17.43 -0.09 1.09 16 3 Si 0.87 22.00 24.99 -169.99 -4.25 17.75 16 4 H -0.29 -7.21 6.64 56.52 0.38 -6.83 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.58 8.35 -15.06 -0.13 -6.70 16 8 H 0.08 2.21 7.00 -52.48 -0.37 1.84 16 9 N -0.59 -12.83 2.01 -165.52 -0.33 -13.16 16 10 C 0.13 2.73 4.66 -4.04 -0.02 2.71 16 11 C 0.06 1.11 7.39 37.16 0.27 1.39 16 12 O -0.54 -10.76 13.34 -35.23 -0.47 -11.23 16 13 C 0.17 3.00 2.78 -67.81 -0.19 2.81 16 14 H 0.05 0.86 7.87 -51.93 -0.41 0.46 16 15 C -0.13 -1.92 5.11 -26.69 -0.14 -2.05 16 16 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 17 C 0.11 1.02 6.34 -3.71 -0.02 1.00 16 18 N -0.60 -7.85 2.97 -172.77 -0.51 -8.36 16 19 C 0.51 6.19 7.54 -10.99 -0.08 6.11 16 20 O -0.54 -8.73 14.55 5.56 0.08 -8.65 16 21 C -0.13 -0.93 3.36 -27.88 -0.09 -1.02 16 22 C -0.11 -0.78 2.74 -89.01 -0.24 -1.03 16 23 H 0.11 0.91 7.87 -51.93 -0.41 0.50 16 24 C 0.06 0.54 6.78 37.98 0.26 0.80 16 25 O -0.35 -3.89 11.05 -38.50 -0.43 -4.32 16 26 C 0.48 5.13 8.58 36.31 0.31 5.44 16 27 O -0.46 -6.52 18.00 -18.41 -0.33 -6.85 16 28 C -0.18 -1.16 6.52 -26.79 -0.17 -1.34 16 29 C 0.10 1.75 5.77 -3.71 -0.02 1.73 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 31 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 32 H 0.07 1.61 3.27 -51.93 -0.17 1.44 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.35 5.09 9.12 45.56 0.42 5.50 16 36 H 0.07 1.25 7.03 -51.93 -0.37 0.88 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.47 5.93 -51.93 -0.31 0.17 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.50 7.73 -51.93 -0.40 0.10 16 43 H 0.10 0.51 7.69 -51.93 -0.40 0.11 16 44 H 0.12 1.20 7.82 -51.93 -0.41 0.79 16 45 H 0.09 0.65 7.77 -51.93 -0.40 0.25 16 46 H 0.11 0.50 7.80 -51.93 -0.40 0.09 16 47 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.08 1.71 7.01 -51.92 -0.36 1.34 16 49 H 0.08 1.61 7.50 -51.93 -0.39 1.22 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -35.57 383.77 -7.12 -42.69 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.92 Total: 3.22 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.52 Total: 9.38 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.07 Total: -47.77 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.15 Total: -31.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.25 Total: 17.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.57 -7.12 -42.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656772161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.745 kcal (2) G-P(sol) polarization free energy of solvation -35.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds