Wall clock time and date at job start Sat Apr 11 2020 06:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48508 * 109.46692 * 275.13651 * 3 2 1 5 5 H 1.48504 * 109.47089 * 35.13465 * 3 2 1 6 6 H 1.48496 * 109.47448 * 155.13877 * 3 2 1 7 7 C 1.38807 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00148 * 336.83250 * 7 2 1 9 9 N 1.36939 * 120.00382 * 156.84059 * 7 2 1 10 10 C 1.46504 * 119.99520 * 325.01789 * 9 7 2 11 11 C 1.53003 * 109.46726 * 264.34342 * 10 9 7 12 12 O 1.42893 * 109.47370 * 63.57246 * 11 10 9 13 13 C 1.46499 * 120.00328 * 145.01147 * 9 7 2 14 14 H 1.09004 * 109.49595 * 179.97438 * 13 9 7 15 15 C 1.53039 * 109.49376 * 59.93922 * 13 9 7 16 16 C 1.53041 * 109.53534 * 178.71678 * 15 13 9 17 17 C 1.53187 * 109.34230 * 61.31300 * 16 15 13 18 18 N 1.46924 * 108.77588 * 305.38016 * 17 16 15 19 19 C 1.34781 * 120.63212 * 233.58670 * 18 17 16 20 20 O 1.21273 * 120.00112 * 180.02562 * 19 18 17 21 21 C 1.50695 * 119.99745 * 0.02562 * 19 18 17 22 22 C 1.53002 * 109.47134 * 179.97438 * 21 19 18 23 23 H 1.08993 * 110.76851 * 308.52930 * 22 21 19 24 24 C 1.54573 * 110.86700 * 72.27562 * 22 21 19 25 25 O 1.45830 * 104.44649 * 145.01296 * 24 22 21 26 26 C 1.34072 * 109.90708 * 329.39981 * 25 24 22 27 27 O 1.20822 * 125.09530 * 200.83743 * 26 25 24 28 28 C 1.51327 * 109.80867 * 20.82582 * 26 25 24 29 29 C 1.46925 * 118.73551 * 53.61041 * 18 17 16 30 30 H 0.97002 * 120.00049 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47143 * 144.34053 * 10 9 7 32 32 H 1.09001 * 109.46945 * 24.33618 * 10 9 7 33 33 H 1.08999 * 109.46850 * 183.57943 * 11 10 9 34 34 H 1.09000 * 109.46764 * 303.57251 * 11 10 9 35 35 H 0.96700 * 114.00002 * 180.02562 * 12 11 10 36 36 H 1.08999 * 109.45971 * 298.70247 * 15 13 9 37 37 H 1.08999 * 109.46667 * 58.66322 * 15 13 9 38 38 H 1.09006 * 109.46875 * 301.36133 * 16 15 13 39 39 H 1.09001 * 109.49681 * 181.28716 * 16 15 13 40 40 H 1.09003 * 109.58449 * 185.59273 * 17 16 15 41 41 H 1.08998 * 109.70076 * 65.23847 * 17 16 15 42 42 H 1.08998 * 109.47306 * 299.99895 * 21 19 18 43 43 H 1.09001 * 109.47063 * 60.00035 * 21 19 18 44 44 H 1.09002 * 110.44192 * 263.76058 * 24 22 21 45 45 H 1.09006 * 110.43815 * 26.27395 * 24 22 21 46 46 H 1.09003 * 110.37098 * 238.84832 * 28 26 25 47 47 H 1.09005 * 110.46249 * 116.57216 * 28 26 25 48 48 H 1.09011 * 109.58284 * 186.60376 * 29 18 17 49 49 H 1.09001 * 109.70740 * 66.24875 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3891 2.1091 -1.3946 5 1 1.5061 2.6190 0.8058 6 1 3.5978 1.4114 0.5886 7 6 2.0103 -1.2021 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2969 -1.2501 -0.4658 10 6 3.7011 -0.4006 -1.5889 11 6 3.6014 -1.1965 -2.8919 12 8 2.2391 -1.5588 -3.1258 13 6 4.2692 -2.1508 0.1583 14 1 5.2316 -2.0517 -0.3439 15 6 3.7776 -3.5951 0.0386 16 6 4.8078 -4.5397 0.6620 17 6 4.9694 -4.2048 2.1480 18 7 5.3012 -2.7795 2.2782 19 6 6.3888 -2.3881 2.9715 20 8 6.6516 -1.2085 3.0721 21 6 7.2781 -3.4164 3.6217 22 6 8.4319 -2.7125 4.3387 23 1 8.9336 -2.0133 3.6697 24 6 7.9330 -1.9982 5.6154 25 8 9.0333 -2.1351 6.5626 26 6 9.7001 -3.2740 6.3261 27 8 10.4080 -3.8427 7.1231 28 6 9.4328 -3.7405 4.9116 29 6 4.4246 -1.7889 1.6387 30 1 -0.4850 0.8401 -0.0004 31 1 4.7293 -0.0700 -1.4428 32 1 3.0443 0.4676 -1.6425 33 1 3.9622 -0.5854 -3.7193 34 1 4.2090 -2.0981 -2.8142 35 1 2.1010 -2.0670 -3.9368 36 1 2.8268 -3.6996 0.5613 37 1 3.6431 -3.8470 -1.0133 38 1 5.7654 -4.4183 0.1554 39 1 4.4678 -5.5699 0.5560 40 1 5.7722 -4.8072 2.5731 41 1 4.0382 -4.4128 2.6749 42 1 6.6994 -3.9931 4.3432 43 1 7.6782 -4.0848 2.8593 44 1 7.7358 -0.9459 5.4105 45 1 7.0372 -2.4864 5.9994 46 1 8.9913 -4.7371 4.9177 47 1 10.3542 -3.7382 4.3291 48 1 4.8681 -0.7970 1.7278 49 1 3.4474 -1.7969 2.1214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656772161.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:57 Heat of formation + Delta-G solvation = -162.880926 kcal Electronic energy + Delta-G solvation = -31134.211786 eV Core-core repulsion = 26868.353386 eV Total energy + Delta-G solvation = -4265.858400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.10267 -41.07340 -39.25284 -38.56179 -37.74558 -36.32720 -35.26768 -33.89928 -33.09017 -31.66278 -30.01860 -29.20645 -28.22700 -26.06112 -25.74167 -23.97381 -22.66846 -22.38102 -22.28631 -21.24264 -19.80334 -18.58019 -18.41446 -18.23413 -17.76545 -17.74937 -17.30071 -17.24559 -16.62676 -16.47246 -15.96980 -15.49318 -15.16266 -15.14465 -15.01658 -14.90846 -14.58801 -14.50545 -14.32046 -14.04840 -13.95996 -13.77450 -13.40167 -13.32966 -13.11418 -12.91452 -12.85723 -12.47594 -12.25993 -12.19179 -12.09096 -11.91137 -11.73067 -11.67381 -11.52760 -11.48785 -11.31006 -11.29334 -10.73015 -10.66349 -10.48524 -9.58925 -8.72116 -8.09748 -5.41417 0.99862 1.27082 1.39780 1.47141 1.71956 2.03626 2.29057 2.46389 2.98465 3.08916 3.23313 3.35786 3.57011 3.68492 3.70848 3.94083 4.07805 4.11859 4.20711 4.27253 4.31488 4.40423 4.46481 4.49108 4.52924 4.56039 4.64123 4.64779 4.67754 4.75702 4.77872 4.86853 4.87688 4.96747 5.03605 5.05216 5.13008 5.13879 5.26331 5.46325 5.56832 5.63378 5.76169 6.01933 6.27284 6.38376 6.58821 7.03288 7.19843 7.26958 7.73293 8.11612 9.10769 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017482 B = 0.002811 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.260312 B = 9957.166762 C =10696.798790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.019 4.019 3 Si 0.925 3.075 4 H -0.283 1.283 5 H -0.317 1.317 6 H -0.264 1.264 7 C -0.211 4.211 8 H 0.048 0.952 9 N -0.601 5.601 10 C 0.117 3.883 11 C 0.068 3.932 12 O -0.575 6.575 13 C 0.169 3.831 14 H 0.069 0.931 15 C -0.118 4.118 16 C -0.122 4.122 17 C 0.101 3.899 18 N -0.606 5.606 19 C 0.502 3.498 20 O -0.591 6.591 21 C -0.121 4.121 22 C -0.099 4.099 23 H 0.100 0.900 24 C 0.056 3.944 25 O -0.373 6.373 26 C 0.478 3.522 27 O -0.508 6.508 28 C -0.163 4.163 29 C 0.113 3.887 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.377 0.623 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.067 0.933 42 H 0.130 0.870 43 H 0.145 0.855 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.149 0.851 47 H 0.137 0.863 48 H 0.052 0.948 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.014 -14.254 1.277 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.214 4.214 3 Si 0.757 3.243 4 H -0.211 1.211 5 H -0.247 1.247 6 H -0.189 1.189 7 C -0.341 4.341 8 H 0.065 0.935 9 N -0.323 5.323 10 C -0.008 4.008 11 C -0.012 4.012 12 O -0.380 6.380 13 C 0.062 3.938 14 H 0.087 0.913 15 C -0.158 4.158 16 C -0.161 4.161 17 C -0.020 4.020 18 N -0.339 5.339 19 C 0.292 3.708 20 O -0.472 6.472 21 C -0.160 4.160 22 C -0.118 4.118 23 H 0.118 0.882 24 C -0.018 4.018 25 O -0.290 6.290 26 C 0.322 3.678 27 O -0.395 6.395 28 C -0.201 4.201 29 C -0.012 4.012 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.224 0.776 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.167 0.833 47 H 0.155 0.845 48 H 0.071 0.929 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.300 -13.327 2.431 22.769 hybrid contribution -0.605 1.498 -0.625 1.732 sum 17.696 -11.829 1.805 21.361 Atomic orbital electron populations 1.69996 1.07377 1.26475 1.55705 1.25792 0.95346 1.00103 1.00136 0.86163 0.79465 0.82222 0.76488 1.21102 1.24676 1.18877 1.18352 0.87811 0.92432 1.35550 0.93480 1.44159 1.07648 1.47464 1.33077 1.21510 0.98246 0.93532 0.87506 1.22775 0.83111 0.98312 0.97016 1.86850 1.27096 1.76856 1.47190 1.20809 0.91526 0.90671 0.90764 0.91288 1.21812 0.98772 0.94746 1.00445 1.21897 0.99358 0.99780 0.95019 1.22098 1.03280 0.79174 0.97436 1.48324 1.25518 1.08454 1.51562 1.21458 0.81004 0.90252 0.78100 1.90700 1.73102 1.20900 1.62453 1.21840 0.94777 0.96982 1.02398 1.22211 0.96035 0.97259 0.96320 0.88189 1.24453 0.86701 1.04401 0.86202 1.87017 1.43666 1.40438 1.57915 1.23866 0.76099 0.77488 0.90391 1.90689 1.38065 1.55588 1.55178 1.22968 1.03414 1.02528 0.91166 1.21796 0.92834 0.91900 0.94667 0.93566 0.90802 0.94647 0.92861 0.92861 0.77591 0.94239 0.92885 0.90346 0.88437 0.85078 0.91454 0.85227 0.83721 0.87815 0.88267 0.83332 0.84470 0.92907 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.97 21.65 0.30 -59.95 16 2 C -0.02 -1.09 5.27 84.86 0.45 -0.64 16 3 Si 0.93 47.63 24.99 68.60 1.71 49.35 16 4 H -0.28 -14.12 6.64 99.48 0.66 -13.46 16 5 H -0.32 -16.86 7.11 99.48 0.71 -16.15 16 6 H -0.26 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.21 -11.43 8.35 84.03 0.70 -10.72 16 8 H 0.05 2.82 7.00 -2.91 -0.02 2.80 16 9 N -0.60 -26.27 2.01 -677.60 -1.36 -27.63 16 10 C 0.12 4.76 4.66 86.38 0.40 5.16 16 11 C 0.07 2.25 7.39 71.98 0.53 2.79 16 12 O -0.57 -22.59 13.34 -148.98 -1.99 -24.58 16 13 C 0.17 5.77 2.78 45.07 0.13 5.90 16 14 H 0.07 2.13 7.87 -2.38 -0.02 2.12 16 15 C -0.12 -3.41 5.11 30.62 0.16 -3.26 16 16 C -0.12 -1.99 6.08 30.67 0.19 -1.81 16 17 C 0.10 1.47 6.34 86.36 0.55 2.02 16 18 N -0.61 -14.15 2.97 -818.92 -2.43 -16.58 16 19 C 0.50 10.72 7.54 87.65 0.66 11.39 16 20 O -0.59 -18.42 14.55 -3.01 -0.04 -18.47 16 21 C -0.12 -0.99 3.36 29.85 0.10 -0.89 16 22 C -0.10 -1.08 2.74 -9.75 -0.03 -1.11 16 23 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 24 C 0.06 0.90 6.78 72.52 0.49 1.40 16 25 O -0.37 -8.08 11.05 -50.23 -0.56 -8.64 16 26 C 0.48 9.23 8.58 71.44 0.61 9.84 16 27 O -0.51 -13.83 18.00 21.65 0.39 -13.44 16 28 C -0.16 -1.28 6.52 30.55 0.20 -1.08 16 29 C 0.11 3.96 5.77 86.36 0.50 4.46 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.07 2.59 8.04 -2.39 -0.02 2.57 16 32 H 0.04 1.68 3.27 -2.39 -0.01 1.67 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.38 10.32 9.12 -74.06 -0.68 9.65 16 36 H 0.04 1.38 7.03 -2.39 -0.02 1.36 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.13 0.57 5.93 -2.39 -0.01 0.56 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.13 0.39 7.73 -2.39 -0.02 0.37 16 43 H 0.15 0.17 7.69 -2.39 -0.02 0.15 16 44 H 0.10 2.06 7.82 -2.39 -0.02 2.04 16 45 H 0.10 1.29 7.77 -2.38 -0.02 1.27 16 46 H 0.15 0.26 7.80 -2.39 -0.02 0.24 16 47 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 48 H 0.05 2.17 7.01 -2.38 -0.02 2.16 16 49 H 0.05 1.95 7.50 -2.39 -0.02 1.93 16 Total: -1.00 -86.88 383.77 1.91 -84.97 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.25 Total: 11.52 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 5.63 Total: 23.44 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.49 Total: -104.16 kcal Atomic # 8 Polarization: -62.92 SS G_CDS: -2.20 Total: -65.11 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.71 Total: 49.35 kcal Total: -86.88 1.91 -84.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656772161.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.913 kcal (2) G-P(sol) polarization free energy of solvation -86.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds