Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48493 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47077 * 300.00080 * 3 2 1 6 6 H 1.48504 * 109.46917 * 59.99552 * 3 2 1 7 7 C 1.38815 * 120.00176 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99802 * 157.65569 * 7 2 1 9 9 N 1.36932 * 120.00059 * 337.64969 * 7 2 1 10 10 C 1.46494 * 120.00097 * 326.15743 * 9 7 2 11 11 C 1.53000 * 109.47183 * 264.43388 * 10 9 7 12 12 O 1.42903 * 109.46413 * 65.00539 * 11 10 9 13 13 C 1.46503 * 119.99867 * 146.15426 * 9 7 2 14 14 H 1.08993 * 109.52665 * 179.97438 * 13 9 7 15 15 C 1.53045 * 109.49802 * 300.00738 * 13 9 7 16 16 C 1.53039 * 109.53689 * 181.31644 * 15 13 9 17 17 C 1.53188 * 109.31471 * 298.62912 * 16 15 13 18 18 N 1.46928 * 108.77233 * 54.63686 * 17 16 15 19 19 C 1.34781 * 120.63071 * 126.41728 * 18 17 16 20 20 O 1.21278 * 119.99950 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.99714 * 359.97163 * 19 18 17 22 22 C 1.53000 * 109.46770 * 180.02562 * 21 19 18 23 23 H 1.08999 * 110.77070 * 308.52387 * 22 21 19 24 24 C 1.54564 * 110.86903 * 72.27679 * 22 21 19 25 25 O 1.45838 * 104.44407 * 145.01066 * 24 22 21 26 26 C 1.34064 * 109.90474 * 329.39737 * 25 24 22 27 27 O 1.20821 * 125.09128 * 200.79544 * 26 25 24 28 28 C 1.51330 * 109.81433 * 20.83298 * 26 25 24 29 29 C 1.46932 * 118.73860 * 306.39022 * 18 17 16 30 30 H 0.96999 * 120.00657 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.47201 * 24.44320 * 10 9 7 32 32 H 1.09006 * 109.46808 * 144.44280 * 10 9 7 33 33 H 1.08997 * 109.46802 * 184.99761 * 11 10 9 34 34 H 1.08993 * 109.47192 * 305.00510 * 11 10 9 35 35 H 0.96703 * 113.99861 * 180.02562 * 12 11 10 36 36 H 1.08995 * 109.46329 * 61.29216 * 15 13 9 37 37 H 1.09010 * 109.44248 * 301.32544 * 15 13 9 38 38 H 1.09002 * 109.49910 * 58.58243 * 16 15 13 39 39 H 1.09001 * 109.49564 * 178.67950 * 16 15 13 40 40 H 1.08995 * 109.59108 * 174.42447 * 17 16 15 41 41 H 1.09001 * 109.58682 * 294.85488 * 17 16 15 42 42 H 1.08998 * 109.47425 * 300.00675 * 21 19 18 43 43 H 1.09005 * 109.46872 * 60.00437 * 21 19 18 44 44 H 1.09003 * 110.44747 * 263.75434 * 24 22 21 45 45 H 1.09003 * 110.43646 * 26.27420 * 24 22 21 46 46 H 1.08993 * 110.36796 * 238.85041 * 28 26 25 47 47 H 1.08995 * 110.36649 * 116.51939 * 28 26 25 48 48 H 1.08995 * 109.58656 * 293.81996 * 29 18 17 49 49 H 1.09000 * 109.70264 * 173.46668 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0294 -1.2374 -0.3550 9 7 1.4028 -2.3433 0.4520 10 6 0.4322 -2.2724 1.5470 11 6 1.1353 -2.5739 2.8720 12 8 2.0917 -1.5485 3.1477 13 6 1.7234 -3.6351 -0.1601 14 1 1.1475 -4.4220 0.3268 15 6 1.3743 -3.5953 -1.6497 16 6 1.6783 -4.9548 -2.2832 17 6 3.1741 -5.2550 -2.1451 18 7 3.5482 -5.1525 -0.7280 19 6 4.1810 -6.1691 -0.1094 20 8 4.4849 -6.0720 1.0606 21 6 4.5109 -7.4265 -0.8718 22 6 5.2216 -8.4138 0.0561 23 1 6.0621 -7.9352 0.5588 24 6 4.2329 -9.0169 1.0796 25 8 4.6924 -10.3886 1.2645 26 6 5.2609 -10.8356 0.1357 27 8 5.4118 -11.9992 -0.1525 28 6 5.6862 -9.6644 -0.7231 29 6 3.2198 -3.9203 0.0020 30 1 -0.4851 0.8400 -0.0004 31 1 -0.0008 -1.2729 1.5845 32 1 -0.3578 -3.0047 1.3802 33 1 0.3985 -2.6087 3.6745 34 1 1.6434 -3.5357 2.8031 35 1 2.5768 -1.6751 3.9746 36 1 1.9680 -2.8247 -2.1414 37 1 0.3148 -3.3682 -1.7681 38 1 1.1034 -5.7294 -1.7755 39 1 1.4075 -4.9330 -3.3388 40 1 3.3793 -6.2631 -2.5051 41 1 3.7470 -4.5332 -2.7274 42 1 3.5912 -7.8769 -1.2452 43 1 5.1625 -7.1823 -1.7109 44 1 4.2789 -8.4699 2.0213 45 1 3.2185 -9.0057 0.6810 46 1 5.1960 -9.7092 -1.6955 47 1 6.7695 -9.6558 -0.8434 48 1 3.7964 -3.0897 -0.4052 49 1 3.4556 -4.0453 1.0588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656772173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = -167.125433 kcal Electronic energy + Delta-G solvation = -31203.008249 eV Core-core repulsion = 26936.965793 eV Total energy + Delta-G solvation = -4266.042456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.09152 -41.04405 -39.11334 -38.52542 -37.69469 -36.25373 -35.25746 -33.77226 -32.86625 -31.39773 -29.97656 -29.03250 -28.16376 -25.97867 -25.91940 -23.64010 -22.73463 -22.28033 -22.14092 -21.24988 -19.81273 -18.52448 -18.30686 -18.21329 -17.74343 -17.72258 -17.24274 -16.89648 -16.47227 -16.26963 -16.07018 -15.58121 -15.31745 -15.06275 -14.91571 -14.68080 -14.53879 -14.46187 -14.26532 -13.91368 -13.76518 -13.58146 -13.28939 -13.08526 -12.91237 -12.84857 -12.67962 -12.49899 -12.32568 -12.20695 -12.15525 -11.92228 -11.69416 -11.58307 -11.55930 -11.48712 -11.29435 -11.22511 -10.75796 -10.63277 -10.40710 -9.57965 -8.49822 -7.75750 -5.28303 1.00871 1.44187 1.50252 1.57114 1.72943 2.06246 2.30265 2.57455 2.99486 3.23630 3.35846 3.55101 3.60372 3.70117 3.77981 3.95533 4.11860 4.17203 4.22631 4.30482 4.37449 4.47191 4.49330 4.52878 4.56575 4.66033 4.68818 4.69748 4.76092 4.84935 4.89393 4.90521 4.97652 5.02901 5.04684 5.14048 5.14499 5.28763 5.51364 5.59312 5.67888 5.74329 5.77231 5.83866 6.39344 6.52353 6.60099 7.14646 7.24828 7.27641 7.94945 8.43101 9.23126 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.002712 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.119415 B =10320.299648 C =10854.809061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.035 4.035 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.222 4.222 8 H 0.050 0.950 9 N -0.583 5.583 10 C 0.137 3.863 11 C 0.069 3.931 12 O -0.574 6.574 13 C 0.166 3.834 14 H 0.051 0.949 15 C -0.115 4.115 16 C -0.124 4.124 17 C 0.105 3.895 18 N -0.607 5.607 19 C 0.503 3.497 20 O -0.588 6.588 21 C -0.122 4.122 22 C -0.099 4.099 23 H 0.099 0.901 24 C 0.057 3.943 25 O -0.372 6.372 26 C 0.479 3.521 27 O -0.508 6.508 28 C -0.164 4.164 29 C 0.121 3.879 30 H 0.246 0.754 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.029 0.971 35 H 0.374 0.626 36 H 0.044 0.956 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.106 0.894 45 H 0.100 0.900 46 H 0.148 0.852 47 H 0.136 0.864 48 H 0.046 0.954 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.463 -16.679 -5.645 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.230 4.230 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.227 1.227 7 C -0.352 4.352 8 H 0.067 0.933 9 N -0.303 5.303 10 C 0.010 3.990 11 C -0.011 4.011 12 O -0.378 6.378 13 C 0.059 3.941 14 H 0.069 0.931 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.017 4.017 18 N -0.339 5.339 19 C 0.293 3.707 20 O -0.469 6.469 21 C -0.161 4.161 22 C -0.118 4.118 23 H 0.117 0.883 24 C -0.016 4.016 25 O -0.289 6.289 26 C 0.322 3.678 27 O -0.395 6.395 28 C -0.202 4.202 29 C -0.004 4.004 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.220 0.780 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.124 0.876 45 H 0.119 0.881 46 H 0.166 0.834 47 H 0.154 0.846 48 H 0.065 0.935 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.314 -16.899 -5.556 19.234 hybrid contribution 0.213 1.473 1.138 1.873 sum 7.527 -15.427 -4.418 17.724 Atomic orbital electron populations 1.70075 1.06420 1.25263 1.54879 1.25452 0.95449 1.00598 1.01544 0.85570 0.78959 0.81726 0.76239 1.19919 1.22096 1.22670 1.18867 0.93574 0.86625 1.36144 0.93270 1.43860 1.48601 1.02223 1.35626 1.21011 0.90582 1.02278 0.85083 1.22876 0.90740 0.89208 0.98296 1.86747 1.56175 1.49721 1.45206 1.20736 0.92913 0.87273 0.93202 0.93119 1.21792 0.99915 0.97489 0.96304 1.21916 0.96302 0.96003 1.02076 1.22064 0.95217 1.04802 0.79576 1.48322 1.57279 1.15648 1.12649 1.21404 0.76602 0.85432 0.87250 1.90688 1.55179 1.82332 1.18705 1.21842 1.04612 0.90636 0.99058 1.22201 0.99147 0.94875 0.95597 0.88269 1.24452 0.98731 0.75752 1.02681 1.87017 1.71187 1.33377 1.37348 1.23835 0.73350 0.90257 0.80337 1.90690 1.54795 1.21829 1.72214 1.22971 1.06675 0.89577 1.00967 1.21720 0.97161 0.85259 0.96231 0.94481 0.90894 0.93914 0.93673 0.95257 0.77976 0.93696 0.94618 0.91128 0.88755 0.85177 0.90972 0.85069 0.84182 0.87612 0.88142 0.83434 0.84636 0.93536 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.00 11.34 21.65 0.25 -52.75 16 2 C -0.03 -1.90 4.91 84.86 0.42 -1.48 16 3 Si 0.94 45.76 29.61 68.60 2.03 47.79 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 7 C -0.22 -11.63 8.06 84.03 0.68 -10.96 16 8 H 0.05 2.63 6.73 -2.91 -0.02 2.61 16 9 N -0.58 -27.24 2.35 -677.61 -1.59 -28.83 16 10 C 0.14 6.31 5.57 86.38 0.48 6.79 16 11 C 0.07 2.68 7.39 71.98 0.53 3.21 16 12 O -0.57 -24.04 13.40 -148.98 -2.00 -26.03 16 13 C 0.17 6.22 2.78 45.07 0.13 6.35 16 14 H 0.05 1.86 7.87 -2.39 -0.02 1.84 16 15 C -0.12 -3.86 5.11 30.62 0.16 -3.71 16 16 C -0.12 -2.48 6.08 30.67 0.19 -2.29 16 17 C 0.10 1.64 6.34 86.36 0.55 2.19 16 18 N -0.61 -14.34 2.97 -818.90 -2.43 -16.77 16 19 C 0.50 10.68 7.54 87.66 0.66 11.34 16 20 O -0.59 -17.78 14.55 -3.02 -0.04 -17.83 16 21 C -0.12 -1.03 3.36 29.85 0.10 -0.93 16 22 C -0.10 -1.08 2.74 -9.75 -0.03 -1.10 16 23 H 0.10 1.35 7.87 -2.39 -0.02 1.33 16 24 C 0.06 0.88 6.78 72.51 0.49 1.37 16 25 O -0.37 -7.83 11.05 -50.16 -0.55 -8.38 16 26 C 0.48 9.14 8.58 71.44 0.61 9.76 16 27 O -0.51 -13.75 18.00 21.65 0.39 -13.36 16 28 C -0.16 -1.33 6.52 30.56 0.20 -1.13 16 29 C 0.12 4.21 5.76 86.36 0.50 4.71 16 30 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.07 3.98 5.34 -2.39 -0.01 3.96 16 32 H 0.04 1.84 8.04 -2.38 -0.02 1.82 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.37 11.40 9.12 -74.06 -0.68 10.72 16 36 H 0.04 1.70 7.70 -2.39 -0.02 1.68 16 37 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.13 0.73 5.93 -2.39 -0.01 0.72 16 41 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.13 0.39 7.48 -2.39 -0.02 0.38 16 43 H 0.14 0.33 7.94 -2.38 -0.02 0.31 16 44 H 0.11 1.97 7.83 -2.39 -0.02 1.95 16 45 H 0.10 1.21 7.77 -2.39 -0.02 1.19 16 46 H 0.15 0.32 7.80 -2.39 -0.02 0.30 16 47 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.05 1.82 6.78 -2.39 -0.02 1.81 16 49 H 0.06 2.29 7.01 -2.39 -0.02 2.28 16 Total: -1.00 -79.21 388.64 1.99 -77.21 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.29 Total: 14.84 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: 5.66 Total: 24.12 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -3.78 Total: -98.36 kcal Atomic # 8 Polarization: -63.40 SS G_CDS: -2.20 Total: -65.60 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -79.21 1.99 -77.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656772173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.913 kcal (2) G-P(sol) polarization free energy of solvation -79.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds