Wall clock time and date at job start Sat Apr 11 2020 06:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00535 * 2 1 4 4 H 1.07996 * 120.00348 * 203.31153 * 3 2 1 5 5 C 1.38821 * 119.99767 * 23.31976 * 3 2 1 6 6 N 1.31616 * 120.00087 * 14.41874 * 5 3 2 7 7 Si 1.86802 * 119.99808 * 194.42341 * 5 3 2 8 8 H 1.48493 * 109.47257 * 59.99787 * 7 5 3 9 9 H 1.48504 * 109.46804 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47060 * 299.99596 * 7 5 3 11 11 C 1.46503 * 119.99408 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.47243 * 90.00411 * 11 2 1 13 13 H 1.09001 * 110.88328 * 57.42016 * 12 11 2 14 14 C 1.55151 * 111.03928 * 181.33048 * 12 11 2 15 15 C 1.54322 * 102.94313 * 153.58833 * 14 12 11 16 16 N 1.47293 * 107.30306 * 337.81546 * 15 14 12 17 17 C 1.34773 * 125.78673 * 178.92565 * 16 15 14 18 18 O 1.21495 * 119.99530 * 179.97438 * 17 16 15 19 19 C 1.48381 * 120.00633 * 359.97438 * 17 16 15 20 20 C 1.40208 * 119.22424 * 180.02562 * 19 17 16 21 21 C 1.36634 * 119.91256 * 179.97438 * 20 19 17 22 22 C 1.40564 * 118.10870 * 359.97438 * 21 20 19 23 23 C 1.40394 * 122.06945 * 180.02562 * 22 21 20 24 24 N 1.31244 * 119.87794 * 179.97438 * 23 22 21 25 25 C 1.32607 * 122.68325 * 0.03989 * 24 23 22 26 26 C 1.36099 * 121.98875 * 359.96048 * 25 24 23 27 27 C 1.40946 * 118.77304 * 0.02562 * 26 25 24 28 28 N 1.31984 * 119.21548 * 359.72633 * 19 17 16 29 29 C 1.47415 * 108.56115 * 358.92616 * 16 15 14 30 30 H 1.08995 * 109.47000 * 275.18590 * 1 2 3 31 31 H 1.08999 * 109.46774 * 35.18324 * 1 2 3 32 32 H 1.08994 * 109.47494 * 155.18248 * 1 2 3 33 33 H 0.96992 * 120.00519 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.47270 * 329.99960 * 11 2 1 35 35 H 1.09002 * 109.46816 * 209.99911 * 11 2 1 36 36 H 1.09003 * 110.71867 * 271.95504 * 14 12 11 37 37 H 1.08997 * 110.72188 * 35.04683 * 14 12 11 38 38 H 1.08998 * 109.88095 * 97.22191 * 15 14 12 39 39 H 1.08998 * 109.88089 * 218.23364 * 15 14 12 40 40 H 1.08001 * 120.04103 * 359.95473 * 20 19 17 41 41 H 1.07995 * 120.95161 * 180.02562 * 21 20 19 42 42 H 1.08005 * 120.06141 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.00246 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.61805 * 179.97438 * 26 25 24 45 45 H 1.09007 * 110.36843 * 265.26021 * 29 16 15 46 46 H 1.09002 * 110.37083 * 143.05212 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1636 1.2239 -0.3701 5 6 1.5408 2.3389 0.4759 6 7 0.4324 2.2550 1.1807 7 14 2.2944 4.0098 0.1160 8 1 2.3584 4.2180 -1.3529 9 1 1.4584 5.0725 0.7301 10 1 3.6652 4.0674 0.6843 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4433 13 1 3.0020 -0.9450 -1.9921 14 6 3.1985 -3.0696 -1.4865 15 6 2.7696 -3.6561 -2.8479 16 7 1.5067 -3.0008 -3.2290 17 6 0.8153 -3.2221 -4.3645 18 8 -0.2196 -2.6205 -4.5725 19 6 1.3178 -4.2004 -5.3605 20 6 0.5857 -4.4174 -6.5364 21 6 1.0357 -5.3147 -7.4634 22 6 2.2359 -5.9961 -7.1973 23 6 2.7743 -6.9348 -8.0918 24 7 3.8986 -7.5459 -7.8000 25 6 4.5672 -7.3178 -6.6778 26 6 4.1298 -6.4273 -5.7462 27 6 2.9289 -5.7294 -5.9860 28 7 2.4465 -4.8413 -5.1213 29 6 1.1245 -2.0609 -2.1596 30 1 -0.3633 0.0929 1.0234 31 1 -0.3633 0.8399 -0.5921 32 1 -0.3634 -0.9327 -0.4313 33 1 0.0066 3.0606 1.5129 34 1 1.6083 -2.0286 0.5129 35 1 3.1498 -1.1388 0.5133 36 1 4.2775 -2.9186 -1.4543 37 1 2.8759 -3.7126 -0.6676 38 1 3.5340 -3.4509 -3.5973 39 1 2.6189 -4.7318 -2.7572 40 1 -0.3329 -3.8763 -6.7091 41 1 0.4854 -5.4946 -8.3751 42 1 2.2643 -7.1536 -9.0183 43 1 5.4868 -7.8548 -6.4979 44 1 4.6919 -6.2591 -4.8394 45 1 0.4331 -2.5377 -1.4646 46 1 0.6746 -1.1641 -2.5855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664841211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:12 Heat of formation + Delta-G solvation = 70.706759 kcal Electronic energy + Delta-G solvation = -28822.055101 eV Core-core repulsion = 24905.927493 eV Total energy + Delta-G solvation = -3916.127607 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.69941 -40.00385 -38.33985 -37.44878 -35.35836 -34.16049 -32.55817 -31.81375 -30.89374 -30.57514 -28.69306 -26.88625 -25.92281 -25.15868 -24.48109 -23.32290 -22.79774 -21.13137 -20.34659 -19.75142 -18.90719 -17.83155 -17.63354 -16.59212 -16.40290 -16.09931 -15.71840 -15.26403 -15.11084 -14.81893 -14.71220 -14.46885 -13.91537 -13.64219 -13.49740 -13.46544 -13.15352 -12.97548 -12.91493 -12.62407 -12.39840 -12.24993 -11.77432 -11.42476 -11.18573 -10.94995 -10.91535 -10.71472 -10.57416 -10.37224 -10.30177 -10.19310 -10.03680 -9.87324 -9.81920 -9.73010 -9.66818 -8.98338 -8.52661 -8.48708 -6.70774 -5.69099 -3.16308 -0.38751 0.11837 1.37179 2.13981 2.84182 3.04408 3.40599 3.46505 3.47501 3.56164 3.67079 3.86494 4.02132 4.19545 4.22471 4.34510 4.51805 4.67406 4.83680 4.89177 5.00068 5.11896 5.17146 5.21685 5.27940 5.44642 5.45753 5.52606 5.57647 5.68291 5.80761 5.88614 5.97372 6.00606 6.11836 6.16134 6.18827 6.27844 6.39772 6.53703 6.71469 6.79942 6.89063 7.15833 7.40122 7.41603 7.53719 7.76069 7.83469 8.06067 8.43218 9.26536 9.90429 10.39459 11.35297 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.002334 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.044097 B =11993.475519 C =12414.869845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.601 5.601 3 C -0.256 4.256 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.163 3.837 12 C -0.117 4.117 13 H 0.082 0.918 14 C -0.134 4.134 15 C 0.119 3.881 16 N -0.592 5.592 17 C 0.571 3.429 18 O -0.529 6.529 19 C 0.149 3.851 20 C -0.129 4.129 21 C -0.039 4.039 22 C -0.156 4.156 23 C 0.159 3.841 24 N -0.485 5.485 25 C 0.087 3.913 26 C -0.133 4.133 27 C 0.150 3.850 28 N -0.441 5.441 29 C 0.118 3.882 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.001 0.999 33 H 0.253 0.747 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.150 0.850 45 H 0.069 0.931 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -21.021 -16.474 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.035 3.965 12 C -0.140 4.140 13 H 0.101 0.899 14 C -0.173 4.173 15 C -0.004 4.004 16 N -0.324 5.324 17 C 0.357 3.643 18 O -0.405 6.405 19 C -0.006 4.006 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.161 4.161 23 C -0.014 4.014 24 N -0.193 5.193 25 C -0.057 4.057 26 C -0.154 4.154 27 C 0.022 3.978 28 N -0.153 5.153 29 C -0.003 4.003 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.174 0.826 41 H 0.171 0.829 42 H 0.186 0.814 43 H 0.179 0.821 44 H 0.167 0.833 45 H 0.087 0.913 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.567 -21.071 -16.237 27.178 hybrid contribution -0.393 1.442 -0.355 1.536 sum 5.174 -19.629 -16.591 26.218 Atomic orbital electron populations 1.20846 0.82690 0.95552 0.99453 1.43882 1.01781 1.00628 1.86047 1.19098 0.98450 0.85678 1.35335 0.91578 1.25015 0.98064 0.98487 0.98018 1.70055 1.20561 1.27337 1.37083 0.86374 0.78360 0.84033 0.77989 1.21140 1.21677 1.20962 1.20658 0.96467 0.88556 0.90850 1.23225 0.94134 0.95448 1.01157 0.89945 1.22785 1.00897 0.97538 0.96058 1.22144 0.85176 0.96757 0.96338 1.48572 1.24231 1.41256 1.18333 1.17507 0.83857 0.82248 0.80705 1.90820 1.23319 1.49636 1.76771 1.21638 0.90655 0.94279 0.94006 1.21853 1.01734 0.98416 0.93002 1.21453 0.93347 0.92752 0.99098 1.19969 0.97892 1.00775 0.97430 1.23253 0.90996 0.89578 0.97587 1.67502 1.07590 1.24522 1.19647 1.22291 0.99152 0.95411 0.88814 1.21810 0.95005 0.96758 1.01798 1.18978 0.94969 0.93812 0.90029 1.68227 1.11335 1.05763 1.29993 1.22476 0.97987 0.92313 0.87553 0.95104 0.94304 0.98035 0.93723 0.94338 0.92819 0.90294 0.90781 0.90955 0.91172 0.82591 0.82901 0.81436 0.82131 0.83267 0.91308 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.61 59.85 0.52 4.43 16 2 N -0.60 -14.79 2.84 -181.12 -0.51 -15.30 16 3 C -0.26 -6.96 9.64 -15.06 -0.15 -7.11 16 4 H 0.07 1.75 7.87 -52.49 -0.41 1.34 16 5 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 6 N -0.91 -26.61 10.81 55.49 0.60 -26.01 16 7 Si 0.90 22.01 29.58 -169.99 -5.03 16.99 16 8 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 C 0.16 3.16 5.17 -4.04 -0.02 3.14 16 12 C -0.12 -1.94 3.29 -88.47 -0.29 -2.23 16 13 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 14 C -0.13 -1.67 6.42 -24.90 -0.16 -1.83 16 15 C 0.12 1.49 5.40 -2.92 -0.02 1.47 16 16 N -0.59 -9.14 3.33 -171.22 -0.57 -9.71 16 17 C 0.57 9.04 7.85 -12.09 -0.09 8.95 16 18 O -0.53 -9.85 16.53 5.37 0.09 -9.76 16 19 C 0.15 1.90 6.73 -82.89 -0.56 1.35 16 20 C -0.13 -1.30 9.54 -39.42 -0.38 -1.68 16 21 C -0.04 -0.28 9.92 -39.28 -0.39 -0.67 16 22 C -0.16 -1.34 5.75 -106.74 -0.61 -1.96 16 23 C 0.16 1.14 11.05 -16.99 -0.19 0.96 16 24 N -0.48 -4.16 10.30 -13.18 -0.14 -4.29 16 25 C 0.09 0.65 11.06 -17.99 -0.20 0.45 16 26 C -0.13 -1.10 10.08 -39.33 -0.40 -1.50 16 27 C 0.15 1.54 6.63 -84.86 -0.56 0.98 16 28 N -0.44 -5.23 6.81 -7.49 -0.05 -5.28 16 29 C 0.12 2.02 4.94 -2.53 -0.01 2.01 16 30 H 0.03 0.82 7.32 -51.93 -0.38 0.44 16 31 H 0.04 1.04 7.40 -51.93 -0.38 0.65 16 32 H 0.00 0.02 6.20 -51.93 -0.32 -0.30 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.04 0.70 8.03 -51.93 -0.42 0.28 16 35 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 38 H 0.07 0.89 7.40 -51.93 -0.38 0.51 16 39 H 0.07 0.82 7.55 -51.93 -0.39 0.43 16 40 H 0.16 1.46 7.60 -52.49 -0.40 1.07 16 41 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 42 H 0.17 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.07 1.19 7.20 -51.92 -0.37 0.81 16 46 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -33.52 376.20 -9.93 -43.45 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.39 Total: -2.49 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -3.60 Total: 6.75 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.67 Total: -60.60 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.52 -9.93 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664841211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.156 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds