Wall clock time and date at job start Sat Apr 11 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36929 * 120.00535 * 2 1 4 4 H 1.07996 * 120.00348 * 203.31153 * 3 2 1 5 5 C 1.38821 * 119.99767 * 23.31976 * 3 2 1 6 6 N 1.31616 * 120.00087 * 14.41874 * 5 3 2 7 7 Si 1.86802 * 119.99808 * 194.42341 * 5 3 2 8 8 H 1.48493 * 109.47257 * 59.99787 * 7 5 3 9 9 H 1.48504 * 109.46804 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.47060 * 299.99596 * 7 5 3 11 11 C 1.46503 * 119.99408 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.47243 * 90.00411 * 11 2 1 13 13 H 1.09001 * 110.88328 * 57.42016 * 12 11 2 14 14 C 1.55151 * 111.03928 * 181.33048 * 12 11 2 15 15 C 1.54322 * 102.94313 * 153.58833 * 14 12 11 16 16 N 1.47293 * 107.30306 * 337.81546 * 15 14 12 17 17 C 1.34773 * 125.78673 * 178.92565 * 16 15 14 18 18 O 1.21495 * 119.99530 * 179.97438 * 17 16 15 19 19 C 1.48381 * 120.00633 * 359.97438 * 17 16 15 20 20 C 1.40208 * 119.22424 * 180.02562 * 19 17 16 21 21 C 1.36634 * 119.91256 * 179.97438 * 20 19 17 22 22 C 1.40564 * 118.10870 * 359.97438 * 21 20 19 23 23 C 1.40394 * 122.06945 * 180.02562 * 22 21 20 24 24 N 1.31244 * 119.87794 * 179.97438 * 23 22 21 25 25 C 1.32607 * 122.68325 * 0.03989 * 24 23 22 26 26 C 1.36099 * 121.98875 * 359.96048 * 25 24 23 27 27 C 1.40946 * 118.77304 * 0.02562 * 26 25 24 28 28 N 1.31984 * 119.21548 * 359.72633 * 19 17 16 29 29 C 1.47415 * 108.56115 * 358.92616 * 16 15 14 30 30 H 1.08995 * 109.47000 * 275.18590 * 1 2 3 31 31 H 1.08999 * 109.46774 * 35.18324 * 1 2 3 32 32 H 1.08994 * 109.47494 * 155.18248 * 1 2 3 33 33 H 0.96992 * 120.00519 * 180.02562 * 6 5 3 34 34 H 1.08997 * 109.47270 * 329.99960 * 11 2 1 35 35 H 1.09002 * 109.46816 * 209.99911 * 11 2 1 36 36 H 1.09003 * 110.71867 * 271.95504 * 14 12 11 37 37 H 1.08997 * 110.72188 * 35.04683 * 14 12 11 38 38 H 1.08998 * 109.88095 * 97.22191 * 15 14 12 39 39 H 1.08998 * 109.88089 * 218.23364 * 15 14 12 40 40 H 1.08001 * 120.04103 * 359.95473 * 20 19 17 41 41 H 1.07995 * 120.95161 * 180.02562 * 21 20 19 42 42 H 1.08005 * 120.06141 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.00246 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.61805 * 179.97438 * 26 25 24 45 45 H 1.09007 * 110.36843 * 265.26021 * 29 16 15 46 46 H 1.09002 * 110.37083 * 143.05212 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1636 1.2239 -0.3701 5 6 1.5408 2.3389 0.4759 6 7 0.4324 2.2550 1.1807 7 14 2.2944 4.0098 0.1160 8 1 2.3584 4.2180 -1.3529 9 1 1.4584 5.0725 0.7301 10 1 3.6652 4.0674 0.6843 11 6 2.1974 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4433 13 1 3.0020 -0.9450 -1.9921 14 6 3.1985 -3.0696 -1.4865 15 6 2.7696 -3.6561 -2.8479 16 7 1.5067 -3.0008 -3.2290 17 6 0.8153 -3.2221 -4.3645 18 8 -0.2196 -2.6205 -4.5725 19 6 1.3178 -4.2004 -5.3605 20 6 0.5857 -4.4174 -6.5364 21 6 1.0357 -5.3147 -7.4634 22 6 2.2359 -5.9961 -7.1973 23 6 2.7743 -6.9348 -8.0918 24 7 3.8986 -7.5459 -7.8000 25 6 4.5672 -7.3178 -6.6778 26 6 4.1298 -6.4273 -5.7462 27 6 2.9289 -5.7294 -5.9860 28 7 2.4465 -4.8413 -5.1213 29 6 1.1245 -2.0609 -2.1596 30 1 -0.3633 0.0929 1.0234 31 1 -0.3633 0.8399 -0.5921 32 1 -0.3634 -0.9327 -0.4313 33 1 0.0066 3.0606 1.5129 34 1 1.6083 -2.0286 0.5129 35 1 3.1498 -1.1388 0.5133 36 1 4.2775 -2.9186 -1.4543 37 1 2.8759 -3.7126 -0.6676 38 1 3.5340 -3.4509 -3.5973 39 1 2.6189 -4.7318 -2.7572 40 1 -0.3329 -3.8763 -6.7091 41 1 0.4854 -5.4946 -8.3751 42 1 2.2643 -7.1536 -9.0183 43 1 5.4868 -7.8548 -6.4979 44 1 4.6919 -6.2591 -4.8394 45 1 0.4331 -2.5377 -1.4646 46 1 0.6746 -1.1641 -2.5855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664841211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:11 Heat of formation + Delta-G solvation = 49.939197 kcal Electronic energy + Delta-G solvation = -28822.955650 eV Core-core repulsion = 24905.927493 eV Total energy + Delta-G solvation = -3917.028156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.42124 -41.10160 -39.30301 -38.59231 -37.13267 -34.86961 -33.98411 -32.89907 -32.13383 -31.48016 -30.02646 -28.37172 -27.64209 -26.42320 -25.25912 -24.34082 -23.64253 -22.78704 -21.43838 -21.14292 -19.60493 -18.86384 -18.62022 -18.31161 -17.41284 -17.18591 -16.82946 -16.70295 -16.10864 -15.78008 -15.59420 -15.45317 -15.37209 -14.98114 -14.66080 -14.53183 -14.33753 -14.11907 -13.99315 -13.75839 -13.63951 -13.41830 -13.27194 -12.94004 -12.81179 -12.56078 -12.44201 -12.20386 -12.01642 -11.84072 -11.79971 -11.65229 -11.54300 -11.42757 -10.89106 -10.60945 -10.48969 -10.47504 -9.75720 -9.57271 -8.75233 -7.81169 -5.30237 -1.08997 -0.55301 0.73421 1.26519 1.44710 1.48219 1.53928 1.72198 2.15104 2.51055 2.70347 2.97382 3.30757 3.34945 3.38102 3.45929 3.59192 3.60712 3.73269 3.75663 3.87882 4.00685 4.07840 4.27117 4.33342 4.49747 4.54102 4.63516 4.66973 4.68720 4.76263 4.83950 4.85136 4.90653 4.90719 4.95912 5.02317 5.05439 5.19559 5.25998 5.27811 5.36901 5.48704 5.55029 5.64386 5.69578 6.29081 6.34535 6.41987 6.85876 6.87247 7.16155 7.89132 8.33298 9.21497 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021110 B = 0.002334 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.044097 B =11993.475519 C =12414.869845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.618 5.618 3 C -0.259 4.259 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.939 5.939 7 Si 0.965 3.035 8 H -0.284 1.284 9 H -0.296 1.296 10 H -0.271 1.271 11 C 0.162 3.838 12 C -0.107 4.107 13 H 0.062 0.938 14 C -0.119 4.119 15 C 0.125 3.875 16 N -0.597 5.597 17 C 0.564 3.436 18 O -0.570 6.570 19 C 0.128 3.872 20 C -0.148 4.148 21 C -0.011 4.011 22 C -0.165 4.165 23 C 0.169 3.831 24 N -0.504 5.504 25 C 0.091 3.909 26 C -0.144 4.144 27 C 0.128 3.872 28 N -0.452 5.452 29 C 0.123 3.877 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.029 0.971 33 H 0.247 0.753 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.155 0.845 41 H 0.199 0.801 42 H 0.206 0.794 43 H 0.187 0.813 44 H 0.162 0.838 45 H 0.067 0.933 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.339 -23.714 -18.519 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.341 5.341 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.251 4.251 6 N -0.586 5.586 7 Si 0.793 3.207 8 H -0.210 1.210 9 H -0.222 1.222 10 H -0.196 1.196 11 C 0.035 3.965 12 C -0.129 4.129 13 H 0.081 0.919 14 C -0.158 4.158 15 C 0.003 3.997 16 N -0.328 5.328 17 C 0.352 3.648 18 O -0.450 6.450 19 C -0.026 4.026 20 C -0.169 4.169 21 C -0.038 4.038 22 C -0.169 4.169 23 C -0.004 4.004 24 N -0.212 5.212 25 C -0.052 4.052 26 C -0.164 4.164 27 C 0.000 4.000 28 N -0.164 5.164 29 C 0.001 3.999 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.173 0.827 41 H 0.216 0.784 42 H 0.223 0.777 43 H 0.204 0.796 44 H 0.179 0.821 45 H 0.085 0.915 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.686 -23.810 -18.284 30.989 hybrid contribution -0.967 2.106 0.169 2.324 sum 6.720 -21.704 -18.116 29.059 Atomic orbital electron populations 1.20533 0.83278 0.95569 0.97424 1.44122 1.01827 1.01946 1.86172 1.19454 0.98647 0.86847 1.33949 0.91051 1.25785 0.98880 1.01868 0.98567 1.70217 1.22075 1.27622 1.38661 0.85377 0.77914 0.79835 0.77550 1.21046 1.22222 1.19648 1.20849 0.96225 0.86673 0.92718 1.22908 0.94165 0.97315 0.98536 0.91899 1.22781 1.01761 0.94686 0.96537 1.22241 0.83869 0.97238 0.96341 1.48665 1.25149 1.40978 1.18001 1.18107 0.83329 0.82314 0.81049 1.90776 1.25107 1.51365 1.77709 1.21255 0.92076 0.94902 0.94322 1.21907 1.01996 0.99956 0.93057 1.21904 0.92433 0.90089 0.99380 1.20240 0.98239 1.01253 0.97216 1.23851 0.90357 0.87998 0.98183 1.67604 1.08304 1.25131 1.20165 1.22723 0.99638 0.94715 0.88105 1.21983 0.94692 0.97015 1.02742 1.19368 0.95974 0.93917 0.90737 1.68075 1.11048 1.06338 1.30963 1.22223 0.98210 0.91407 0.88061 0.97618 0.97518 0.95215 0.94390 0.92795 0.92352 0.87987 0.89081 0.90537 0.89777 0.82705 0.78385 0.77724 0.79626 0.82080 0.91456 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.06 8.61 127.77 1.10 10.16 16 2 N -0.62 -30.96 2.84 -726.93 -2.06 -33.02 16 3 C -0.26 -14.27 9.64 84.04 0.81 -13.46 16 4 H 0.07 3.79 7.87 -2.91 -0.02 3.76 16 5 C -0.06 -3.21 5.07 84.86 0.43 -2.78 16 6 N -0.94 -57.01 10.81 21.65 0.23 -56.78 16 7 Si 0.96 46.09 29.58 68.60 2.03 48.12 16 8 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 C 0.16 6.18 5.17 86.38 0.45 6.62 16 12 C -0.11 -3.50 3.29 -9.40 -0.03 -3.54 16 13 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 14 C -0.12 -2.69 6.42 31.78 0.20 -2.49 16 15 C 0.12 2.95 5.40 86.68 0.47 3.42 16 16 N -0.60 -18.65 3.33 -813.91 -2.71 -21.37 16 17 C 0.56 18.51 7.85 86.95 0.68 19.20 16 18 O -0.57 -22.49 16.53 -3.70 -0.06 -22.55 16 19 C 0.13 3.26 6.73 42.30 0.28 3.55 16 20 C -0.15 -2.86 9.54 22.37 0.21 -2.65 16 21 C -0.01 -0.12 9.92 22.46 0.22 0.10 16 22 C -0.17 -2.37 5.75 -21.23 -0.12 -2.49 16 23 C 0.17 1.78 11.05 85.31 0.94 2.73 16 24 N -0.50 -6.97 10.30 -195.62 -2.02 -8.99 16 25 C 0.09 1.10 11.06 84.08 0.93 2.03 16 26 C -0.14 -2.05 10.08 22.44 0.23 -1.82 16 27 C 0.13 2.40 6.63 40.58 0.27 2.67 16 28 N -0.45 -10.28 6.81 -177.60 -1.21 -11.49 16 29 C 0.12 4.35 4.94 86.86 0.43 4.78 16 30 H 0.01 0.31 7.32 -2.39 -0.02 0.29 16 31 H 0.01 0.34 7.40 -2.39 -0.02 0.33 16 32 H 0.03 1.31 6.20 -2.39 -0.01 1.30 16 33 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 35 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 36 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.81 8.04 -2.39 -0.02 1.79 16 38 H 0.08 1.78 7.40 -2.39 -0.02 1.76 16 39 H 0.08 1.80 7.55 -2.39 -0.02 1.78 16 40 H 0.16 2.93 7.60 -2.91 -0.02 2.91 16 41 H 0.20 0.41 8.06 -2.91 -0.02 0.38 16 42 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.19 1.13 8.06 -2.91 -0.02 1.11 16 44 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.07 2.36 7.20 -2.38 -0.02 2.35 16 46 H 0.05 1.94 8.04 -2.39 -0.02 1.92 16 Total: -1.00 -76.64 376.20 2.70 -73.94 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.99 Total: 6.11 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 7.51 Total: 26.02 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -7.77 Total: -131.65 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.55 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -76.64 2.70 -73.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664841211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.883 kcal (2) G-P(sol) polarization free energy of solvation -76.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds