Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48508 * 109.47047 * 269.99893 * 3 2 1 5 5 H 1.48494 * 109.47220 * 29.99672 * 3 2 1 6 6 H 1.48498 * 109.47120 * 150.00414 * 3 2 1 7 7 C 1.38811 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00434 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.47672 * 134.46162 * 179.97438 * 9 7 2 11 11 C 1.53440 * 85.97748 * 155.72928 * 10 9 7 12 12 C 1.47673 * 134.45097 * 0.03651 * 9 7 2 13 13 C 1.52890 * 113.55905 * 137.63608 * 11 10 9 14 14 N 1.47345 * 108.04781 * 179.97438 * 13 11 10 15 15 C 1.34775 * 121.05603 * 131.59977 * 14 13 11 16 16 O 1.21280 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99971 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.47205 * 180.02562 * 17 15 14 19 19 C 1.42898 * 114.00186 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47319 * 180.02562 * 19 18 17 21 21 H 1.09008 * 109.87086 * 53.99452 * 20 19 18 22 22 C 1.54094 * 109.88146 * 175.00350 * 20 19 18 23 23 C 1.54808 * 104.19256 * 121.45338 * 22 20 19 24 24 C 1.54998 * 102.09117 * 20.88148 * 23 22 20 25 25 O 1.43747 * 109.88055 * 292.83543 * 20 19 18 26 26 C 1.47126 * 117.88684 * 311.87439 * 14 13 11 27 27 C 1.52765 * 108.97844 * 51.89821 * 26 14 13 28 28 O 1.42493 * 113.81260 * 268.76608 * 11 10 9 29 29 H 0.96998 * 120.00144 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.78695 * 41.46744 * 10 9 7 31 31 H 1.08999 * 113.79470 * 269.99496 * 10 9 7 32 32 H 1.08992 * 113.79655 * 90.00380 * 12 9 7 33 33 H 1.09007 * 113.79066 * 318.52588 * 12 9 7 34 34 H 1.09003 * 109.75064 * 60.33501 * 13 11 10 35 35 H 1.09004 * 109.78465 * 299.63424 * 13 11 10 36 36 H 1.09001 * 109.47017 * 60.00358 * 17 15 14 37 37 H 1.08999 * 109.47472 * 300.00035 * 17 15 14 38 38 H 1.09002 * 109.47259 * 300.00293 * 19 18 17 39 39 H 1.09001 * 109.47074 * 60.00315 * 19 18 17 40 40 H 1.09005 * 110.48825 * 240.12897 * 22 20 19 41 41 H 1.09002 * 110.49084 * 2.77415 * 22 20 19 42 42 H 1.08998 * 110.90817 * 139.07795 * 23 22 20 43 43 H 1.08992 * 110.91004 * 262.65121 * 23 22 20 44 44 H 1.09005 * 110.62027 * 81.47743 * 24 23 22 45 45 H 1.08997 * 110.62148 * 204.31633 * 24 23 22 46 46 H 1.09003 * 109.59310 * 171.73008 * 26 14 13 47 47 H 1.09000 * 109.59384 * 292.18095 * 26 14 13 48 48 H 1.09002 * 109.56032 * 186.06549 * 27 26 14 49 49 H 1.08994 * 109.36127 * 66.04786 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 1.7213 -3.8108 0.0019 11 6 0.3487 -4.0807 0.6323 12 6 -0.1043 -2.7567 0.0017 13 6 -0.3596 -5.3055 0.0529 14 7 -1.6551 -5.4511 0.7397 15 6 -2.7933 -5.6423 0.0438 16 8 -2.7616 -5.6975 -1.1673 17 6 -4.1054 -5.7876 0.7706 18 8 -5.1567 -5.9799 -0.1780 19 6 -6.4503 -6.1301 0.4104 20 6 -7.4921 -6.3293 -0.6923 21 1 -7.1971 -7.1586 -1.3353 22 6 -8.8701 -6.6168 -0.0654 23 6 -9.7785 -5.4887 -0.6119 24 6 -9.0015 -5.0275 -1.8712 25 8 -7.6185 -5.1261 -1.4685 26 6 -1.6674 -5.3748 2.2089 27 6 -0.9468 -4.1008 2.6464 28 8 0.3568 -4.0653 2.0571 29 1 -0.4850 0.8400 -0.0004 30 1 2.5597 -4.0338 0.6619 31 1 1.8383 -4.2350 -0.9953 32 1 -0.5300 -2.8676 -0.9955 33 1 -0.7168 -2.1422 0.6616 34 1 0.2476 -6.1953 0.2196 35 1 -0.5230 -5.1661 -1.0158 36 1 -4.3005 -4.8864 1.3519 37 1 -4.0575 -6.6476 1.4386 38 1 -6.4505 -6.9971 1.0709 39 1 -6.6944 -5.2361 0.9842 40 1 -9.2386 -7.5918 -0.3848 41 1 -8.8125 -6.5673 1.0220 42 1 -10.7609 -5.8765 -0.8813 43 1 -9.8674 -4.6769 0.1099 44 1 -9.2046 -5.6909 -2.7120 45 1 -9.2576 -3.9989 -2.1250 46 1 -2.6974 -5.3513 2.5651 47 1 -1.1545 -6.2423 2.6243 48 1 -0.8555 -4.0878 3.7325 49 1 -1.5178 -3.2321 2.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673521658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -90.229667 kcal Electronic energy + Delta-G solvation = -30549.430347 eV Core-core repulsion = 26286.722342 eV Total energy + Delta-G solvation = -4262.708005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41009 -39.80636 -38.81167 -37.30000 -36.18884 -34.40306 -32.52678 -32.25344 -31.19724 -30.11142 -28.76932 -27.38669 -25.80829 -25.07783 -24.93306 -23.29329 -22.39020 -21.80189 -21.32754 -19.37489 -18.75813 -17.64681 -17.02705 -16.85440 -16.55045 -16.39499 -16.05070 -15.72281 -15.57859 -15.28840 -14.91331 -14.66415 -14.30892 -14.09145 -13.98374 -13.93301 -13.44151 -13.28045 -13.08127 -12.71364 -12.35012 -12.23948 -12.17992 -12.02338 -11.85193 -11.64242 -11.48507 -11.31315 -11.10716 -11.06921 -10.86405 -10.77223 -10.63057 -10.21481 -9.93984 -9.90705 -9.89302 -9.57686 -9.48225 -9.20909 -8.78495 -8.22528 -6.83700 -5.70573 -3.03018 2.62842 2.73364 3.43526 3.47714 3.50094 3.52189 3.64259 4.05537 4.15408 4.38808 4.48482 4.50850 4.56996 4.81031 4.82936 4.90305 4.91783 4.95765 5.02383 5.07753 5.10540 5.14973 5.19573 5.27145 5.28961 5.32521 5.39078 5.41878 5.51764 5.59094 5.62814 5.69138 5.74568 5.84342 5.98868 6.09725 6.32174 6.45131 6.52514 6.57463 6.64873 6.90779 7.05452 7.23469 7.44236 7.54269 7.83519 8.02332 8.27981 9.09014 9.75804 10.62336 11.46454 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002490 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.037258 B =11242.901376 C =12455.154923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.218 4.218 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.137 3.863 11 C 0.049 3.951 12 C 0.151 3.849 13 C 0.102 3.898 14 N -0.611 5.611 15 C 0.518 3.482 16 O -0.515 6.515 17 C 0.047 3.953 18 O -0.353 6.353 19 C 0.062 3.938 20 C 0.079 3.921 21 H 0.078 0.922 22 C -0.149 4.149 23 C -0.156 4.156 24 C 0.042 3.958 25 O -0.359 6.359 26 C 0.073 3.927 27 C 0.046 3.954 28 O -0.341 6.341 29 H 0.253 0.747 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.101 0.899 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 -17.061 6.181 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.330 5.330 10 C 0.010 3.990 11 C 0.007 3.993 12 C 0.026 3.974 13 C -0.021 4.021 14 N -0.347 5.347 15 C 0.304 3.696 16 O -0.389 6.389 17 C -0.033 4.033 18 O -0.271 6.271 19 C -0.015 4.015 20 C 0.021 3.979 21 H 0.096 0.904 22 C -0.187 4.187 23 C -0.194 4.194 24 C -0.035 4.035 25 O -0.278 6.278 26 C -0.050 4.050 27 C -0.032 4.032 28 O -0.259 6.259 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.689 -16.581 5.375 24.834 hybrid contribution -0.102 0.797 0.272 0.848 sum -17.791 -15.784 5.647 24.445 Atomic orbital electron populations 1.69817 1.05026 1.25250 1.56810 1.24780 0.95674 0.97512 1.02564 0.86104 0.78590 0.83435 0.77535 1.21650 1.21697 1.20615 1.18991 0.90237 0.81759 1.43573 0.90129 1.45801 1.01987 0.99141 1.86065 1.22487 0.93200 0.86757 0.96552 1.23716 0.99199 0.94597 0.81802 1.22687 0.88598 0.88911 0.97218 1.22261 0.82336 0.98409 0.99094 1.48081 1.07263 1.72513 1.06839 1.20105 0.84515 0.77058 0.87892 1.90735 1.85944 1.48655 1.13567 1.22224 0.87264 1.01868 0.91953 1.88084 1.14183 1.93590 1.31270 1.22785 0.83062 1.00671 0.94983 1.22727 0.93632 0.89085 0.92462 0.90411 1.22939 0.94134 0.99850 1.01790 1.23147 0.99224 0.98612 0.98367 1.23586 0.81584 1.02245 0.96080 1.89069 1.26138 1.41925 1.70632 1.22371 1.02031 1.00316 0.80284 1.22783 0.85979 0.95935 0.98516 1.87933 1.25592 1.94287 1.18039 0.93716 0.92584 0.93198 0.94790 0.90619 0.91198 0.87945 0.90140 0.90536 0.91964 0.92257 0.90085 0.90146 0.90099 0.90322 0.92133 0.88802 0.89526 0.90444 0.88050 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.27 11.39 55.49 0.63 -27.63 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.22 -6.33 10.70 -15.06 -0.16 -6.50 16 8 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 9 N -0.60 -16.18 3.70 -180.31 -0.67 -16.85 16 10 C 0.14 2.90 8.33 -3.18 -0.03 2.88 16 11 C 0.05 0.96 1.21 -90.29 -0.11 0.85 16 12 C 0.15 3.77 6.65 -3.16 -0.02 3.75 16 13 C 0.10 1.72 5.78 -3.64 -0.02 1.69 16 14 N -0.61 -9.21 3.03 -172.71 -0.52 -9.73 16 15 C 0.52 8.46 7.79 -10.99 -0.09 8.37 16 16 O -0.51 -10.78 15.99 -14.35 -0.23 -11.01 16 17 C 0.05 0.56 4.79 36.00 0.17 0.74 16 18 O -0.35 -5.08 9.87 -58.40 -0.58 -5.65 16 19 C 0.06 0.61 5.39 37.16 0.20 0.81 16 20 C 0.08 0.78 3.71 -26.16 -0.10 0.68 16 21 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 22 C -0.15 -0.92 6.64 -25.21 -0.17 -1.09 16 23 C -0.16 -0.96 7.15 -24.72 -0.18 -1.13 16 24 C 0.04 0.35 7.72 38.21 0.29 0.65 16 25 O -0.36 -4.61 11.18 -36.85 -0.41 -5.02 16 26 C 0.07 0.84 6.47 -3.82 -0.02 0.81 16 27 C 0.05 0.66 6.87 37.04 0.25 0.92 16 28 O -0.34 -6.52 10.52 -35.23 -0.37 -6.89 16 29 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.03 0.90 7.94 -51.93 -0.41 0.49 16 33 H 0.08 2.08 6.31 -51.92 -0.33 1.75 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16 36 H 0.08 0.83 7.68 -51.93 -0.40 0.44 16 37 H 0.08 0.65 8.00 -51.93 -0.42 0.23 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.40 7.70 -51.93 -0.40 0.00 16 42 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.70 6.03 -51.93 -0.31 0.39 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.06 1.01 7.19 -51.93 -0.37 0.64 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -38.54 390.95 -9.38 -47.92 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -8.04 Total: -1.87 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -0.06 Total: 13.07 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.56 Total: -54.22 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.59 Total: -28.58 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.54 -9.38 -47.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673521658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.306 kcal (2) G-P(sol) polarization free energy of solvation -38.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds