Wall clock time and date at job start Sat Apr 11 2020 06:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48508 * 109.47047 * 269.99893 * 3 2 1 5 5 H 1.48494 * 109.47220 * 29.99672 * 3 2 1 6 6 H 1.48498 * 109.47120 * 150.00414 * 3 2 1 7 7 C 1.38811 * 120.00037 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00434 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.47672 * 134.46162 * 179.97438 * 9 7 2 11 11 C 1.53440 * 85.97748 * 155.72928 * 10 9 7 12 12 C 1.47673 * 134.45097 * 0.03651 * 9 7 2 13 13 C 1.52890 * 113.55905 * 137.63608 * 11 10 9 14 14 N 1.47345 * 108.04781 * 179.97438 * 13 11 10 15 15 C 1.34775 * 121.05603 * 131.59977 * 14 13 11 16 16 O 1.21280 * 119.99930 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99971 * 180.02562 * 15 14 13 18 18 O 1.42902 * 109.47205 * 180.02562 * 17 15 14 19 19 C 1.42898 * 114.00186 * 179.97438 * 18 17 15 20 20 C 1.52997 * 109.47319 * 180.02562 * 19 18 17 21 21 H 1.09008 * 109.87086 * 53.99452 * 20 19 18 22 22 C 1.54094 * 109.88146 * 175.00350 * 20 19 18 23 23 C 1.54808 * 104.19256 * 121.45338 * 22 20 19 24 24 C 1.54998 * 102.09117 * 20.88148 * 23 22 20 25 25 O 1.43747 * 109.88055 * 292.83543 * 20 19 18 26 26 C 1.47126 * 117.88684 * 311.87439 * 14 13 11 27 27 C 1.52765 * 108.97844 * 51.89821 * 26 14 13 28 28 O 1.42493 * 113.81260 * 268.76608 * 11 10 9 29 29 H 0.96998 * 120.00144 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.78695 * 41.46744 * 10 9 7 31 31 H 1.08999 * 113.79470 * 269.99496 * 10 9 7 32 32 H 1.08992 * 113.79655 * 90.00380 * 12 9 7 33 33 H 1.09007 * 113.79066 * 318.52588 * 12 9 7 34 34 H 1.09003 * 109.75064 * 60.33501 * 13 11 10 35 35 H 1.09004 * 109.78465 * 299.63424 * 13 11 10 36 36 H 1.09001 * 109.47017 * 60.00358 * 17 15 14 37 37 H 1.08999 * 109.47472 * 300.00035 * 17 15 14 38 38 H 1.09002 * 109.47259 * 300.00293 * 19 18 17 39 39 H 1.09001 * 109.47074 * 60.00315 * 19 18 17 40 40 H 1.09005 * 110.48825 * 240.12897 * 22 20 19 41 41 H 1.09002 * 110.49084 * 2.77415 * 22 20 19 42 42 H 1.08998 * 110.90817 * 139.07795 * 23 22 20 43 43 H 1.08992 * 110.91004 * 262.65121 * 23 22 20 44 44 H 1.09005 * 110.62027 * 81.47743 * 24 23 22 45 45 H 1.08997 * 110.62148 * 204.31633 * 24 23 22 46 46 H 1.09003 * 109.59310 * 171.73008 * 26 14 13 47 47 H 1.09000 * 109.59384 * 292.18095 * 26 14 13 48 48 H 1.09002 * 109.56032 * 186.06549 * 27 26 14 49 49 H 1.08994 * 109.36127 * 66.04786 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 1.7213 -3.8108 0.0019 11 6 0.3487 -4.0807 0.6323 12 6 -0.1043 -2.7567 0.0017 13 6 -0.3596 -5.3055 0.0529 14 7 -1.6551 -5.4511 0.7397 15 6 -2.7933 -5.6423 0.0438 16 8 -2.7616 -5.6975 -1.1673 17 6 -4.1054 -5.7876 0.7706 18 8 -5.1567 -5.9799 -0.1780 19 6 -6.4503 -6.1301 0.4104 20 6 -7.4921 -6.3293 -0.6923 21 1 -7.1971 -7.1586 -1.3353 22 6 -8.8701 -6.6168 -0.0654 23 6 -9.7785 -5.4887 -0.6119 24 6 -9.0015 -5.0275 -1.8712 25 8 -7.6185 -5.1261 -1.4685 26 6 -1.6674 -5.3748 2.2089 27 6 -0.9468 -4.1008 2.6464 28 8 0.3568 -4.0653 2.0571 29 1 -0.4850 0.8400 -0.0004 30 1 2.5597 -4.0338 0.6619 31 1 1.8383 -4.2350 -0.9953 32 1 -0.5300 -2.8676 -0.9955 33 1 -0.7168 -2.1422 0.6616 34 1 0.2476 -6.1953 0.2196 35 1 -0.5230 -5.1661 -1.0158 36 1 -4.3005 -4.8864 1.3519 37 1 -4.0575 -6.6476 1.4386 38 1 -6.4505 -6.9971 1.0709 39 1 -6.6944 -5.2361 0.9842 40 1 -9.2386 -7.5918 -0.3848 41 1 -8.8125 -6.5673 1.0220 42 1 -10.7609 -5.8765 -0.8813 43 1 -9.8674 -4.6769 0.1099 44 1 -9.2046 -5.6909 -2.7120 45 1 -9.2576 -3.9989 -2.1250 46 1 -2.6974 -5.3513 2.5651 47 1 -1.1545 -6.2423 2.6243 48 1 -0.8555 -4.0878 3.7325 49 1 -1.5178 -3.2321 2.3188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673521658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:17 Heat of formation + Delta-G solvation = -119.426992 kcal Electronic energy + Delta-G solvation = -30550.696438 eV Core-core repulsion = 26286.722342 eV Total energy + Delta-G solvation = -4263.974096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77291 -40.58782 -40.14947 -38.31454 -37.74642 -35.77455 -34.31843 -33.17542 -32.04071 -31.48952 -29.87304 -29.06105 -27.12443 -26.86815 -25.87560 -24.63916 -23.52784 -23.00482 -21.97831 -20.82232 -20.11571 -18.85242 -18.64654 -17.95074 -17.68879 -17.30871 -17.19864 -16.87611 -16.78220 -16.55339 -16.20520 -15.98718 -15.75232 -15.48608 -15.13991 -14.97643 -14.83551 -14.51729 -14.31309 -14.02663 -13.89876 -13.38452 -13.15546 -13.08247 -12.94369 -12.79593 -12.74124 -12.55730 -12.52374 -12.28767 -12.07702 -12.06648 -11.96110 -11.73770 -11.56057 -11.46957 -10.99421 -10.82957 -10.76467 -10.71628 -10.66244 -9.57144 -8.97603 -7.92826 -5.27889 1.41945 1.45004 1.47031 1.54106 1.62020 2.44040 2.63772 2.71706 2.96241 3.23970 3.32306 3.44633 3.61276 3.63187 3.77458 3.90777 3.96335 3.97808 4.08082 4.14586 4.16933 4.22819 4.27761 4.34214 4.42004 4.46961 4.48031 4.60720 4.63089 4.63798 4.68800 4.79910 4.80363 4.85585 4.90608 4.95289 4.96077 5.07312 5.10308 5.20015 5.20512 5.27307 5.43199 5.86005 5.93065 6.10340 6.30711 6.35360 6.85887 7.07288 7.56158 8.49291 9.23802 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002490 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.037258 B =11242.901376 C =12455.154923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.984 3.016 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.635 5.635 10 C 0.134 3.866 11 C 0.081 3.919 12 C 0.151 3.849 13 C 0.109 3.891 14 N -0.611 5.611 15 C 0.507 3.493 16 O -0.576 6.576 17 C 0.051 3.949 18 O -0.397 6.397 19 C 0.057 3.943 20 C 0.067 3.933 21 H 0.064 0.936 22 C -0.140 4.140 23 C -0.149 4.149 24 C 0.030 3.970 25 O -0.405 6.405 26 C 0.077 3.923 27 C 0.036 3.964 28 O -0.360 6.360 29 H 0.247 0.753 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.004 0.996 33 H 0.041 0.959 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.111 0.889 48 H 0.139 0.861 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.738 -19.175 8.947 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.812 3.188 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.362 5.362 10 C 0.009 3.991 11 C 0.039 3.961 12 C 0.024 3.976 13 C -0.015 4.015 14 N -0.346 5.346 15 C 0.296 3.704 16 O -0.454 6.454 17 C -0.028 4.028 18 O -0.317 6.317 19 C -0.019 4.019 20 C 0.009 3.991 21 H 0.082 0.918 22 C -0.177 4.177 23 C -0.187 4.187 24 C -0.046 4.046 25 O -0.325 6.325 26 C -0.044 4.044 27 C -0.040 4.040 28 O -0.278 6.278 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.146 0.854 47 H 0.129 0.871 48 H 0.156 0.844 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -18.311 -18.737 8.191 27.449 hybrid contribution 0.090 1.448 -0.586 1.565 sum -18.221 -17.289 7.606 26.244 Atomic orbital electron populations 1.70044 1.06684 1.25536 1.58372 1.25723 0.96609 1.01203 1.02957 0.84992 0.77740 0.78627 0.77449 1.21417 1.21964 1.18841 1.19454 0.90931 0.83108 1.42524 0.89415 1.46220 1.03026 1.00772 1.86165 1.22720 0.94664 0.83760 0.97946 1.23146 0.97558 0.92971 0.82468 1.22515 0.87599 0.91954 0.95483 1.22012 0.83794 0.97974 0.97717 1.48225 1.06287 1.71607 1.08520 1.21054 0.86121 0.75676 0.87507 1.90704 1.86885 1.51487 1.16359 1.22350 0.84345 1.04729 0.91342 1.88042 1.16094 1.94016 1.33511 1.23066 0.81073 1.02444 0.95278 1.22970 0.95877 0.87753 0.92494 0.91763 1.22936 0.91611 1.00524 1.02646 1.23139 0.99851 0.98719 0.96953 1.23803 0.80511 1.02655 0.97651 1.89020 1.28598 1.43385 1.71545 1.22651 1.04619 0.99508 0.77670 1.23136 0.83997 0.96624 1.00293 1.87889 1.28560 1.94376 1.16983 0.94420 0.91175 0.91330 0.97803 0.94101 0.87839 0.90470 0.88310 0.85699 0.88244 0.91819 0.88412 0.88262 0.87890 0.90236 0.91653 0.88817 0.85368 0.87140 0.84359 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.33 11.39 21.65 0.25 -61.08 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.98 47.88 29.55 68.60 2.03 49.91 16 4 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.23 -13.77 10.70 84.03 0.90 -12.87 16 8 H 0.09 4.91 7.83 -2.91 -0.02 4.89 16 9 N -0.64 -35.06 3.70 -729.25 -2.70 -37.76 16 10 C 0.13 5.70 8.33 86.30 0.72 6.42 16 11 C 0.08 3.20 1.21 -10.49 -0.01 3.19 16 12 C 0.15 7.90 6.65 86.31 0.57 8.48 16 13 C 0.11 3.60 5.78 86.18 0.50 4.10 16 14 N -0.61 -17.48 3.03 -818.72 -2.48 -19.97 16 15 C 0.51 16.31 7.79 87.66 0.68 16.99 16 16 O -0.58 -25.12 15.99 16.01 0.26 -24.87 16 17 C 0.05 1.11 4.79 71.24 0.34 1.45 16 18 O -0.40 -11.14 9.87 -126.82 -1.25 -12.39 16 19 C 0.06 1.02 5.39 71.98 0.39 1.41 16 20 C 0.07 1.27 3.71 30.96 0.11 1.39 16 21 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 22 C -0.14 -1.39 6.64 31.58 0.21 -1.18 16 23 C -0.15 -1.56 7.15 31.89 0.23 -1.33 16 24 C 0.03 0.51 7.72 72.67 0.56 1.07 16 25 O -0.41 -10.78 11.18 -147.43 -1.65 -12.43 16 26 C 0.08 1.45 6.47 86.18 0.56 2.01 16 27 C 0.04 0.98 6.87 71.90 0.49 1.47 16 28 O -0.36 -13.35 10.52 -148.98 -1.57 -14.91 16 29 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.07 2.77 8.14 -2.39 -0.02 2.76 16 31 H 0.07 2.67 8.09 -2.39 -0.02 2.65 16 32 H 0.00 0.24 7.94 -2.39 -0.02 0.22 16 33 H 0.04 2.40 6.31 -2.38 -0.02 2.38 16 34 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.08 2.98 6.91 -2.38 -0.02 2.97 16 36 H 0.10 1.76 7.68 -2.39 -0.02 1.74 16 37 H 0.13 1.48 8.00 -2.39 -0.02 1.46 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.10 0.63 7.70 -2.39 -0.02 0.61 16 42 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.13 1.39 6.03 -2.39 -0.01 1.38 16 47 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 49 H 0.03 1.00 7.19 -2.39 -0.02 0.98 16 Total: -1.00 -91.90 390.95 0.54 -91.36 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 0.94 Total: 13.44 kcal Atomic # 6 Polarization: 21.98 SS G_CDS: 6.72 Total: 28.70 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -4.94 Total: -118.81 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -4.21 Total: -64.60 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.91 kcal Total: -91.90 0.54 -91.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673521658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.068 kcal (2) G-P(sol) polarization free energy of solvation -91.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds