Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00057 * 2 1 4 4 H 1.48496 * 109.46865 * 239.99630 * 3 2 1 5 5 H 1.48504 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47056 * 120.00055 * 3 2 1 7 7 C 1.38811 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.47671 * 134.45447 * 180.02562 * 9 7 2 11 11 C 1.53443 * 85.97789 * 155.67702 * 10 9 7 12 12 C 1.47664 * 134.45732 * 359.96211 * 9 7 2 13 13 C 1.52899 * 113.55615 * 137.62908 * 11 10 9 14 14 N 1.47336 * 108.04385 * 179.97438 * 13 11 10 15 15 C 1.34784 * 121.05477 * 131.60038 * 14 13 11 16 16 O 1.21275 * 119.99772 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99974 * 179.97438 * 15 14 13 18 18 O 1.42896 * 109.47276 * 180.02562 * 17 15 14 19 19 C 1.42902 * 114.00520 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47316 * 180.02562 * 19 18 17 21 21 H 1.08997 * 110.67587 * 303.48791 * 20 19 18 22 22 C 1.55000 * 110.61526 * 180.52197 * 20 19 18 23 23 C 1.54818 * 102.09030 * 204.47771 * 22 20 19 24 24 C 1.54097 * 104.18808 * 20.87976 * 23 22 20 25 25 O 1.43745 * 107.29442 * 2.03270 * 24 23 22 26 26 C 1.47131 * 117.89080 * 311.87904 * 14 13 11 27 27 C 1.52762 * 108.97833 * 51.89779 * 26 14 13 28 28 O 1.42488 * 113.81058 * 268.75772 * 11 10 9 29 29 H 0.97003 * 119.99661 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.79281 * 41.40977 * 10 9 7 31 31 H 1.09005 * 113.89518 * 269.95411 * 10 9 7 32 32 H 1.09005 * 113.79373 * 90.05193 * 12 9 7 33 33 H 1.09000 * 113.79571 * 318.58063 * 12 9 7 34 34 H 1.09004 * 109.74758 * 60.33747 * 13 11 10 35 35 H 1.08998 * 109.79079 * 299.63551 * 13 11 10 36 36 H 1.09005 * 109.47068 * 60.00376 * 17 15 14 37 37 H 1.09005 * 109.47647 * 300.00785 * 17 15 14 38 38 H 1.09001 * 109.47263 * 59.99650 * 19 18 17 39 39 H 1.09000 * 109.46943 * 300.00169 * 19 18 17 40 40 H 1.08996 * 110.90766 * 86.28222 * 22 20 19 41 41 H 1.09001 * 110.94010 * 322.68241 * 22 20 19 42 42 H 1.09004 * 110.48564 * 262.20686 * 23 22 20 43 43 H 1.08997 * 110.48807 * 139.56009 * 23 22 20 44 44 H 1.08998 * 109.88273 * 242.60534 * 24 23 22 45 45 H 1.08998 * 110.00322 * 121.52715 * 24 23 22 46 46 H 1.09004 * 109.59313 * 171.72892 * 26 14 13 47 47 H 1.09003 * 109.58745 * 292.17537 * 26 14 13 48 48 H 1.09003 * 109.56746 * 186.07143 * 27 26 14 49 49 H 1.08991 * 109.34333 * 66.03915 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8108 0.0015 11 6 0.3481 -4.0806 0.6310 12 6 -0.1044 -2.7567 0.0008 13 6 -0.3599 -5.3055 0.0512 14 7 -1.6557 -5.4509 0.7372 15 6 -2.7936 -5.6422 0.0405 16 8 -2.7611 -5.6975 -1.1705 17 6 -4.1060 -5.7884 0.7665 18 8 -5.1567 -5.9806 -0.1827 19 6 -6.4507 -6.1305 0.4048 20 6 -7.4918 -6.3296 -0.6986 21 1 -7.4651 -5.5015 -1.4068 22 6 -8.9093 -6.4822 -0.0903 23 6 -9.6517 -7.2755 -1.1932 24 6 -8.5230 -7.9389 -2.0060 25 8 -7.2795 -7.5861 -1.3772 26 6 -1.6691 -5.3743 2.2064 27 6 -0.9488 -4.1003 2.6441 28 8 0.3554 -4.0650 2.0558 29 1 -0.4850 0.8401 -0.0004 30 1 2.5591 -4.0337 0.6619 31 1 1.8395 -4.2368 -0.9949 32 1 -0.5302 -2.8672 -0.9966 33 1 -0.7169 -2.1423 0.6607 34 1 0.2472 -6.1953 0.2185 35 1 -0.5225 -5.1663 -1.0175 36 1 -4.3018 -4.8877 1.3483 37 1 -4.0581 -6.6488 1.4341 38 1 -6.6951 -5.2365 0.9785 39 1 -6.4515 -6.9975 1.0653 40 1 -9.3722 -5.5080 0.0665 41 1 -8.8749 -7.0489 0.8402 42 1 -10.2305 -6.6010 -1.8242 43 1 -10.2979 -8.0327 -0.7491 44 1 -8.5380 -7.5692 -3.0312 45 1 -8.6468 -9.0218 -2.0008 46 1 -2.6993 -5.3506 2.5619 47 1 -1.1565 -6.2418 2.6222 48 1 -0.8581 -4.0870 3.7303 49 1 -1.5196 -3.2318 2.3157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673521659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -90.712086 kcal Electronic energy + Delta-G solvation = -30448.841959 eV Core-core repulsion = 26186.113035 eV Total energy + Delta-G solvation = -4262.728924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41568 -39.78498 -38.82734 -37.33244 -36.19732 -34.40894 -32.50863 -32.26597 -31.25423 -30.12287 -28.78457 -27.40414 -25.88258 -25.10987 -24.98010 -23.29925 -22.03323 -21.82867 -21.53387 -19.38925 -18.76455 -17.60555 -17.17392 -16.87899 -16.61071 -16.28655 -16.10073 -15.71474 -15.62535 -15.28130 -14.90435 -14.73103 -14.35985 -14.10549 -14.02795 -13.82867 -13.42962 -13.28866 -13.12116 -12.71870 -12.37230 -12.26388 -12.15010 -12.10029 -11.90757 -11.64094 -11.47881 -11.31720 -11.11772 -11.06421 -10.86034 -10.79496 -10.63618 -10.24128 -9.95963 -9.93056 -9.89509 -9.58609 -9.48883 -9.21976 -8.79446 -8.23159 -6.85040 -5.72082 -3.04340 2.62178 2.72224 3.43063 3.46411 3.47908 3.49755 3.59293 4.04851 4.15699 4.38276 4.47602 4.50800 4.57327 4.77420 4.83111 4.89253 4.91056 4.95287 4.99912 5.06911 5.10740 5.14030 5.17292 5.26421 5.31573 5.31817 5.38810 5.40264 5.48936 5.57350 5.59388 5.69278 5.73952 5.83605 5.97942 6.09285 6.31599 6.44623 6.51696 6.56555 6.62130 6.88109 7.03886 7.21683 7.43753 7.52606 7.82549 8.01000 8.27457 9.07677 9.74433 10.61057 11.44964 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002287 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.969759 B =12239.871809 C =12984.767742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.218 4.218 8 H 0.081 0.919 9 N -0.604 5.604 10 C 0.136 3.864 11 C 0.049 3.951 12 C 0.152 3.848 13 C 0.102 3.898 14 N -0.611 5.611 15 C 0.518 3.482 16 O -0.515 6.515 17 C 0.047 3.953 18 O -0.354 6.354 19 C 0.067 3.933 20 C 0.079 3.921 21 H 0.081 0.919 22 C -0.148 4.148 23 C -0.155 4.155 24 C 0.043 3.957 25 O -0.363 6.363 26 C 0.073 3.927 27 C 0.046 3.954 28 O -0.341 6.341 29 H 0.253 0.747 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.037 -16.447 5.832 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.346 4.346 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.010 3.990 11 C 0.007 3.993 12 C 0.026 3.974 13 C -0.021 4.021 14 N -0.347 5.347 15 C 0.304 3.696 16 O -0.389 6.389 17 C -0.033 4.033 18 O -0.271 6.271 19 C -0.010 4.010 20 C 0.021 3.979 21 H 0.099 0.901 22 C -0.186 4.186 23 C -0.193 4.193 24 C -0.034 4.034 25 O -0.282 6.282 26 C -0.050 4.050 27 C -0.032 4.032 28 O -0.259 6.259 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.120 0.880 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.605 -16.234 5.056 24.475 hybrid contribution -0.146 1.059 0.185 1.085 sum -17.751 -15.175 5.241 23.934 Atomic orbital electron populations 1.69812 1.05034 1.25341 1.56829 1.24777 0.95679 0.97512 1.02560 0.86178 0.78435 0.83100 0.77912 1.21190 1.21625 1.21091 1.18948 0.90224 0.81770 1.43612 0.90170 1.45777 1.01976 0.99132 1.86074 1.22488 0.93208 0.86733 0.96578 1.23711 0.99202 0.94585 0.81805 1.22676 0.88608 0.88920 0.97194 1.22261 0.82332 0.98419 0.99093 1.48081 1.07258 1.72511 1.06841 1.20100 0.84535 0.77045 0.87885 1.90735 1.85959 1.48632 1.13584 1.22229 0.87258 1.01867 0.91956 1.88084 1.14230 1.93578 1.31249 1.22584 0.82971 1.00594 0.94820 1.23141 0.92626 0.88447 0.93659 0.90086 1.23115 0.94702 1.01526 0.99239 1.22934 0.98648 1.00075 0.97648 1.23162 0.83424 1.00367 0.96426 1.89013 1.31646 1.37785 1.69759 1.22375 1.02039 1.00327 0.80278 1.22783 0.85963 0.95907 0.98532 1.87937 1.25585 1.94285 1.18051 0.93692 0.92592 0.93183 0.94818 0.90629 0.91184 0.87945 0.90174 0.90401 0.91516 0.92304 0.89706 0.90175 0.90473 0.90338 0.92273 0.89869 0.89513 0.90427 0.88047 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.04 11.39 55.49 0.63 -27.41 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -16.06 3.70 -180.32 -0.67 -16.73 16 10 C 0.14 2.89 8.33 -3.18 -0.03 2.86 16 11 C 0.05 0.96 1.21 -90.31 -0.11 0.85 16 12 C 0.15 3.73 6.65 -3.18 -0.02 3.71 16 13 C 0.10 1.71 5.78 -3.64 -0.02 1.69 16 14 N -0.61 -9.16 3.03 -172.71 -0.52 -9.68 16 15 C 0.52 8.40 7.79 -10.99 -0.09 8.32 16 16 O -0.51 -10.74 15.99 -14.35 -0.23 -10.97 16 17 C 0.05 0.56 4.79 36.00 0.17 0.73 16 18 O -0.35 -5.02 9.87 -57.99 -0.57 -5.59 16 19 C 0.07 0.65 5.68 37.16 0.21 0.86 16 20 C 0.08 0.77 3.63 -25.68 -0.09 0.68 16 21 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.15 -0.93 6.59 -24.72 -0.16 -1.10 16 23 C -0.16 -0.92 7.01 -25.20 -0.18 -1.09 16 24 C 0.04 0.36 7.70 37.73 0.29 0.65 16 25 O -0.36 -4.42 11.22 -36.17 -0.41 -4.82 16 26 C 0.07 0.83 6.47 -3.82 -0.02 0.80 16 27 C 0.05 0.66 6.87 37.04 0.25 0.91 16 28 O -0.34 -6.48 10.52 -35.23 -0.37 -6.85 16 29 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.03 0.88 7.94 -51.93 -0.41 0.47 16 33 H 0.08 2.05 6.30 -51.93 -0.33 1.72 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.89 6.91 -51.93 -0.36 1.54 16 36 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 37 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.44 8.06 -51.93 -0.42 0.02 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.69 6.03 -51.93 -0.31 0.38 16 47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 49 H 0.06 0.99 7.19 -51.93 -0.37 0.61 16 LS Contribution 391.34 15.07 5.90 5.90 Total: -1.00 -38.10 391.34 -9.37 -47.47 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.06 Total: -2.00 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -0.05 Total: 13.05 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.56 Total: -53.82 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -1.58 Total: -28.23 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.10 -9.37 -47.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673521659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.238 kcal (2) G-P(sol) polarization free energy of solvation -38.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds