Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00057 * 2 1 4 4 H 1.48496 * 109.46865 * 239.99630 * 3 2 1 5 5 H 1.48504 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47056 * 120.00055 * 3 2 1 7 7 C 1.38811 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.47671 * 134.45447 * 180.02562 * 9 7 2 11 11 C 1.53443 * 85.97789 * 155.67702 * 10 9 7 12 12 C 1.47664 * 134.45732 * 359.96211 * 9 7 2 13 13 C 1.52899 * 113.55615 * 137.62908 * 11 10 9 14 14 N 1.47336 * 108.04385 * 179.97438 * 13 11 10 15 15 C 1.34784 * 121.05477 * 131.60038 * 14 13 11 16 16 O 1.21275 * 119.99772 * 0.02562 * 15 14 13 17 17 C 1.50694 * 119.99974 * 179.97438 * 15 14 13 18 18 O 1.42896 * 109.47276 * 180.02562 * 17 15 14 19 19 C 1.42902 * 114.00520 * 180.02562 * 18 17 15 20 20 C 1.52998 * 109.47316 * 180.02562 * 19 18 17 21 21 H 1.08997 * 110.67587 * 303.48791 * 20 19 18 22 22 C 1.55000 * 110.61526 * 180.52197 * 20 19 18 23 23 C 1.54818 * 102.09030 * 204.47771 * 22 20 19 24 24 C 1.54097 * 104.18808 * 20.87976 * 23 22 20 25 25 O 1.43745 * 107.29442 * 2.03270 * 24 23 22 26 26 C 1.47131 * 117.89080 * 311.87904 * 14 13 11 27 27 C 1.52762 * 108.97833 * 51.89779 * 26 14 13 28 28 O 1.42488 * 113.81058 * 268.75772 * 11 10 9 29 29 H 0.97003 * 119.99661 * 0.02562 * 1 2 3 30 30 H 1.09000 * 113.79281 * 41.40977 * 10 9 7 31 31 H 1.09005 * 113.89518 * 269.95411 * 10 9 7 32 32 H 1.09005 * 113.79373 * 90.05193 * 12 9 7 33 33 H 1.09000 * 113.79571 * 318.58063 * 12 9 7 34 34 H 1.09004 * 109.74758 * 60.33747 * 13 11 10 35 35 H 1.08998 * 109.79079 * 299.63551 * 13 11 10 36 36 H 1.09005 * 109.47068 * 60.00376 * 17 15 14 37 37 H 1.09005 * 109.47647 * 300.00785 * 17 15 14 38 38 H 1.09001 * 109.47263 * 59.99650 * 19 18 17 39 39 H 1.09000 * 109.46943 * 300.00169 * 19 18 17 40 40 H 1.08996 * 110.90766 * 86.28222 * 22 20 19 41 41 H 1.09001 * 110.94010 * 322.68241 * 22 20 19 42 42 H 1.09004 * 110.48564 * 262.20686 * 23 22 20 43 43 H 1.08997 * 110.48807 * 139.56009 * 23 22 20 44 44 H 1.08998 * 109.88273 * 242.60534 * 24 23 22 45 45 H 1.08998 * 110.00322 * 121.52715 * 24 23 22 46 46 H 1.09004 * 109.59313 * 171.72892 * 26 14 13 47 47 H 1.09003 * 109.58745 * 292.17537 * 26 14 13 48 48 H 1.09003 * 109.56746 * 186.07143 * 27 26 14 49 49 H 1.08991 * 109.34333 * 66.03915 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.7212 -3.8108 0.0015 11 6 0.3481 -4.0806 0.6310 12 6 -0.1044 -2.7567 0.0008 13 6 -0.3599 -5.3055 0.0512 14 7 -1.6557 -5.4509 0.7372 15 6 -2.7936 -5.6422 0.0405 16 8 -2.7611 -5.6975 -1.1705 17 6 -4.1060 -5.7884 0.7665 18 8 -5.1567 -5.9806 -0.1827 19 6 -6.4507 -6.1305 0.4048 20 6 -7.4918 -6.3296 -0.6986 21 1 -7.4651 -5.5015 -1.4068 22 6 -8.9093 -6.4822 -0.0903 23 6 -9.6517 -7.2755 -1.1932 24 6 -8.5230 -7.9389 -2.0060 25 8 -7.2795 -7.5861 -1.3772 26 6 -1.6691 -5.3743 2.2064 27 6 -0.9488 -4.1003 2.6441 28 8 0.3554 -4.0650 2.0558 29 1 -0.4850 0.8401 -0.0004 30 1 2.5591 -4.0337 0.6619 31 1 1.8395 -4.2368 -0.9949 32 1 -0.5302 -2.8672 -0.9966 33 1 -0.7169 -2.1423 0.6607 34 1 0.2472 -6.1953 0.2185 35 1 -0.5225 -5.1663 -1.0175 36 1 -4.3018 -4.8877 1.3483 37 1 -4.0581 -6.6488 1.4341 38 1 -6.6951 -5.2365 0.9785 39 1 -6.4515 -6.9975 1.0653 40 1 -9.3722 -5.5080 0.0665 41 1 -8.8749 -7.0489 0.8402 42 1 -10.2305 -6.6010 -1.8242 43 1 -10.2979 -8.0327 -0.7491 44 1 -8.5380 -7.5692 -3.0312 45 1 -8.6468 -9.0218 -2.0008 46 1 -2.6993 -5.3506 2.5619 47 1 -1.1565 -6.2418 2.6222 48 1 -0.8581 -4.0870 3.7303 49 1 -1.5196 -3.2318 2.3157 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673521659.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -119.327710 kcal Electronic energy + Delta-G solvation = -30450.082826 eV Core-core repulsion = 26186.113035 eV Total energy + Delta-G solvation = -4263.969791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.76979 -40.55400 -40.14326 -38.33536 -37.74225 -35.77101 -34.31165 -33.13326 -32.07329 -31.50330 -29.87574 -29.05940 -27.14524 -26.86748 -25.97163 -24.63281 -23.52178 -22.65094 -22.17488 -20.82671 -20.11343 -18.84716 -18.60040 -18.01790 -17.75701 -17.30186 -17.14589 -16.93344 -16.75406 -16.55937 -16.15439 -15.96844 -15.74484 -15.57374 -15.15357 -14.96864 -14.81802 -14.51215 -14.28430 -14.01603 -13.90269 -13.37273 -13.14694 -13.08323 -12.92682 -12.76698 -12.73069 -12.64889 -12.55573 -12.22760 -12.12991 -12.05959 -11.98407 -11.73072 -11.55099 -11.46366 -10.97753 -10.82279 -10.76000 -10.73112 -10.63714 -9.56846 -8.96817 -7.92310 -5.27110 1.42498 1.46801 1.48390 1.53195 1.60982 2.44700 2.64483 2.69962 2.92185 3.24608 3.32447 3.44308 3.61913 3.64676 3.77841 3.90545 3.97323 4.00206 4.07857 4.12960 4.16222 4.22489 4.28052 4.34584 4.40750 4.45943 4.52660 4.58440 4.61280 4.63446 4.69427 4.80432 4.81933 4.86046 4.90436 4.93501 4.95825 5.06161 5.10842 5.20764 5.21336 5.27496 5.43647 5.86807 5.93279 6.07127 6.30877 6.35848 6.86718 7.07548 7.56690 8.49962 9.24187 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016763 B = 0.002287 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.969759 B =12239.871809 C =12984.767742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.984 3.016 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.635 5.635 10 C 0.133 3.867 11 C 0.081 3.919 12 C 0.151 3.849 13 C 0.109 3.891 14 N -0.611 5.611 15 C 0.507 3.493 16 O -0.576 6.576 17 C 0.051 3.949 18 O -0.398 6.398 19 C 0.063 3.937 20 C 0.066 3.934 21 H 0.061 0.939 22 C -0.138 4.138 23 C -0.150 4.150 24 C 0.033 3.967 25 O -0.401 6.401 26 C 0.076 3.924 27 C 0.037 3.963 28 O -0.361 6.361 29 H 0.247 0.753 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.005 0.995 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.130 0.870 47 H 0.108 0.892 48 H 0.138 0.862 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.826 -17.897 8.539 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.812 3.188 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.361 4.361 8 H 0.105 0.895 9 N -0.361 5.361 10 C 0.008 3.992 11 C 0.039 3.961 12 C 0.025 3.975 13 C -0.015 4.015 14 N -0.346 5.346 15 C 0.296 3.704 16 O -0.455 6.455 17 C -0.028 4.028 18 O -0.317 6.317 19 C -0.013 4.013 20 C 0.009 3.991 21 H 0.079 0.921 22 C -0.176 4.176 23 C -0.188 4.188 24 C -0.044 4.044 25 O -0.321 6.321 26 C -0.045 4.045 27 C -0.040 4.040 28 O -0.279 6.279 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.147 0.853 47 H 0.126 0.874 48 H 0.156 0.844 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.385 -17.721 7.811 26.703 hybrid contribution 0.101 1.483 -0.650 1.623 sum -18.284 -16.238 7.160 25.480 Atomic orbital electron populations 1.70034 1.06626 1.25618 1.58302 1.25710 0.96626 1.01144 1.02921 0.85069 0.77075 0.78311 0.78372 1.20312 1.22017 1.19855 1.19407 0.90911 0.83137 1.42683 0.89517 1.46189 1.03054 1.00697 1.86187 1.22718 0.94684 0.83839 0.97935 1.23138 0.97527 0.93001 0.82461 1.22508 0.87573 0.91839 0.95538 1.22007 0.83799 0.97955 0.97759 1.48224 1.06275 1.71621 1.08518 1.21057 0.86149 0.75645 0.87500 1.90704 1.86903 1.51463 1.16383 1.22354 0.84336 1.04783 0.91294 1.88041 1.16163 1.94008 1.33467 1.22852 0.80996 1.02506 0.94961 1.23338 0.94966 0.87118 0.93688 0.92055 1.23107 0.92250 1.02699 0.99502 1.22944 0.97929 1.00504 0.97400 1.23362 0.83323 1.01245 0.96465 1.88968 1.33882 1.38770 1.70457 1.22653 1.04673 0.99505 0.77663 1.23136 0.83960 0.96609 1.00278 1.87892 1.28615 1.94378 1.17012 0.94377 0.91289 0.91375 0.97695 0.93932 0.88074 0.90418 0.87467 0.86367 0.88928 0.90588 0.88052 0.88847 0.89634 0.88539 0.92890 0.88945 0.85253 0.87410 0.84407 0.94910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.48 11.39 21.65 0.25 -60.23 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.98 47.41 29.55 68.60 2.03 49.43 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.23 -13.74 10.70 84.03 0.90 -12.84 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 9 N -0.63 -34.73 3.70 -729.30 -2.70 -37.43 16 10 C 0.13 5.64 8.33 86.30 0.72 6.36 16 11 C 0.08 3.18 1.21 -10.49 -0.01 3.17 16 12 C 0.15 7.83 6.65 86.30 0.57 8.40 16 13 C 0.11 3.59 5.78 86.19 0.50 4.09 16 14 N -0.61 -17.41 3.03 -818.71 -2.48 -19.89 16 15 C 0.51 16.19 7.79 87.65 0.68 16.88 16 16 O -0.58 -25.01 15.99 16.02 0.26 -24.75 16 17 C 0.05 1.09 4.79 71.23 0.34 1.43 16 18 O -0.40 -11.00 9.87 -127.22 -1.26 -12.26 16 19 C 0.06 1.10 5.68 71.98 0.41 1.51 16 20 C 0.07 1.26 3.63 31.28 0.11 1.37 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 C -0.14 -1.43 6.59 31.90 0.21 -1.22 16 23 C -0.15 -1.50 7.01 31.59 0.22 -1.28 16 24 C 0.03 0.53 7.70 72.35 0.56 1.09 16 25 O -0.40 -9.85 11.22 -148.08 -1.66 -11.51 16 26 C 0.08 1.44 6.47 86.18 0.56 1.99 16 27 C 0.04 0.98 6.87 71.90 0.49 1.47 16 28 O -0.36 -13.29 10.52 -148.98 -1.57 -14.85 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.07 2.65 8.09 -2.38 -0.02 2.63 16 32 H 0.01 0.30 7.94 -2.38 -0.02 0.28 16 33 H 0.04 2.45 6.30 -2.39 -0.02 2.44 16 34 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.08 2.99 6.91 -2.39 -0.02 2.97 16 36 H 0.11 1.68 7.68 -2.38 -0.02 1.66 16 37 H 0.12 1.55 8.00 -2.38 -0.02 1.53 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.09 0.73 8.06 -2.39 -0.02 0.72 16 42 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.13 1.36 6.03 -2.39 -0.01 1.35 16 47 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.14 2.62 8.14 -2.39 -0.02 2.61 16 49 H 0.03 1.05 7.19 -2.39 -0.02 1.04 16 Total: -1.00 -89.99 391.34 0.53 -89.46 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.94 Total: 13.40 kcal Atomic # 6 Polarization: 21.90 SS G_CDS: 6.73 Total: 28.63 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -4.94 Total: -117.55 kcal Atomic # 8 Polarization: -59.15 SS G_CDS: -4.23 Total: -63.37 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -89.99 0.53 -89.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673521659.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.866 kcal (2) G-P(sol) polarization free energy of solvation -89.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds