Wall clock time and date at job start Sat Apr 11 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00153 * 2 1 4 4 O 1.21491 * 120.00280 * 181.99222 * 3 2 1 5 5 C 1.48351 * 120.00082 * 2.00373 * 3 2 1 6 6 C 1.40172 * 119.20567 * 172.74054 * 5 3 2 7 7 C 1.36633 * 119.70690 * 179.66646 * 6 5 3 8 8 C 1.40594 * 118.21019 * 0.62666 * 7 6 5 9 9 C 1.40729 * 121.39034 * 179.67465 * 8 7 6 10 10 C 1.36589 * 118.13604 * 179.72675 * 9 8 7 11 11 C 1.39435 * 119.84934 * 0.02562 * 10 9 8 12 12 N 1.31013 * 121.83361 * 0.02562 * 11 10 9 13 13 C 1.33859 * 121.42684 * 359.95565 * 12 11 10 14 14 N 1.31888 * 119.20520 * 352.75743 * 5 3 2 15 15 C 1.46505 * 119.99744 * 180.02562 * 2 1 3 16 16 H 1.09001 * 109.46746 * 179.97438 * 15 2 1 17 17 C 1.52998 * 109.46926 * 299.99508 * 15 2 1 18 18 N 1.46500 * 109.47294 * 305.00596 * 17 15 2 19 19 C 1.36939 * 120.00277 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99565 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00299 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46993 * 90.00332 * 23 21 19 25 25 H 1.48501 * 109.46948 * 210.00195 * 23 21 19 26 26 H 1.48501 * 109.47488 * 330.00094 * 23 21 19 27 27 C 1.52995 * 109.47316 * 59.99574 * 15 2 1 28 28 C 1.53000 * 117.49763 * 128.74448 * 27 15 2 29 29 C 1.53000 * 117.49841 * 60.08668 * 27 15 2 30 30 H 1.09001 * 109.47345 * 83.73940 * 1 2 3 31 31 H 1.08996 * 109.47048 * 203.73778 * 1 2 3 32 32 H 1.09000 * 109.46634 * 323.73638 * 1 2 3 33 33 H 1.07991 * 120.14583 * 359.97438 * 6 5 3 34 34 H 1.08002 * 120.89255 * 180.27991 * 7 6 5 35 35 H 1.08000 * 120.93594 * 359.71128 * 9 8 7 36 36 H 1.07994 * 120.07785 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.07865 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47214 * 64.99965 * 17 15 2 39 39 H 1.08996 * 109.47462 * 185.00246 * 17 15 2 40 40 H 0.97002 * 119.99982 * 359.97438 * 18 17 15 41 41 H 0.97001 * 119.99795 * 180.02562 * 22 21 19 42 42 H 1.08993 * 115.55409 * 274.41655 * 27 15 2 43 43 H 1.08998 * 117.50258 * 0.02562 * 28 27 15 44 44 H 1.09005 * 117.50053 * 145.01883 * 28 27 15 45 45 H 1.09004 * 117.50359 * 214.97903 * 29 27 15 46 46 H 1.09005 * 117.50142 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3533 1.1675 -0.0366 5 6 1.3979 2.4515 0.0449 6 6 2.1117 3.6480 0.1989 7 6 1.4401 4.8373 0.2347 8 6 0.0385 4.8126 0.1274 9 6 -0.7204 5.9972 0.1632 10 6 -2.0776 5.8964 0.0475 11 6 -2.6703 4.6430 -0.1004 12 7 -1.9604 3.5423 -0.1322 13 6 -0.6264 3.5688 -0.0247 14 7 0.0833 2.4401 -0.0607 15 6 2.1975 -1.2688 -0.0006 16 1 3.2691 -1.0696 -0.0009 17 6 1.8279 -2.0715 1.2484 18 7 2.0707 -1.2573 2.4418 19 6 1.8113 -1.7699 3.6849 20 1 1.4274 -2.7744 3.7854 21 6 2.0418 -0.9986 4.8157 22 7 2.5092 0.2256 4.6931 23 14 1.6873 -1.6977 6.5112 24 1 2.9016 -2.3766 7.0306 25 1 1.3045 -0.5962 7.4307 26 1 0.5738 -2.6761 6.4205 27 6 1.8278 -2.0706 -1.2501 28 6 2.9740 -2.6051 -2.1112 29 6 2.1226 -1.4349 -2.6102 30 1 -0.3634 0.1121 -1.0215 31 1 -0.3633 -0.9407 0.4137 32 1 -0.3632 0.8286 0.6079 33 1 3.1881 3.6302 0.2839 34 1 1.9713 5.7709 0.3481 35 1 -0.2431 6.9591 0.2791 36 1 -2.6903 6.7854 0.0705 37 1 -3.7445 4.5777 -0.1912 38 1 0.7742 -2.3469 1.2047 39 1 2.4376 -2.9739 1.2940 40 1 2.4158 -0.3553 2.3516 41 1 2.6706 0.7645 5.4834 42 1 0.9323 -2.6861 -1.1658 43 1 3.9914 -2.3859 -1.7873 44 1 2.8323 -3.5722 -2.5937 45 1 1.4212 -1.6326 -3.4208 46 1 2.5804 -0.4457 -2.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676216157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:33 Heat of formation + Delta-G solvation = 104.817908 kcal Electronic energy + Delta-G solvation = -29763.252597 eV Core-core repulsion = 25848.604160 eV Total energy + Delta-G solvation = -3914.648437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39043 -39.84094 -37.98532 -37.02300 -35.18862 -34.39072 -33.73116 -31.56192 -31.07817 -30.79061 -28.29439 -26.49677 -25.52811 -24.42289 -23.86503 -22.70907 -22.26050 -21.53286 -21.03365 -19.28528 -18.68522 -17.72486 -17.20472 -17.11694 -16.25204 -15.91430 -15.53569 -15.14128 -14.90485 -14.71513 -14.43911 -14.33805 -14.01542 -13.76974 -13.38986 -13.29839 -13.13154 -12.90874 -12.45394 -12.23236 -12.12702 -11.88698 -11.82635 -11.45989 -11.38325 -11.19749 -10.89181 -10.81802 -10.65934 -10.39640 -10.20840 -10.17369 -9.92727 -9.71597 -9.61983 -9.06834 -9.02778 -8.82094 -8.79887 -8.12267 -6.84409 -5.68499 -2.97271 -0.04035 0.39828 1.73953 2.36500 3.09496 3.33956 3.47531 3.52015 3.53897 3.56919 4.04473 4.11105 4.24594 4.43195 4.48148 4.57280 4.60326 4.69627 4.83122 4.88892 5.10303 5.13221 5.16917 5.18115 5.49433 5.50446 5.61848 5.64516 5.70210 5.75936 5.78082 5.88519 5.97280 5.98770 6.02745 6.05782 6.20584 6.27018 6.29204 6.39352 6.43792 6.60511 6.67177 6.82001 7.06348 7.21844 7.74337 7.75907 7.96248 8.46175 8.49091 9.60576 10.19030 10.54359 11.53974 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.004329 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.927605 B = 6466.002283 C = 8549.614641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.563 5.563 3 C 0.566 3.434 4 O -0.533 6.533 5 C 0.159 3.841 6 C -0.122 4.122 7 C -0.051 4.051 8 C -0.144 4.144 9 C -0.045 4.045 10 C -0.179 4.179 11 C 0.154 3.846 12 N -0.457 5.457 13 C 0.296 3.704 14 N -0.422 5.422 15 C 0.159 3.841 16 H 0.102 0.898 17 C 0.148 3.852 18 N -0.728 5.728 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.282 1.282 27 C -0.157 4.157 28 C -0.170 4.170 29 C -0.171 4.171 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.157 0.843 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.024 0.976 39 H 0.032 0.968 40 H 0.385 0.615 41 H 0.253 0.747 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 11.105 -15.651 20.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.293 5.293 3 C 0.352 3.648 4 O -0.409 6.409 5 C 0.002 3.998 6 C -0.143 4.143 7 C -0.077 4.077 8 C -0.149 4.149 9 C -0.072 4.072 10 C -0.199 4.199 11 C -0.023 4.023 12 N -0.165 5.165 13 C 0.058 3.942 14 N -0.135 5.135 15 C 0.056 3.944 16 H 0.120 0.880 17 C 0.019 3.981 18 N -0.372 5.372 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.176 4.176 28 C -0.208 4.208 29 C -0.209 4.209 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.041 0.959 39 H 0.050 0.950 40 H 0.219 0.781 41 H 0.063 0.937 42 H 0.126 0.874 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.550 9.299 -15.725 19.768 hybrid contribution 0.540 1.563 1.340 2.129 sum -7.010 10.863 -14.385 19.341 Atomic orbital electron populations 1.22265 0.77930 1.03869 1.01777 1.47548 1.08057 1.04668 1.68979 1.17785 0.86485 0.82842 0.77693 1.90771 1.12541 1.86457 1.51162 1.21571 0.88955 0.94883 0.94384 1.21859 1.02998 0.91361 0.98045 1.21428 0.92127 0.99101 0.95093 1.19731 0.95709 0.95814 1.03661 1.21480 0.94099 0.97486 0.94145 1.22010 0.95697 0.99742 1.02407 1.23100 1.00489 0.87050 0.91653 1.67624 1.05071 1.31383 1.12465 1.19460 0.90488 0.87557 0.96694 1.68175 1.06455 1.27153 1.11751 1.21043 0.97779 0.82209 0.93411 0.88020 1.20954 0.97866 0.93526 0.85745 1.42279 1.78802 1.15758 1.00362 1.19209 1.36020 0.97986 0.83633 0.91220 1.24727 1.02187 0.96290 0.97714 1.69689 1.51260 1.08750 1.28216 0.86208 0.77802 0.77638 0.84658 1.21756 1.21911 1.20800 1.22564 1.00522 1.02969 0.91562 1.22975 0.96311 0.98025 1.03480 1.22818 1.03376 0.97824 0.96850 0.93102 0.91845 0.87754 0.82567 0.83401 0.84005 0.84021 0.81643 0.95879 0.95048 0.78086 0.93681 0.87448 0.88583 0.88827 0.89138 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 8.62 59.85 0.52 1.97 16 2 N -0.56 -10.43 2.12 -174.86 -0.37 -10.80 16 3 C 0.57 11.08 7.37 -12.10 -0.09 10.99 16 4 O -0.53 -11.46 15.63 5.37 0.08 -11.38 16 5 C 0.16 2.77 6.63 -82.95 -0.55 2.22 16 6 C -0.12 -1.78 9.54 -39.44 -0.38 -2.16 16 7 C -0.05 -0.59 9.89 -39.27 -0.39 -0.98 16 8 C -0.14 -1.80 5.75 -106.68 -0.61 -2.41 16 9 C -0.05 -0.40 9.90 -39.24 -0.39 -0.78 16 10 C -0.18 -1.36 10.04 -39.73 -0.40 -1.76 16 11 C 0.15 1.49 11.14 -17.46 -0.19 1.30 16 12 N -0.46 -6.50 10.43 -12.59 -0.13 -6.63 16 13 C 0.30 4.57 7.62 -157.91 -1.20 3.37 16 14 N -0.42 -7.23 6.04 -9.19 -0.06 -7.29 16 15 C 0.16 2.89 2.37 -67.93 -0.16 2.73 16 16 H 0.10 2.06 6.66 -51.93 -0.35 1.71 16 17 C 0.15 3.12 5.51 -4.04 -0.02 3.10 16 18 N -0.73 -19.43 5.43 -59.91 -0.33 -19.75 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.30 13.06 55.49 0.72 -28.58 16 23 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 27 C -0.16 -2.25 4.83 -90.62 -0.44 -2.69 16 28 C -0.17 -2.14 10.18 -26.69 -0.27 -2.42 16 29 C -0.17 -2.23 10.13 -26.69 -0.27 -2.50 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.09 6.54 -51.93 -0.34 0.75 16 32 H 0.10 2.00 5.27 -52.23 -0.28 1.72 16 33 H 0.16 2.16 7.62 -52.49 -0.40 1.76 16 34 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.02 0.48 6.87 -51.93 -0.36 0.13 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.39 11.12 7.07 -40.82 -0.29 10.84 16 41 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.11 1.45 8.11 -51.93 -0.42 1.02 16 43 H 0.10 1.26 8.05 -51.93 -0.42 0.84 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 383.85 15.07 5.78 5.78 Total: -1.00 -36.02 383.85 -10.61 -46.63 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -6.20 Total: 11.45 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -5.10 Total: 2.44 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -0.16 Total: -73.05 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.02 -10.61 -46.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676216157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.447 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds