Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00153 * 2 1 4 4 O 1.21491 * 120.00280 * 181.99222 * 3 2 1 5 5 C 1.48351 * 120.00082 * 2.00373 * 3 2 1 6 6 C 1.40172 * 119.20567 * 172.74054 * 5 3 2 7 7 C 1.36633 * 119.70690 * 179.66646 * 6 5 3 8 8 C 1.40594 * 118.21019 * 0.62666 * 7 6 5 9 9 C 1.40729 * 121.39034 * 179.67465 * 8 7 6 10 10 C 1.36589 * 118.13604 * 179.72675 * 9 8 7 11 11 C 1.39435 * 119.84934 * 0.02562 * 10 9 8 12 12 N 1.31013 * 121.83361 * 0.02562 * 11 10 9 13 13 C 1.33859 * 121.42684 * 359.95565 * 12 11 10 14 14 N 1.31888 * 119.20520 * 352.75743 * 5 3 2 15 15 C 1.46505 * 119.99744 * 180.02562 * 2 1 3 16 16 H 1.09001 * 109.46746 * 179.97438 * 15 2 1 17 17 C 1.52998 * 109.46926 * 299.99508 * 15 2 1 18 18 N 1.46500 * 109.47294 * 305.00596 * 17 15 2 19 19 C 1.36939 * 120.00277 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99565 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00299 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99868 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46993 * 90.00332 * 23 21 19 25 25 H 1.48501 * 109.46948 * 210.00195 * 23 21 19 26 26 H 1.48501 * 109.47488 * 330.00094 * 23 21 19 27 27 C 1.52995 * 109.47316 * 59.99574 * 15 2 1 28 28 C 1.53000 * 117.49763 * 128.74448 * 27 15 2 29 29 C 1.53000 * 117.49841 * 60.08668 * 27 15 2 30 30 H 1.09001 * 109.47345 * 83.73940 * 1 2 3 31 31 H 1.08996 * 109.47048 * 203.73778 * 1 2 3 32 32 H 1.09000 * 109.46634 * 323.73638 * 1 2 3 33 33 H 1.07991 * 120.14583 * 359.97438 * 6 5 3 34 34 H 1.08002 * 120.89255 * 180.27991 * 7 6 5 35 35 H 1.08000 * 120.93594 * 359.71128 * 9 8 7 36 36 H 1.07994 * 120.07785 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.07865 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47214 * 64.99965 * 17 15 2 39 39 H 1.08996 * 109.47462 * 185.00246 * 17 15 2 40 40 H 0.97002 * 119.99982 * 359.97438 * 18 17 15 41 41 H 0.97001 * 119.99795 * 180.02562 * 22 21 19 42 42 H 1.08993 * 115.55409 * 274.41655 * 27 15 2 43 43 H 1.08998 * 117.50258 * 0.02562 * 28 27 15 44 44 H 1.09005 * 117.50053 * 145.01883 * 28 27 15 45 45 H 1.09004 * 117.50359 * 214.97903 * 29 27 15 46 46 H 1.09005 * 117.50142 * 0.02562 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3533 1.1675 -0.0366 5 6 1.3979 2.4515 0.0449 6 6 2.1117 3.6480 0.1989 7 6 1.4401 4.8373 0.2347 8 6 0.0385 4.8126 0.1274 9 6 -0.7204 5.9972 0.1632 10 6 -2.0776 5.8964 0.0475 11 6 -2.6703 4.6430 -0.1004 12 7 -1.9604 3.5423 -0.1322 13 6 -0.6264 3.5688 -0.0247 14 7 0.0833 2.4401 -0.0607 15 6 2.1975 -1.2688 -0.0006 16 1 3.2691 -1.0696 -0.0009 17 6 1.8279 -2.0715 1.2484 18 7 2.0707 -1.2573 2.4418 19 6 1.8113 -1.7699 3.6849 20 1 1.4274 -2.7744 3.7854 21 6 2.0418 -0.9986 4.8157 22 7 2.5092 0.2256 4.6931 23 14 1.6873 -1.6977 6.5112 24 1 2.9016 -2.3766 7.0306 25 1 1.3045 -0.5962 7.4307 26 1 0.5738 -2.6761 6.4205 27 6 1.8278 -2.0706 -1.2501 28 6 2.9740 -2.6051 -2.1112 29 6 2.1226 -1.4349 -2.6102 30 1 -0.3634 0.1121 -1.0215 31 1 -0.3633 -0.9407 0.4137 32 1 -0.3632 0.8286 0.6079 33 1 3.1881 3.6302 0.2839 34 1 1.9713 5.7709 0.3481 35 1 -0.2431 6.9591 0.2791 36 1 -2.6903 6.7854 0.0705 37 1 -3.7445 4.5777 -0.1912 38 1 0.7742 -2.3469 1.2047 39 1 2.4376 -2.9739 1.2940 40 1 2.4158 -0.3553 2.3516 41 1 2.6706 0.7645 5.4834 42 1 0.9323 -2.6861 -1.1658 43 1 3.9914 -2.3859 -1.7873 44 1 2.8323 -3.5722 -2.5937 45 1 1.4212 -1.6326 -3.4208 46 1 2.5804 -0.4457 -2.6148 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676216157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = 82.039153 kcal Electronic energy + Delta-G solvation = -29764.240358 eV Core-core repulsion = 25848.604160 eV Total energy + Delta-G solvation = -3915.636198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40529 -41.15732 -39.10133 -38.26085 -36.70377 -35.89062 -35.01312 -33.30432 -32.12297 -31.96112 -29.99773 -27.90168 -26.79365 -25.86050 -25.23003 -23.62704 -23.45099 -23.08417 -22.23156 -20.64779 -19.70118 -19.21792 -18.91942 -18.16437 -17.50659 -17.12539 -16.94293 -16.66365 -16.18823 -15.82243 -15.69339 -15.51925 -15.25791 -15.12292 -14.95900 -14.68270 -14.55944 -13.99151 -13.95767 -13.55887 -13.40022 -13.21693 -13.10852 -12.81942 -12.80279 -12.68075 -12.42852 -12.24565 -12.12224 -12.10434 -11.84496 -11.70255 -11.29163 -11.18718 -10.99896 -10.89848 -10.08202 -9.95046 -9.84386 -9.56920 -9.03719 -7.96045 -5.26495 -0.97961 -0.53105 0.85189 1.30022 1.42620 1.45945 1.54024 1.76580 2.14902 2.51454 2.54344 2.97082 3.06597 3.32877 3.36746 3.39447 3.51821 3.63928 3.75577 3.91651 3.94450 4.03099 4.08202 4.11404 4.22839 4.25218 4.39751 4.45890 4.47401 4.54145 4.65927 4.75262 4.79616 4.82134 4.89070 4.94186 4.99881 5.03156 5.13998 5.14784 5.24540 5.26296 5.30934 5.44587 5.54875 5.67057 6.16982 6.23189 6.32070 6.93680 7.09853 7.29428 8.03920 8.28520 9.27486 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.004329 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.927605 B = 6466.002283 C = 8549.614641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.564 5.564 3 C 0.556 3.444 4 O -0.569 6.569 5 C 0.125 3.875 6 C -0.149 4.149 7 C -0.028 4.028 8 C -0.155 4.155 9 C -0.043 4.043 10 C -0.161 4.161 11 C 0.158 3.842 12 N -0.505 5.505 13 C 0.263 3.737 14 N -0.444 5.444 15 C 0.166 3.834 16 H 0.074 0.926 17 C 0.147 3.853 18 N -0.742 5.742 19 C -0.244 4.244 20 H 0.080 0.920 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.977 3.023 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.267 1.267 27 C -0.167 4.167 28 C -0.156 4.156 29 C -0.163 4.163 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.152 0.848 34 H 0.195 0.805 35 H 0.186 0.814 36 H 0.191 0.809 37 H 0.201 0.799 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 12.706 -16.283 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.293 5.293 3 C 0.343 3.657 4 O -0.448 6.448 5 C -0.030 4.030 6 C -0.170 4.170 7 C -0.054 4.054 8 C -0.161 4.161 9 C -0.069 4.069 10 C -0.180 4.180 11 C -0.018 4.018 12 N -0.215 5.215 13 C 0.026 3.974 14 N -0.158 5.158 15 C 0.063 3.937 16 H 0.092 0.908 17 C 0.020 3.980 18 N -0.384 5.384 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.191 1.191 27 C -0.186 4.186 28 C -0.194 4.194 29 C -0.200 4.200 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.170 0.830 34 H 0.212 0.788 35 H 0.203 0.797 36 H 0.208 0.792 37 H 0.218 0.782 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.142 0.858 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.134 0.866 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.919 10.845 -16.391 22.015 hybrid contribution 1.076 1.216 1.477 2.195 sum -8.843 12.061 -14.914 21.121 Atomic orbital electron populations 1.22149 0.77239 1.02831 1.02301 1.47643 1.08422 1.04632 1.68595 1.18297 0.86422 0.84010 0.76931 1.90712 1.13959 1.87194 1.52958 1.21320 0.89562 0.94549 0.97560 1.21912 1.02923 0.91893 1.00284 1.21914 0.92074 0.99487 0.91923 1.20057 0.96290 0.96328 1.03380 1.22004 0.94524 0.97563 0.92777 1.22550 0.95775 1.00406 0.99317 1.23922 1.01965 0.87038 0.88907 1.67617 1.04845 1.33999 1.15074 1.19759 0.91317 0.88262 0.98106 1.67929 1.06274 1.29108 1.12519 1.20867 0.96278 0.82418 0.94158 0.90773 1.21117 0.98279 0.93403 0.85176 1.42494 1.78753 1.15616 1.01551 1.19666 1.34934 0.98278 0.84725 0.90260 1.25630 1.02752 0.96704 1.01817 1.69886 1.53056 1.10304 1.28907 0.85082 0.77987 0.76922 0.79414 1.21267 1.22304 1.19123 1.22441 1.02200 1.03629 0.90318 1.23077 0.95134 0.99126 1.02032 1.22813 1.03694 0.97045 0.96452 0.91591 0.92074 0.89560 0.83044 0.78785 0.79693 0.79177 0.78233 0.94854 0.94482 0.79874 0.94227 0.85825 0.89639 0.85846 0.86625 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.55 8.62 127.77 1.10 4.66 16 2 N -0.56 -22.46 2.12 -825.44 -1.75 -24.21 16 3 C 0.56 23.89 7.37 86.94 0.64 24.53 16 4 O -0.57 -27.04 15.63 -3.69 -0.06 -27.10 16 5 C 0.12 4.74 6.63 42.30 0.28 5.03 16 6 C -0.15 -4.67 9.54 22.36 0.21 -4.45 16 7 C -0.03 -0.62 9.89 22.47 0.22 -0.40 16 8 C -0.16 -3.67 5.75 -21.20 -0.12 -3.79 16 9 C -0.04 -0.56 9.90 22.49 0.22 -0.34 16 10 C -0.16 -1.69 10.04 22.17 0.22 -1.46 16 11 C 0.16 2.60 11.14 85.10 0.95 3.55 16 12 N -0.51 -14.22 10.43 -193.76 -2.02 -16.24 16 13 C 0.26 8.30 7.62 135.12 1.03 9.33 16 14 N -0.44 -16.31 6.04 -182.97 -1.11 -17.41 16 15 C 0.17 6.39 2.37 44.99 0.11 6.50 16 16 H 0.07 3.26 6.66 -2.39 -0.02 3.24 16 17 C 0.15 6.45 5.51 86.38 0.48 6.92 16 18 N -0.74 -41.37 5.43 -343.46 -1.87 -43.23 16 19 C -0.24 -14.50 9.99 84.03 0.84 -13.66 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 21 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 22 N -0.97 -63.48 13.06 21.65 0.28 -63.20 16 23 Si 0.98 48.40 29.55 68.60 2.03 50.43 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C -0.17 -4.79 4.83 -10.80 -0.05 -4.85 16 28 C -0.16 -3.81 10.18 30.62 0.31 -3.49 16 29 C -0.16 -4.20 10.13 30.62 0.31 -3.89 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.06 2.19 6.54 -2.39 -0.02 2.18 16 32 H 0.09 3.57 5.27 -2.99 -0.02 3.56 16 33 H 0.15 4.66 7.62 -2.92 -0.02 4.64 16 34 H 0.20 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 37 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.03 1.41 6.87 -2.39 -0.02 1.39 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.37 22.74 7.07 -92.71 -0.66 22.08 16 41 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 42 H 0.12 3.18 8.11 -2.39 -0.02 3.16 16 43 H 0.09 2.28 8.05 -2.39 -0.02 2.26 16 44 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -85.64 383.85 3.08 -82.56 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.36 Total: 38.45 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 7.22 Total: 19.96 kcal Atomic # 7 Polarization: -157.83 SS G_CDS: -6.46 Total: -164.29 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 48.40 SS G_CDS: 2.03 Total: 50.43 kcal Total: -85.64 3.08 -82.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676216157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.595 kcal (2) G-P(sol) polarization free energy of solvation -85.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds