Wall clock time and date at job start Sat Apr 11 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00096 * 2 1 4 4 O 1.21489 * 119.99997 * 174.74832 * 3 2 1 5 5 C 1.48359 * 119.99913 * 354.75577 * 3 2 1 6 6 C 1.40165 * 119.20265 * 185.02764 * 5 3 2 7 7 C 1.36622 * 119.70732 * 179.97438 * 6 5 3 8 8 C 1.40600 * 118.20752 * 0.02562 * 7 6 5 9 9 C 1.40734 * 121.37926 * 179.97438 * 8 7 6 10 10 C 1.36578 * 118.13276 * 180.02562 * 9 8 7 11 11 C 1.39431 * 119.84879 * 0.02562 * 10 9 8 12 12 N 1.31014 * 121.83819 * 0.02562 * 11 10 9 13 13 C 1.33864 * 121.42621 * 359.95355 * 12 11 10 14 14 N 1.31879 * 119.19872 * 4.75576 * 5 3 2 15 15 C 1.46504 * 120.00107 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.46953 * 175.03329 * 15 2 1 17 17 C 1.52999 * 109.47250 * 55.02932 * 15 2 1 18 18 N 1.46497 * 109.47049 * 55.00013 * 17 15 2 19 19 C 1.36936 * 120.00128 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99737 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00357 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99628 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00141 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46972 * 90.00008 * 23 21 19 25 25 H 1.48500 * 109.47025 * 209.99874 * 23 21 19 26 26 H 1.48500 * 109.47198 * 329.99818 * 23 21 19 27 27 C 1.52997 * 109.46998 * 295.02968 * 15 2 1 28 28 C 1.53009 * 117.49924 * 253.58829 * 27 15 2 29 29 C 1.52997 * 117.50023 * 184.93000 * 27 15 2 30 30 H 1.08999 * 109.47239 * 184.91230 * 1 2 3 31 31 H 1.09004 * 109.47041 * 304.91043 * 1 2 3 32 32 H 1.08997 * 109.47249 * 64.90875 * 1 2 3 33 33 H 1.08005 * 120.14827 * 359.95798 * 6 5 3 34 34 H 1.07997 * 120.89752 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.93101 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.07516 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.07942 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46798 * 295.00168 * 17 15 2 39 39 H 1.08999 * 109.46888 * 175.00171 * 17 15 2 40 40 H 0.96998 * 120.00291 * 359.72337 * 18 17 15 41 41 H 0.97005 * 119.99432 * 179.97438 * 22 21 19 42 42 H 1.09003 * 115.55208 * 39.25453 * 27 15 2 43 43 H 1.09000 * 117.49334 * 359.97438 * 28 27 15 44 44 H 1.08999 * 117.49766 * 145.02260 * 28 27 15 45 45 H 1.09001 * 117.49613 * 214.98085 * 29 27 15 46 46 H 1.09003 * 117.49807 * 359.97235 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1694 0.0963 5 6 1.4017 2.4493 -0.1174 6 6 2.1237 3.6461 -0.2226 7 6 1.4554 4.8327 -0.3318 8 6 0.0496 4.8059 -0.3338 9 6 -0.7057 5.9884 -0.4423 10 6 -2.0676 5.8854 -0.4368 11 6 -2.6683 4.6322 -0.3250 12 7 -1.9617 3.5336 -0.2232 13 6 -0.6233 3.5622 -0.2224 14 7 0.0830 2.4349 -0.1257 15 6 2.1975 -1.2687 -0.0006 16 1 3.2658 -1.0714 -0.0894 17 6 1.7365 -2.1233 -1.1830 18 7 1.8878 -1.3609 -2.4248 19 6 1.5357 -1.9251 -3.6218 20 1 1.1469 -2.9324 -3.6504 21 6 1.6795 -1.2030 -4.7985 22 7 2.1538 0.0243 -4.7636 23 14 1.1999 -1.9730 -6.4315 24 1 -0.2274 -1.6787 -6.7173 25 1 2.0476 -1.4092 -7.5125 26 1 1.3981 -3.4431 -6.3628 27 6 1.9240 -2.0161 1.3061 28 6 3.0469 -2.0576 2.3447 29 6 2.6917 -3.3168 1.5501 30 1 -0.3634 -1.0239 0.0880 31 1 -0.3633 0.5881 0.8428 32 1 -0.3633 0.4358 -0.9307 33 1 3.2037 3.6304 -0.2172 34 1 1.9923 5.7661 -0.4136 35 1 -0.2219 6.9503 -0.5276 36 1 -2.6778 6.7728 -0.5188 37 1 -3.7462 4.5652 -0.3215 38 1 0.6895 -2.3949 -1.0486 39 1 2.3426 -3.0277 -1.2357 40 1 2.2332 -0.4549 -2.3987 41 1 2.2546 0.5288 -5.5860 42 1 0.8996 -1.9596 1.6745 43 1 3.9805 -1.5528 2.0967 44 1 2.7612 -2.0289 3.3961 45 1 2.1725 -4.1160 2.0791 46 1 3.3914 -3.6404 0.7794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676216158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:39 Heat of formation + Delta-G solvation = 101.818001 kcal Electronic energy + Delta-G solvation = -29669.496426 eV Core-core repulsion = 25754.717903 eV Total energy + Delta-G solvation = -3914.778523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.35599 -39.81368 -37.99247 -37.07529 -35.22735 -34.33782 -33.76208 -31.50945 -31.05942 -30.77690 -28.22246 -26.51637 -25.52607 -24.43069 -23.88026 -22.69097 -22.35641 -21.50462 -20.97343 -19.21795 -18.67499 -17.75268 -17.20185 -17.06905 -16.38116 -15.94345 -15.51350 -15.09020 -14.75212 -14.66722 -14.49622 -14.29405 -13.91786 -13.79204 -13.36407 -13.27477 -13.14655 -12.94759 -12.40584 -12.19522 -12.09306 -12.03298 -11.78626 -11.45141 -11.37646 -11.19102 -11.00488 -10.78653 -10.68580 -10.47583 -10.27789 -10.09821 -9.82039 -9.73843 -9.58977 -9.05278 -8.99866 -8.91068 -8.81871 -8.14351 -6.84882 -5.68998 -2.97692 -0.01863 0.41054 1.76327 2.36879 3.11521 3.33822 3.47378 3.51906 3.53912 3.59396 4.01472 4.10518 4.25988 4.44154 4.48910 4.58605 4.62458 4.69769 4.86740 4.90576 5.11590 5.14625 5.18677 5.18814 5.50647 5.52318 5.61958 5.65108 5.70827 5.73937 5.79713 5.85887 5.93212 5.99188 6.04083 6.06293 6.22346 6.29838 6.31049 6.38890 6.44351 6.56896 6.64676 6.81060 7.02960 7.24801 7.72252 7.75392 7.99145 8.44105 8.48545 9.60057 10.18273 10.53400 11.53541 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.004339 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.106854 B = 6451.745902 C = 8610.424334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.567 5.567 3 C 0.569 3.431 4 O -0.534 6.534 5 C 0.158 3.842 6 C -0.123 4.123 7 C -0.052 4.052 8 C -0.144 4.144 9 C -0.046 4.046 10 C -0.178 4.178 11 C 0.154 3.846 12 N -0.456 5.456 13 C 0.298 3.702 14 N -0.422 5.422 15 C 0.161 3.839 16 H 0.101 0.899 17 C 0.148 3.852 18 N -0.728 5.728 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.158 4.158 28 C -0.178 4.178 29 C -0.170 4.170 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.024 0.976 39 H 0.032 0.968 40 H 0.384 0.616 41 H 0.253 0.747 42 H 0.106 0.894 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 11.272 15.183 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.297 5.297 3 C 0.354 3.646 4 O -0.410 6.410 5 C 0.000 4.000 6 C -0.144 4.144 7 C -0.078 4.078 8 C -0.149 4.149 9 C -0.073 4.073 10 C -0.198 4.198 11 C -0.023 4.023 12 N -0.164 5.164 13 C 0.060 3.940 14 N -0.135 5.135 15 C 0.057 3.943 16 H 0.119 0.881 17 C 0.020 3.980 18 N -0.372 5.372 19 C -0.368 4.368 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.207 1.207 27 C -0.177 4.177 28 C -0.215 4.215 29 C -0.207 4.207 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.174 0.826 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.184 0.816 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.218 0.782 41 H 0.063 0.937 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.233 9.447 15.238 18.982 hybrid contribution 0.442 1.593 -1.294 2.099 sum -5.791 11.040 13.944 18.705 Atomic orbital electron populations 1.21893 0.77749 1.01033 1.03225 1.47536 1.08058 1.04772 1.69293 1.17770 0.86384 0.82849 0.77585 1.90753 1.12850 1.86483 1.50935 1.21505 0.89002 0.94754 0.94696 1.21846 1.02900 0.91419 0.98205 1.21413 0.92147 0.99081 0.95198 1.19738 0.95661 0.95849 1.03668 1.21473 0.94127 0.97481 0.94201 1.22009 0.95630 0.99737 1.02423 1.23103 1.00589 0.87048 0.91581 1.67627 1.05235 1.31357 1.12202 1.19389 0.90365 0.87458 0.96765 1.68102 1.06767 1.27887 1.10708 1.21027 0.97924 0.82278 0.93041 0.88123 1.20943 0.97973 0.93551 0.85526 1.42280 1.78124 1.16022 1.00775 1.19204 1.35147 0.97890 0.84541 0.91209 1.24725 1.02130 0.96366 0.97684 1.69688 1.51650 1.10049 1.26586 0.86210 0.77753 0.78284 0.84073 1.21838 1.21865 1.20750 1.22542 0.97375 1.00667 0.97155 1.23001 0.99951 1.01878 0.96631 1.22914 1.03559 0.91063 1.03190 0.91934 0.91453 0.90734 0.82638 0.83440 0.84020 0.84023 0.81644 0.95831 0.95054 0.78195 0.93686 0.87636 0.88593 0.89247 0.88850 0.88353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 7.99 59.84 0.48 2.28 16 2 N -0.57 -10.56 2.20 -174.86 -0.38 -10.94 16 3 C 0.57 11.10 7.65 -12.09 -0.09 11.01 16 4 O -0.53 -11.31 15.65 5.38 0.08 -11.23 16 5 C 0.16 2.76 6.69 -82.96 -0.55 2.21 16 6 C -0.12 -1.78 9.54 -39.44 -0.38 -2.16 16 7 C -0.05 -0.60 9.89 -39.27 -0.39 -0.99 16 8 C -0.14 -1.82 5.75 -106.68 -0.61 -2.44 16 9 C -0.05 -0.41 9.90 -39.24 -0.39 -0.80 16 10 C -0.18 -1.40 10.04 -39.74 -0.40 -1.80 16 11 C 0.15 1.54 11.14 -17.46 -0.19 1.35 16 12 N -0.46 -6.68 10.43 -12.59 -0.13 -6.81 16 13 C 0.30 4.71 7.62 -157.90 -1.20 3.51 16 14 N -0.42 -7.38 5.97 -9.19 -0.05 -7.43 16 15 C 0.16 2.93 2.30 -67.93 -0.16 2.77 16 16 H 0.10 2.04 6.74 -51.93 -0.35 1.69 16 17 C 0.15 3.12 5.28 -4.04 -0.02 3.10 16 18 N -0.73 -19.33 5.44 -59.91 -0.33 -19.65 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.32 13.06 55.49 0.72 -28.60 16 23 Si 0.91 23.14 29.55 -169.99 -5.02 18.11 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 26 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 27 C -0.16 -2.28 5.09 -90.62 -0.46 -2.75 16 28 C -0.18 -2.29 10.18 -26.69 -0.27 -2.57 16 29 C -0.17 -2.14 9.89 -26.70 -0.26 -2.41 16 30 H 0.06 1.00 6.38 -51.93 -0.33 0.67 16 31 H 0.07 1.09 6.92 -51.93 -0.36 0.73 16 32 H 0.07 1.51 7.19 -51.93 -0.37 1.14 16 33 H 0.16 2.10 7.61 -52.48 -0.40 1.70 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.02 0.49 7.07 -51.93 -0.37 0.13 16 39 H 0.03 0.66 7.81 -51.93 -0.41 0.25 16 40 H 0.38 11.06 7.32 -40.82 -0.30 10.76 16 41 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.11 1.44 7.41 -51.93 -0.38 1.06 16 43 H 0.10 1.33 8.08 -51.93 -0.42 0.91 16 44 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 1.29 7.98 -51.93 -0.41 0.88 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -36.10 383.21 -10.67 -46.77 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -6.19 Total: 11.17 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -5.15 Total: 2.83 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: -0.17 Total: -73.44 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.10 -10.67 -46.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676216158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.590 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds