Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 120.00096 * 2 1 4 4 O 1.21489 * 119.99997 * 174.74832 * 3 2 1 5 5 C 1.48359 * 119.99913 * 354.75577 * 3 2 1 6 6 C 1.40165 * 119.20265 * 185.02764 * 5 3 2 7 7 C 1.36622 * 119.70732 * 179.97438 * 6 5 3 8 8 C 1.40600 * 118.20752 * 0.02562 * 7 6 5 9 9 C 1.40734 * 121.37926 * 179.97438 * 8 7 6 10 10 C 1.36578 * 118.13276 * 180.02562 * 9 8 7 11 11 C 1.39431 * 119.84879 * 0.02562 * 10 9 8 12 12 N 1.31014 * 121.83819 * 0.02562 * 11 10 9 13 13 C 1.33864 * 121.42621 * 359.95355 * 12 11 10 14 14 N 1.31879 * 119.19872 * 4.75576 * 5 3 2 15 15 C 1.46504 * 120.00107 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.46953 * 175.03329 * 15 2 1 17 17 C 1.52999 * 109.47250 * 55.02932 * 15 2 1 18 18 N 1.46497 * 109.47049 * 55.00013 * 17 15 2 19 19 C 1.36936 * 120.00128 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99737 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00357 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99628 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00141 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46972 * 90.00008 * 23 21 19 25 25 H 1.48500 * 109.47025 * 209.99874 * 23 21 19 26 26 H 1.48500 * 109.47198 * 329.99818 * 23 21 19 27 27 C 1.52997 * 109.46998 * 295.02968 * 15 2 1 28 28 C 1.53009 * 117.49924 * 253.58829 * 27 15 2 29 29 C 1.52997 * 117.50023 * 184.93000 * 27 15 2 30 30 H 1.08999 * 109.47239 * 184.91230 * 1 2 3 31 31 H 1.09004 * 109.47041 * 304.91043 * 1 2 3 32 32 H 1.08997 * 109.47249 * 64.90875 * 1 2 3 33 33 H 1.08005 * 120.14827 * 359.95798 * 6 5 3 34 34 H 1.07997 * 120.89752 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.93101 * 0.02562 * 9 8 7 36 36 H 1.08001 * 120.07516 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.07942 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.46798 * 295.00168 * 17 15 2 39 39 H 1.08999 * 109.46888 * 175.00171 * 17 15 2 40 40 H 0.96998 * 120.00291 * 359.72337 * 18 17 15 41 41 H 0.97005 * 119.99432 * 179.97438 * 22 21 19 42 42 H 1.09003 * 115.55208 * 39.25453 * 27 15 2 43 43 H 1.09000 * 117.49334 * 359.97438 * 28 27 15 44 44 H 1.08999 * 117.49766 * 145.02260 * 28 27 15 45 45 H 1.09001 * 117.49613 * 214.98085 * 29 27 15 46 46 H 1.09003 * 117.49807 * 359.97235 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1694 0.0963 5 6 1.4017 2.4493 -0.1174 6 6 2.1237 3.6461 -0.2226 7 6 1.4554 4.8327 -0.3318 8 6 0.0496 4.8059 -0.3338 9 6 -0.7057 5.9884 -0.4423 10 6 -2.0676 5.8854 -0.4368 11 6 -2.6683 4.6322 -0.3250 12 7 -1.9617 3.5336 -0.2232 13 6 -0.6233 3.5622 -0.2224 14 7 0.0830 2.4349 -0.1257 15 6 2.1975 -1.2687 -0.0006 16 1 3.2658 -1.0714 -0.0894 17 6 1.7365 -2.1233 -1.1830 18 7 1.8878 -1.3609 -2.4248 19 6 1.5357 -1.9251 -3.6218 20 1 1.1469 -2.9324 -3.6504 21 6 1.6795 -1.2030 -4.7985 22 7 2.1538 0.0243 -4.7636 23 14 1.1999 -1.9730 -6.4315 24 1 -0.2274 -1.6787 -6.7173 25 1 2.0476 -1.4092 -7.5125 26 1 1.3981 -3.4431 -6.3628 27 6 1.9240 -2.0161 1.3061 28 6 3.0469 -2.0576 2.3447 29 6 2.6917 -3.3168 1.5501 30 1 -0.3634 -1.0239 0.0880 31 1 -0.3633 0.5881 0.8428 32 1 -0.3633 0.4358 -0.9307 33 1 3.2037 3.6304 -0.2172 34 1 1.9923 5.7661 -0.4136 35 1 -0.2219 6.9503 -0.5276 36 1 -2.6778 6.7728 -0.5188 37 1 -3.7462 4.5652 -0.3215 38 1 0.6895 -2.3949 -1.0486 39 1 2.3426 -3.0277 -1.2357 40 1 2.2332 -0.4549 -2.3987 41 1 2.2546 0.5288 -5.5860 42 1 0.8996 -1.9596 1.6745 43 1 3.9805 -1.5528 2.0967 44 1 2.7612 -2.0289 3.3961 45 1 2.1725 -4.1160 2.0791 46 1 3.3914 -3.6404 0.7794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676216158.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = 78.844011 kcal Electronic energy + Delta-G solvation = -29670.492653 eV Core-core repulsion = 25754.717903 eV Total energy + Delta-G solvation = -3915.774749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.37960 -41.14410 -39.13954 -38.29252 -36.70398 -35.91530 -35.02854 -33.24603 -32.12115 -31.96840 -29.90281 -27.94222 -26.83742 -25.85479 -25.20167 -23.77163 -23.55900 -22.91923 -22.15465 -20.63504 -19.70253 -19.19090 -18.95142 -18.16388 -17.64999 -17.12652 -16.88173 -16.64562 -16.09941 -15.84197 -15.63586 -15.48420 -15.27166 -15.12978 -14.88711 -14.69356 -14.55875 -13.98864 -13.93653 -13.65962 -13.28627 -13.25210 -13.14172 -12.89539 -12.81381 -12.73071 -12.41942 -12.25410 -12.14259 -12.10077 -11.82554 -11.73579 -11.35904 -11.09628 -10.97619 -10.90984 -10.08124 -9.95767 -9.88502 -9.62609 -9.03925 -7.96634 -5.26787 -0.97057 -0.52924 0.85845 1.28749 1.42330 1.45414 1.53815 1.77435 2.14244 2.51233 2.54699 2.90629 3.07576 3.34209 3.36777 3.39919 3.57357 3.64236 3.76050 3.93681 3.95352 4.04902 4.06839 4.11766 4.23888 4.25492 4.32670 4.42093 4.47336 4.58104 4.67089 4.76267 4.78614 4.82040 4.87834 4.94593 5.02416 5.04447 5.08548 5.13837 5.23278 5.26997 5.29382 5.44193 5.53737 5.64706 6.17677 6.22619 6.29591 6.91473 7.10499 7.28872 8.03226 8.27655 9.27001 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.004339 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.106854 B = 6451.745902 C = 8610.424334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.570 5.570 3 C 0.558 3.442 4 O -0.565 6.565 5 C 0.123 3.877 6 C -0.148 4.148 7 C -0.028 4.028 8 C -0.156 4.156 9 C -0.042 4.042 10 C -0.161 4.161 11 C 0.157 3.843 12 N -0.507 5.507 13 C 0.264 3.736 14 N -0.449 5.449 15 C 0.169 3.831 16 H 0.073 0.927 17 C 0.149 3.851 18 N -0.741 5.741 19 C -0.242 4.242 20 H 0.080 0.920 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.265 1.265 27 C -0.171 4.171 28 C -0.170 4.170 29 C -0.155 4.155 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.155 0.845 34 H 0.196 0.804 35 H 0.187 0.813 36 H 0.191 0.809 37 H 0.200 0.800 38 H 0.032 0.968 39 H 0.039 0.961 40 H 0.368 0.632 41 H 0.249 0.751 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.121 0.879 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 12.877 15.828 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.299 5.299 3 C 0.345 3.655 4 O -0.444 6.444 5 C -0.032 4.032 6 C -0.169 4.169 7 C -0.055 4.055 8 C -0.161 4.161 9 C -0.068 4.068 10 C -0.181 4.181 11 C -0.020 4.020 12 N -0.217 5.217 13 C 0.026 3.974 14 N -0.162 5.162 15 C 0.065 3.935 16 H 0.092 0.908 17 C 0.022 3.978 18 N -0.384 5.384 19 C -0.374 4.374 20 H 0.098 0.902 21 C -0.269 4.269 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.190 1.190 27 C -0.190 4.190 28 C -0.207 4.207 29 C -0.192 4.192 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.173 0.827 34 H 0.213 0.787 35 H 0.204 0.796 36 H 0.208 0.792 37 H 0.216 0.784 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.200 0.800 41 H 0.057 0.943 42 H 0.137 0.863 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.139 0.861 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.248 10.997 15.919 21.033 hybrid contribution 0.884 1.238 -1.458 2.108 sum -7.364 12.235 14.460 20.323 Atomic orbital electron populations 1.21702 0.77115 1.01424 1.01818 1.47639 1.08401 1.04827 1.69026 1.18293 0.86372 0.83969 0.76841 1.90697 1.14061 1.87179 1.52498 1.21301 0.89542 0.94574 0.97754 1.21926 1.02952 0.91777 1.00234 1.21919 0.92018 0.99587 0.91945 1.20072 0.96350 0.96263 1.03394 1.22009 0.94543 0.97609 0.92682 1.22546 0.95776 1.00322 0.99428 1.23910 1.02071 0.87093 0.88887 1.67609 1.05124 1.34041 1.14925 1.19699 0.91166 0.88248 0.98246 1.67870 1.06781 1.29913 1.11665 1.20851 0.96220 0.82270 0.94130 0.90837 1.21098 0.98412 0.93665 0.84585 1.42492 1.77988 1.15720 1.02162 1.19659 1.33987 0.98192 0.85556 0.90232 1.25623 1.02884 0.96939 1.01482 1.69884 1.53579 1.11715 1.27088 0.85090 0.77088 0.78127 0.79156 1.21477 1.22258 1.18977 1.22422 0.98669 1.02137 0.95801 1.23031 0.98451 1.01721 0.97463 1.23017 1.02511 0.91020 1.02652 0.90703 0.90505 0.94143 0.82723 0.78662 0.79577 0.79158 0.78351 0.94987 0.94345 0.80029 0.94274 0.86341 0.90133 0.86870 0.86057 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.52 7.99 127.77 1.02 5.55 16 2 N -0.57 -22.81 2.20 -825.43 -1.81 -24.63 16 3 C 0.56 23.84 7.65 86.94 0.66 24.50 16 4 O -0.57 -26.26 15.65 -3.68 -0.06 -26.32 16 5 C 0.12 4.71 6.69 42.30 0.28 4.99 16 6 C -0.15 -4.55 9.54 22.36 0.21 -4.34 16 7 C -0.03 -0.63 9.89 22.47 0.22 -0.41 16 8 C -0.16 -3.74 5.75 -21.20 -0.12 -3.86 16 9 C -0.04 -0.58 9.90 22.49 0.22 -0.36 16 10 C -0.16 -1.80 10.04 22.17 0.22 -1.58 16 11 C 0.16 2.75 11.14 85.10 0.95 3.70 16 12 N -0.51 -14.91 10.43 -193.75 -2.02 -16.93 16 13 C 0.26 8.58 7.62 135.12 1.03 9.61 16 14 N -0.45 -16.89 5.97 -182.98 -1.09 -17.98 16 15 C 0.17 6.48 2.30 44.99 0.10 6.59 16 16 H 0.07 3.22 6.74 -2.39 -0.02 3.20 16 17 C 0.15 6.49 5.28 86.38 0.46 6.95 16 18 N -0.74 -41.15 5.44 -343.46 -1.87 -43.01 16 19 C -0.24 -14.33 9.99 84.03 0.84 -13.49 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 22 N -0.97 -63.62 13.06 21.65 0.28 -63.33 16 23 Si 0.98 48.43 29.55 68.60 2.03 50.46 16 24 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 C -0.17 -4.95 5.09 -10.79 -0.05 -5.00 16 28 C -0.17 -4.30 10.18 30.62 0.31 -3.99 16 29 C -0.15 -3.71 9.89 30.62 0.30 -3.41 16 30 H 0.07 2.49 6.38 -2.39 -0.02 2.48 16 31 H 0.08 2.67 6.92 -2.39 -0.02 2.66 16 32 H 0.04 1.78 7.19 -2.39 -0.02 1.76 16 33 H 0.16 4.56 7.61 -2.91 -0.02 4.54 16 34 H 0.20 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.19 0.31 8.06 -2.91 -0.02 0.29 16 37 H 0.20 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.03 1.35 7.07 -2.39 -0.02 1.34 16 39 H 0.04 1.63 7.81 -2.39 -0.02 1.61 16 40 H 0.37 22.60 7.32 -92.71 -0.68 21.92 16 41 H 0.25 15.74 8.31 -92.70 -0.77 14.96 16 42 H 0.12 3.14 7.41 -2.39 -0.02 3.12 16 43 H 0.08 2.30 8.08 -2.39 -0.02 2.28 16 44 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.09 2.32 7.98 -2.39 -0.02 2.31 16 Total: -1.00 -85.96 383.21 2.93 -83.04 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: 0.34 Total: 37.49 kcal Atomic # 6 Polarization: 14.08 SS G_CDS: 7.13 Total: 21.22 kcal Atomic # 7 Polarization: -159.37 SS G_CDS: -6.51 Total: -165.89 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -85.96 2.93 -83.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676216158.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.883 kcal (2) G-P(sol) polarization free energy of solvation -85.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds