Wall clock time and date at job start Sat Apr 11 2020 06:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47147 * 2 1 4 4 C 1.53000 * 109.47077 * 239.99949 * 2 1 3 5 5 O 1.45202 * 109.47042 * 119.99843 * 2 1 3 6 6 C 1.34229 * 116.99879 * 59.99709 * 5 2 1 7 7 O 1.20829 * 119.99806 * 0.02562 * 6 5 2 8 8 C 1.50694 * 120.00004 * 180.02562 * 6 5 2 9 9 C 1.54388 * 113.20667 * 62.93326 * 8 6 5 10 10 O 1.44382 * 104.91437 * 146.85391 * 9 8 6 11 11 C 1.44377 * 105.25521 * 319.23008 * 10 9 8 12 12 C 1.54391 * 104.92832 * 40.74565 * 11 10 9 13 13 H 1.09003 * 113.20236 * 213.21547 * 12 11 10 14 14 C 1.54266 * 108.77764 * 87.17595 * 12 11 10 15 15 N 1.48792 * 104.76787 * 273.43328 * 14 12 11 16 16 C 1.46897 * 111.12565 * 200.69898 * 15 14 12 17 17 C 1.50703 * 109.47406 * 285.29985 * 16 15 14 18 18 O 1.21293 * 119.99715 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99874 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99798 * 180.02562 * 19 17 16 21 21 H 1.07993 * 120.00440 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99972 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00034 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00002 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47070 * 60.00351 * 24 22 20 26 26 H 1.48500 * 109.47243 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47277 * 300.00157 * 24 22 20 28 28 C 1.48503 * 104.06237 * 320.23110 * 15 14 12 29 29 H 1.08996 * 109.46902 * 300.00392 * 1 2 3 30 30 H 1.09007 * 109.46932 * 59.99878 * 1 2 3 31 31 H 1.08993 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46878 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47262 * 299.99547 * 3 2 1 34 34 H 1.08996 * 109.47540 * 59.99998 * 3 2 1 35 35 H 1.09005 * 109.47242 * 299.99987 * 4 2 1 36 36 H 1.08999 * 109.47403 * 60.00410 * 4 2 1 37 37 H 1.08998 * 109.47102 * 180.02562 * 4 2 1 38 38 H 1.09006 * 110.34805 * 265.71314 * 9 8 6 39 39 H 1.08994 * 110.35393 * 27.98956 * 9 8 6 40 40 H 1.09004 * 110.35161 * 281.88300 * 11 10 9 41 41 H 1.08995 * 110.35003 * 159.60989 * 11 10 9 42 42 H 1.09006 * 110.38355 * 32.24446 * 14 12 11 43 43 H 1.08997 * 110.38823 * 154.61947 * 14 12 11 44 44 H 1.09004 * 109.47164 * 45.30142 * 16 15 14 45 45 H 1.08999 * 109.46682 * 165.29979 * 16 15 14 46 46 H 0.97003 * 120.00598 * 0.02562 * 19 17 16 47 47 H 0.97000 * 120.00094 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.38242 * 280.88261 * 28 15 14 49 49 H 1.08997 * 110.38018 * 158.63013 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9566 -2.5027 0.5079 8 6 2.1172 -2.7433 2.5442 9 6 1.5877 -2.1699 3.8763 10 8 1.4083 -3.3199 4.7307 11 6 0.8468 -4.3418 3.8793 12 6 1.6146 -4.2147 2.5459 13 1 1.0050 -4.4544 1.6747 14 6 2.8963 -5.0693 2.6275 15 7 3.9097 -4.1748 3.2494 16 6 5.2734 -4.6381 2.9604 17 6 5.5806 -5.8508 3.8007 18 8 4.7455 -6.2866 4.5648 19 7 6.7833 -6.4511 3.7031 20 6 7.0626 -7.5547 4.4671 21 1 6.3188 -7.9432 5.1468 22 6 8.3024 -8.1739 4.3662 23 7 9.2074 -7.7015 3.5387 24 14 8.6832 -9.6772 5.4077 25 1 7.7156 -10.7578 5.0896 26 1 10.0620 -10.1452 5.1160 27 1 8.5750 -9.3233 6.8458 28 6 3.6539 -2.8514 2.6261 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.3162 -1.4850 4.3104 39 1 0.6360 -1.6624 3.7189 40 1 -0.2169 -4.1625 3.7227 41 1 1.0055 -5.3279 4.3155 42 1 2.7289 -5.9459 3.2534 43 1 3.2167 -5.3696 1.6299 44 1 5.3529 -4.8979 1.9048 45 1 5.9837 -3.8449 3.1939 46 1 7.4514 -6.1024 3.0923 47 1 10.0730 -8.1336 3.4685 48 1 4.0910 -2.8108 1.6284 49 1 4.0578 -2.0537 3.2495 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307916967.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:50 Heat of formation + Delta-G solvation = -170.925434 kcal Electronic energy + Delta-G solvation = -31348.160103 eV Core-core repulsion = 27081.952867 eV Total energy + Delta-G solvation = -4266.207236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.59221 -41.12225 -39.97622 -38.04308 -37.59096 -35.88497 -35.16910 -33.43493 -33.04767 -32.02751 -28.90283 -28.38666 -28.29148 -27.14319 -26.49212 -25.25476 -23.99484 -22.45342 -21.35765 -21.00298 -20.27848 -19.86038 -18.68596 -17.82706 -17.64413 -17.26299 -17.06407 -16.51444 -16.33315 -16.30306 -16.22697 -15.74814 -15.59563 -15.27545 -14.94938 -14.85953 -14.63169 -14.54247 -13.90895 -13.69872 -13.45426 -13.41008 -13.29532 -13.07125 -12.96395 -12.93073 -12.87512 -12.79805 -12.54796 -12.44728 -12.41681 -12.36049 -12.17249 -12.11792 -11.99049 -11.84613 -11.46502 -11.42670 -11.03685 -10.70225 -10.30975 -9.98993 -9.41833 -8.44981 -5.93262 0.98622 1.40316 1.41715 1.45407 1.52699 2.07891 2.28915 2.70002 2.91084 2.98273 3.21982 3.25047 3.41661 3.61650 3.73199 3.75691 3.79135 3.89891 3.95034 3.98793 4.22505 4.28484 4.34585 4.46737 4.49993 4.54089 4.57371 4.60182 4.61707 4.67873 4.69970 4.76282 4.77672 4.81172 4.83258 4.88529 4.89914 4.97439 5.13177 5.25351 5.27748 5.42122 5.45476 5.73264 5.78448 5.83197 6.06130 6.62692 6.67010 7.15023 7.58578 8.15007 8.72449 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002552 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.001363 B =10970.294866 C =11764.336690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.345 6.345 6 C 0.498 3.502 7 O -0.510 6.510 8 C -0.092 4.092 9 C 0.074 3.926 10 O -0.373 6.373 11 C 0.058 3.942 12 C -0.105 4.105 13 H 0.120 0.880 14 C 0.045 3.955 15 N -0.490 5.490 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.611 6.611 19 N -0.576 5.576 20 C -0.330 4.330 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.055 3.945 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.055 0.945 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 19.673 -10.382 26.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.262 6.262 6 C 0.341 3.659 7 O -0.399 6.399 8 C -0.094 4.094 9 C -0.003 4.003 10 O -0.291 6.291 11 C -0.019 4.019 12 C -0.124 4.124 13 H 0.138 0.862 14 C -0.083 4.083 15 N -0.214 5.214 16 C -0.086 4.086 17 C 0.232 3.768 18 O -0.497 6.497 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.072 4.072 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.229 0.771 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.847 19.198 -9.370 26.599 hybrid contribution 0.847 -1.013 -1.073 1.702 sum -15.000 18.185 -10.443 25.783 Atomic orbital electron populations 1.22468 0.93593 1.03634 1.04053 1.22565 0.94895 0.93392 0.82140 1.21880 1.02429 0.90738 1.04345 1.22481 1.01805 1.02013 0.97642 1.86567 1.69423 1.24132 1.46061 1.22579 0.76605 0.80886 0.85836 1.90577 1.35796 1.70374 1.43109 1.22439 0.98289 0.95178 0.93505 1.23374 1.01301 0.89285 0.86296 1.89217 1.84007 1.23161 1.32721 1.23463 0.96800 0.93231 0.88374 1.23306 0.97086 0.91320 1.00638 0.86163 1.23181 0.91317 0.96606 0.97172 1.65158 1.01305 1.01892 1.53048 1.21941 0.92476 0.96424 0.97748 1.20641 0.82639 0.87015 0.86522 1.90496 1.48411 1.67928 1.42818 1.41910 1.13723 1.26988 1.38774 1.19602 0.99905 1.05929 1.20558 0.90384 1.26016 0.94842 1.01917 0.98540 1.69665 1.06685 1.42512 1.37461 0.85010 0.77574 0.77599 0.78291 1.19742 1.19494 1.19761 1.23131 0.91494 0.93382 0.99235 0.91390 0.89080 0.92024 0.91325 0.88278 0.90930 0.92158 0.89004 0.91920 0.86618 0.90738 0.90171 0.89365 0.90891 0.93823 0.91247 0.86806 0.77091 0.91357 0.92639 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 71.98 0.60 -1.91 16 2 C 0.11 1.56 1.13 -10.79 -0.01 1.55 16 3 C -0.14 -1.30 8.85 71.98 0.64 -0.66 16 4 C -0.18 -2.80 8.37 71.98 0.60 -2.20 16 5 O -0.34 -6.54 9.89 -51.41 -0.51 -7.05 16 6 C 0.50 10.91 6.07 71.23 0.43 11.34 16 7 O -0.51 -12.73 11.12 21.96 0.24 -12.48 16 8 C -0.09 -2.12 1.03 -51.18 -0.05 -2.17 16 9 C 0.07 1.64 6.64 72.45 0.48 2.12 16 10 O -0.37 -10.95 11.50 -148.98 -1.71 -12.66 16 11 C 0.06 1.50 7.05 72.45 0.51 2.01 16 12 C -0.10 -2.69 3.76 -9.04 -0.03 -2.73 16 13 H 0.12 2.93 6.96 -2.39 -0.02 2.91 16 14 C 0.05 1.45 5.35 86.37 0.46 1.91 16 15 N -0.49 -16.23 4.83 -886.02 -4.28 -20.51 16 16 C 0.05 1.61 5.32 85.56 0.46 2.06 16 17 C 0.44 21.52 7.63 87.66 0.67 22.19 16 18 O -0.61 -34.35 14.81 -3.07 -0.05 -34.40 16 19 N -0.58 -29.97 5.29 -306.99 -1.62 -31.59 16 20 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 24 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C 0.06 1.36 5.43 86.42 0.47 1.83 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 1.16 5.89 -2.39 -0.01 1.14 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 1.23 5.89 -2.38 -0.01 1.22 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.12 2.26 7.50 -2.38 -0.02 2.24 16 39 H 0.07 1.36 8.00 -2.39 -0.02 1.34 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.09 2.53 7.50 -2.39 -0.02 2.51 16 42 H 0.07 2.82 6.61 -2.38 -0.02 2.80 16 43 H 0.04 1.36 7.76 -2.39 -0.02 1.34 16 44 H 0.07 2.20 7.78 -2.38 -0.02 2.18 16 45 H 0.11 3.49 8.08 -2.39 -0.02 3.47 16 46 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 47 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.06 1.26 7.84 -2.39 -0.02 1.25 16 49 H 0.11 2.41 7.51 -2.39 -0.02 2.39 16 Total: -1.00 -71.25 387.37 1.12 -70.13 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.23 Total: 36.13 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.50 Total: 16.89 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -5.62 Total: -102.12 kcal Atomic # 8 Polarization: -64.57 SS G_CDS: -2.02 Total: -66.59 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.25 1.12 -70.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307916967.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.799 kcal (2) G-P(sol) polarization free energy of solvation -71.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds