Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46825 * 2 1 4 4 N 1.46499 * 109.47374 * 120.00183 * 2 1 3 5 5 C 1.36940 * 119.99492 * 294.90170 * 4 2 1 6 6 H 1.07996 * 120.00237 * 37.15477 * 5 4 2 7 7 C 1.38813 * 119.99604 * 217.14392 * 5 4 2 8 8 N 1.31623 * 120.00380 * 21.27059 * 7 5 4 9 9 Si 1.86806 * 120.00128 * 201.26981 * 7 5 4 10 10 H 1.48495 * 109.47073 * 59.99987 * 9 7 5 11 11 H 1.48497 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46741 * 300.00399 * 9 7 5 13 13 C 1.46501 * 120.00230 * 114.90426 * 4 2 1 14 14 C 1.52995 * 109.46661 * 270.00315 * 13 4 2 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.47122 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99976 * 179.97438 * 16 15 14 18 18 O 1.21278 * 120.00312 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99701 * 180.27131 * 17 16 15 20 20 C 1.50708 * 109.46734 * 179.72538 * 19 17 16 21 21 C 1.38257 * 119.96219 * 269.72221 * 20 19 17 22 22 C 1.38211 * 120.06902 * 179.76690 * 21 20 19 23 23 C 1.38413 * 119.99905 * 0.51401 * 22 21 20 24 24 F 1.35103 * 120.03725 * 179.72073 * 23 22 21 25 25 C 1.38647 * 119.92936 * 359.74194 * 23 22 21 26 26 F 1.35099 * 120.03775 * 180.02562 * 25 23 22 27 27 C 1.38212 * 119.96379 * 90.00553 * 20 19 17 28 28 H 1.08999 * 109.47088 * 303.30729 * 1 2 3 29 29 H 1.08997 * 109.46954 * 63.31058 * 1 2 3 30 30 H 1.09002 * 109.46967 * 183.31103 * 1 2 3 31 31 H 1.09001 * 109.47200 * 240.00447 * 2 1 3 32 32 H 1.09006 * 109.46850 * 181.61882 * 3 2 1 33 33 H 1.09000 * 109.47057 * 301.61955 * 3 2 1 34 34 H 1.08999 * 109.47223 * 61.62225 * 3 2 1 35 35 H 0.96997 * 120.00622 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46987 * 149.99777 * 13 4 2 37 37 H 1.09007 * 109.47046 * 29.99869 * 13 4 2 38 38 H 1.08996 * 109.47859 * 59.99997 * 14 13 4 39 39 H 1.09001 * 109.47275 * 299.98898 * 14 13 4 40 40 H 1.08995 * 109.47418 * 59.99656 * 15 14 13 41 41 H 1.08997 * 109.47216 * 299.99717 * 15 14 13 42 42 H 0.97001 * 119.99889 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.47742 * 299.72522 * 19 17 16 44 44 H 1.09003 * 109.47107 * 59.73179 * 19 17 16 45 45 H 1.08001 * 119.96609 * 0.02930 * 21 20 19 46 46 H 1.07994 * 120.00266 * 180.25790 * 22 21 20 47 47 H 1.07994 * 120.00065 * 359.94992 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7758 -0.1650 2.4371 6 1 0.8340 0.3218 2.6427 7 6 2.7405 -0.2581 3.4309 8 7 4.0015 -0.4529 3.1079 9 14 2.2491 -0.1070 5.2268 10 1 1.2794 -1.1791 5.5666 11 1 3.4549 -0.2414 6.0830 12 1 1.6221 1.2191 5.4585 13 6 2.7663 -1.9435 1.0646 14 6 1.7931 -3.1236 1.0927 15 6 2.5741 -4.4321 0.9547 16 7 1.6424 -5.5622 0.9823 17 6 2.1081 -6.8224 0.8750 18 8 3.2985 -7.0208 0.7552 19 6 1.1490 -7.9846 0.8972 20 6 1.9178 -9.2730 0.7551 21 6 2.1567 -9.7997 -0.5007 22 6 2.8657 -10.9786 -0.6338 23 6 3.3281 -11.6389 0.4914 24 9 4.0163 -12.7943 0.3625 25 6 3.0839 -11.1135 1.7510 26 9 3.5347 -11.7558 2.8507 27 6 2.3782 -9.9299 1.8807 28 1 -0.3633 0.5643 0.8589 29 1 -0.3633 0.4616 -0.9182 30 1 -0.3633 -1.0260 0.0594 31 1 1.8934 -0.5138 -0.8900 32 1 3.1296 1.4427 -0.0290 33 1 1.6531 1.9647 -0.8751 34 1 1.7006 1.9479 0.9042 35 1 4.6757 -0.5176 3.8023 36 1 3.4715 -2.0341 1.8908 37 1 3.3109 -1.9441 0.1203 38 1 1.0880 -3.0330 0.2665 39 1 1.2486 -3.1231 2.0370 40 1 3.2796 -4.5230 1.7806 41 1 3.1184 -4.4324 0.0104 42 1 0.6902 -5.4036 1.0777 43 1 0.6046 -7.9886 1.8415 44 1 0.4437 -7.8895 0.0715 45 1 1.7927 -9.2871 -1.3788 46 1 3.0553 -11.3868 -1.6154 47 1 2.1876 -9.5194 2.8612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317699839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = -97.163200 kcal Electronic energy + Delta-G solvation = -28618.704393 eV Core-core repulsion = 24244.608212 eV Total energy + Delta-G solvation = -4374.096181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.69851 -48.77549 -40.16146 -38.77334 -36.80954 -35.03352 -33.02094 -32.49059 -31.50205 -31.10496 -29.03312 -27.66167 -26.20721 -25.19673 -23.61613 -23.28369 -22.19044 -20.94469 -20.19745 -19.53143 -18.21769 -17.49488 -17.26560 -17.05153 -16.48802 -16.40497 -15.64269 -15.58380 -15.18710 -14.98619 -14.79131 -14.62682 -14.24719 -14.19348 -14.09519 -13.63535 -13.55821 -13.20731 -12.88056 -12.46869 -12.37147 -12.20758 -12.16068 -11.70451 -11.60282 -11.50605 -11.43555 -11.32320 -10.98634 -10.77264 -10.67491 -10.46817 -10.24083 -9.99381 -9.86721 -9.60882 -9.53216 -9.36567 -8.91564 -8.90530 -8.48347 -6.56893 -5.78884 -3.36746 0.57956 0.69818 2.63191 2.90635 3.33895 3.40561 3.41624 3.42470 3.50368 4.02602 4.14921 4.24709 4.45920 4.63890 4.74781 4.80972 4.96643 5.11238 5.20858 5.34701 5.40488 5.49252 5.57007 5.62804 5.67130 5.77159 5.92118 5.99473 6.00523 6.15311 6.28592 6.37317 6.38047 6.42295 6.42910 6.64803 6.70461 6.71738 6.76851 6.78070 7.09242 7.19330 7.32360 7.57013 7.67214 7.82779 8.25330 8.52335 9.19371 9.82263 10.40735 11.20994 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002031 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.150673 B =13782.859891 C =14824.780090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.146 4.146 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.150 3.850 14 C -0.145 4.145 15 C 0.121 3.879 16 N -0.725 5.725 17 C 0.508 3.492 18 O -0.535 6.535 19 C -0.106 4.106 20 C -0.042 4.042 21 C -0.086 4.086 22 C -0.123 4.123 23 C 0.063 3.937 24 F -0.131 7.131 25 C 0.069 3.931 26 F -0.129 7.129 27 C -0.111 4.111 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.024 0.976 38 H 0.049 0.951 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.399 0.601 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 -17.958 -7.742 21.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.077 0.923 7 C -0.188 4.188 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.023 3.977 14 C -0.185 4.185 15 C -0.003 4.003 16 N -0.376 5.376 17 C 0.293 3.707 18 O -0.412 6.412 19 C -0.146 4.146 20 C -0.043 4.043 21 C -0.104 4.104 22 C -0.142 4.142 23 C 0.043 3.957 24 F -0.110 7.110 25 C 0.049 3.951 26 F -0.108 7.108 27 C -0.130 4.130 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.233 0.767 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.757 -18.132 -7.687 20.821 hybrid contribution -0.434 -0.152 1.300 1.379 sum -7.191 -18.284 -6.387 20.659 Atomic orbital electron populations 1.22204 0.98935 1.00446 0.99718 1.20414 0.91935 0.92323 0.89836 1.22039 1.00838 0.97852 0.99713 1.43852 1.64346 1.20496 1.01213 1.18850 0.97449 1.34682 0.87262 0.92337 1.25159 0.94526 1.00502 0.98654 1.69967 0.99382 1.51489 1.32048 0.86530 0.77434 0.78196 0.85557 1.21028 1.21684 1.20825 1.20817 0.93089 0.82904 1.00897 1.22496 1.00390 0.94171 1.01480 1.21492 0.92301 0.84640 1.01855 1.46185 1.11373 1.05973 1.74050 1.20377 0.89360 0.83973 0.77014 1.90749 1.16574 1.85111 1.48775 1.20729 0.97765 0.90127 1.05931 1.19196 0.97683 0.94925 0.92521 1.20946 0.97442 0.94616 0.97403 1.21034 0.99245 0.96213 0.97713 1.17698 0.99237 0.85527 0.93215 1.91525 1.77035 1.45790 1.96602 1.17605 1.01521 0.94184 0.81755 1.91533 1.87230 1.80809 1.51218 1.20935 0.98171 0.93245 1.00681 0.92977 0.94642 0.93800 0.93755 0.93338 0.95215 0.92365 0.93521 0.88554 0.95780 0.93275 0.91675 0.91513 0.91999 0.76680 0.87380 0.87248 0.84223 0.83593 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.19 37.16 0.34 -2.33 16 2 C 0.16 3.21 3.37 -67.93 -0.23 2.98 16 3 C -0.15 -2.87 9.11 37.16 0.34 -2.53 16 4 N -0.58 -13.25 2.37 -165.66 -0.39 -13.64 16 5 C -0.25 -6.41 8.04 -15.06 -0.12 -6.53 16 6 H 0.06 1.50 7.14 -52.49 -0.37 1.13 16 7 C 0.01 0.31 4.96 -17.43 -0.09 0.23 16 8 N -0.89 -24.55 11.43 55.49 0.63 -23.91 16 9 Si 0.89 20.86 29.60 -169.99 -5.03 15.82 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.15 3.23 5.28 -4.04 -0.02 3.21 16 14 C -0.14 -2.48 5.65 -26.73 -0.15 -2.63 16 15 C 0.12 1.86 5.67 -4.04 -0.02 1.84 16 16 N -0.72 -8.68 5.56 -60.29 -0.33 -9.01 16 17 C 0.51 6.20 7.82 -10.99 -0.09 6.12 16 18 O -0.54 -8.99 16.03 5.56 0.09 -8.90 16 19 C -0.11 -0.79 5.83 -29.03 -0.17 -0.96 16 20 C -0.04 -0.39 4.37 -104.62 -0.46 -0.84 16 21 C -0.09 -0.70 9.69 -39.58 -0.38 -1.09 16 22 C -0.12 -1.05 10.02 -39.53 -0.40 -1.45 16 23 C 0.06 0.68 7.31 -39.37 -0.29 0.39 16 24 F -0.13 -1.51 17.18 2.25 0.04 -1.48 16 25 C 0.07 0.78 7.31 -39.37 -0.29 0.49 16 26 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 27 C -0.11 -1.11 9.68 -39.53 -0.38 -1.49 16 28 H 0.05 0.96 7.32 -51.93 -0.38 0.58 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.84 7.77 -51.93 -0.40 0.43 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 35 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.10 2.40 5.48 -51.93 -0.28 2.12 16 37 H 0.02 0.50 7.88 -51.93 -0.41 0.09 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.40 3.65 8.47 -40.82 -0.35 3.30 16 43 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 44 H 0.11 0.51 8.08 -51.93 -0.42 0.09 16 45 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 47 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -30.99 399.34 -8.56 -39.55 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.21 Total: 1.72 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.40 Total: -4.60 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.09 Total: -46.57 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.99 -8.56 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317699839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.617 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds