Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46825 * 2 1 4 4 N 1.46499 * 109.47374 * 120.00183 * 2 1 3 5 5 C 1.36940 * 119.99492 * 294.90170 * 4 2 1 6 6 H 1.07996 * 120.00237 * 37.15477 * 5 4 2 7 7 C 1.38813 * 119.99604 * 217.14392 * 5 4 2 8 8 N 1.31623 * 120.00380 * 21.27059 * 7 5 4 9 9 Si 1.86806 * 120.00128 * 201.26981 * 7 5 4 10 10 H 1.48495 * 109.47073 * 59.99987 * 9 7 5 11 11 H 1.48497 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46741 * 300.00399 * 9 7 5 13 13 C 1.46501 * 120.00230 * 114.90426 * 4 2 1 14 14 C 1.52995 * 109.46661 * 270.00315 * 13 4 2 15 15 C 1.53007 * 109.46736 * 179.97438 * 14 13 4 16 16 N 1.46502 * 109.47122 * 179.97438 * 15 14 13 17 17 C 1.34774 * 119.99976 * 179.97438 * 16 15 14 18 18 O 1.21278 * 120.00312 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99701 * 180.27131 * 17 16 15 20 20 C 1.50708 * 109.46734 * 179.72538 * 19 17 16 21 21 C 1.38257 * 119.96219 * 269.72221 * 20 19 17 22 22 C 1.38211 * 120.06902 * 179.76690 * 21 20 19 23 23 C 1.38413 * 119.99905 * 0.51401 * 22 21 20 24 24 F 1.35103 * 120.03725 * 179.72073 * 23 22 21 25 25 C 1.38647 * 119.92936 * 359.74194 * 23 22 21 26 26 F 1.35099 * 120.03775 * 180.02562 * 25 23 22 27 27 C 1.38212 * 119.96379 * 90.00553 * 20 19 17 28 28 H 1.08999 * 109.47088 * 303.30729 * 1 2 3 29 29 H 1.08997 * 109.46954 * 63.31058 * 1 2 3 30 30 H 1.09002 * 109.46967 * 183.31103 * 1 2 3 31 31 H 1.09001 * 109.47200 * 240.00447 * 2 1 3 32 32 H 1.09006 * 109.46850 * 181.61882 * 3 2 1 33 33 H 1.09000 * 109.47057 * 301.61955 * 3 2 1 34 34 H 1.08999 * 109.47223 * 61.62225 * 3 2 1 35 35 H 0.96997 * 120.00622 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46987 * 149.99777 * 13 4 2 37 37 H 1.09007 * 109.47046 * 29.99869 * 13 4 2 38 38 H 1.08996 * 109.47859 * 59.99997 * 14 13 4 39 39 H 1.09001 * 109.47275 * 299.98898 * 14 13 4 40 40 H 1.08995 * 109.47418 * 59.99656 * 15 14 13 41 41 H 1.08997 * 109.47216 * 299.99717 * 15 14 13 42 42 H 0.97001 * 119.99889 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.47742 * 299.72522 * 19 17 16 44 44 H 1.09003 * 109.47107 * 59.73179 * 19 17 16 45 45 H 1.08001 * 119.96609 * 0.02930 * 21 20 19 46 46 H 1.07994 * 120.00266 * 180.25790 * 22 21 20 47 47 H 1.07994 * 120.00065 * 359.94992 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7758 -0.1650 2.4371 6 1 0.8340 0.3218 2.6427 7 6 2.7405 -0.2581 3.4309 8 7 4.0015 -0.4529 3.1079 9 14 2.2491 -0.1070 5.2268 10 1 1.2794 -1.1791 5.5666 11 1 3.4549 -0.2414 6.0830 12 1 1.6221 1.2191 5.4585 13 6 2.7663 -1.9435 1.0646 14 6 1.7931 -3.1236 1.0927 15 6 2.5741 -4.4321 0.9547 16 7 1.6424 -5.5622 0.9823 17 6 2.1081 -6.8224 0.8750 18 8 3.2985 -7.0208 0.7552 19 6 1.1490 -7.9846 0.8972 20 6 1.9178 -9.2730 0.7551 21 6 2.1567 -9.7997 -0.5007 22 6 2.8657 -10.9786 -0.6338 23 6 3.3281 -11.6389 0.4914 24 9 4.0163 -12.7943 0.3625 25 6 3.0839 -11.1135 1.7510 26 9 3.5347 -11.7558 2.8507 27 6 2.3782 -9.9299 1.8807 28 1 -0.3633 0.5643 0.8589 29 1 -0.3633 0.4616 -0.9182 30 1 -0.3633 -1.0260 0.0594 31 1 1.8934 -0.5138 -0.8900 32 1 3.1296 1.4427 -0.0290 33 1 1.6531 1.9647 -0.8751 34 1 1.7006 1.9479 0.9042 35 1 4.6757 -0.5176 3.8023 36 1 3.4715 -2.0341 1.8908 37 1 3.3109 -1.9441 0.1203 38 1 1.0880 -3.0330 0.2665 39 1 1.2486 -3.1231 2.0370 40 1 3.2796 -4.5230 1.7806 41 1 3.1184 -4.4324 0.0104 42 1 0.6902 -5.4036 1.0777 43 1 0.6046 -7.9886 1.8415 44 1 0.4437 -7.8895 0.0715 45 1 1.7927 -9.2871 -1.3788 46 1 3.0553 -11.3868 -1.6154 47 1 2.1876 -9.5194 2.8612 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317699839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = -114.218394 kcal Electronic energy + Delta-G solvation = -28619.443962 eV Core-core repulsion = 24244.608212 eV Total energy + Delta-G solvation = -4374.835750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.54407 -49.63122 -41.04097 -39.62395 -38.46312 -36.27838 -34.27000 -33.79103 -32.95144 -31.81863 -30.56264 -28.61651 -27.70070 -26.83424 -24.81417 -24.27968 -23.08211 -22.32378 -21.33109 -21.17163 -19.01555 -18.25537 -18.20203 -18.05698 -17.91347 -17.33956 -16.97715 -16.78867 -16.51271 -16.06244 -15.86656 -15.74330 -15.55841 -15.23433 -14.99159 -14.94302 -14.68482 -14.46639 -14.11179 -14.01153 -13.32000 -13.26135 -13.14898 -13.02698 -12.91867 -12.81335 -12.75075 -12.61140 -12.47860 -12.34456 -12.25045 -12.12008 -11.87767 -11.67787 -11.28633 -11.21765 -10.93357 -10.43671 -10.08104 -10.02810 -9.67266 -8.46299 -7.74036 -5.35319 -0.16133 0.00401 1.47275 1.50174 1.55338 1.70480 2.10400 2.52099 2.57931 2.77391 3.26628 3.32137 3.46071 3.61436 3.65754 3.96505 4.04374 4.10908 4.23027 4.37280 4.38789 4.42643 4.57840 4.61281 4.67540 4.75453 4.77367 4.83882 4.85181 4.90522 5.00119 5.02103 5.04985 5.15209 5.19474 5.23720 5.26625 5.33259 5.51977 5.54851 5.66027 5.70980 5.72814 5.78252 5.94078 6.55717 6.65111 7.26459 7.33887 7.98044 8.49417 9.20807 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002031 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.150673 B =13782.859891 C =14824.780090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.242 4.242 6 H 0.056 0.944 7 C -0.039 4.039 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.301 1.301 12 H -0.278 1.278 13 C 0.148 3.852 14 C -0.120 4.120 15 C 0.134 3.866 16 N -0.715 5.715 17 C 0.506 3.494 18 O -0.587 6.587 19 C -0.094 4.094 20 C -0.050 4.050 21 C -0.081 4.081 22 C -0.120 4.120 23 C 0.043 3.957 24 F -0.142 7.142 25 C 0.042 3.958 26 F -0.144 7.144 27 C -0.119 4.119 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.247 0.753 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.058 0.942 42 H 0.417 0.583 43 H 0.135 0.865 44 H 0.151 0.849 45 H 0.171 0.829 46 H 0.171 0.829 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 -18.174 -9.571 23.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.314 5.314 5 C -0.373 4.373 6 H 0.074 0.926 7 C -0.236 4.236 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.228 1.228 12 H -0.204 1.204 13 C 0.021 3.979 14 C -0.160 4.160 15 C 0.009 3.991 16 N -0.367 5.367 17 C 0.294 3.706 18 O -0.467 6.467 19 C -0.133 4.133 20 C -0.051 4.051 21 C -0.099 4.099 22 C -0.138 4.138 23 C 0.023 3.977 24 F -0.121 7.121 25 C 0.022 3.978 26 F -0.123 7.123 27 C -0.138 4.138 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.254 0.746 43 H 0.153 0.847 44 H 0.168 0.832 45 H 0.188 0.812 46 H 0.189 0.811 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.848 -18.350 -9.525 22.901 hybrid contribution 0.503 -0.037 1.760 1.830 sum -9.345 -18.387 -7.765 22.039 Atomic orbital electron populations 1.22045 0.96439 1.00994 1.00575 1.20669 0.93748 0.91967 0.89031 1.21967 0.99201 0.98277 1.00262 1.44094 1.64417 1.21393 1.01532 1.19001 0.96813 1.33118 0.88371 0.92627 1.25748 0.94537 1.01561 1.01707 1.70112 1.00146 1.53770 1.32356 0.85682 0.76642 0.78289 0.81887 1.20335 1.22761 1.20423 1.20727 0.93552 0.84339 0.99300 1.22103 0.99314 0.93027 1.01598 1.21073 0.92241 0.85341 1.00468 1.45979 1.11744 1.05180 1.73795 1.21197 0.89404 0.84702 0.75290 1.90741 1.19140 1.85788 1.51008 1.20789 0.96768 0.86561 1.09139 1.19485 0.97616 0.95458 0.92523 1.21371 0.96262 0.94142 0.98158 1.21372 0.98344 0.96099 0.98016 1.18031 1.00046 0.85701 0.93903 1.91489 1.77442 1.46473 1.96669 1.17933 1.02942 0.95175 0.81709 1.91484 1.87627 1.81224 1.51957 1.21145 0.98031 0.92897 1.01749 0.94553 0.91595 0.93107 0.92411 0.95851 0.91618 0.94566 0.94405 0.92295 0.95773 0.91084 0.92900 0.94416 0.92410 0.74592 0.84700 0.83170 0.81200 0.81130 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.19 71.98 0.66 -3.81 16 2 C 0.15 5.74 3.37 44.99 0.15 5.89 16 3 C -0.14 -5.29 9.11 71.98 0.66 -4.63 16 4 N -0.59 -26.90 2.37 -678.03 -1.61 -28.50 16 5 C -0.24 -12.30 8.04 84.03 0.68 -11.63 16 6 H 0.06 2.83 7.14 -2.91 -0.02 2.81 16 7 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 8 N -0.92 -52.59 11.43 21.65 0.25 -52.34 16 9 Si 0.95 43.43 29.60 68.60 2.03 45.46 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 C 0.15 6.38 5.28 86.38 0.46 6.83 16 14 C -0.12 -3.96 5.65 30.59 0.17 -3.79 16 15 C 0.13 4.04 5.67 86.38 0.49 4.53 16 16 N -0.71 -15.34 5.56 -463.06 -2.57 -17.91 16 17 C 0.51 11.15 7.82 87.66 0.69 11.83 16 18 O -0.59 -19.22 16.03 -3.02 -0.05 -19.27 16 19 C -0.09 -1.02 5.83 29.10 0.17 -0.85 16 20 C -0.05 -0.78 4.37 -19.86 -0.09 -0.87 16 21 C -0.08 -1.08 9.69 22.27 0.22 -0.87 16 22 C -0.12 -1.82 10.02 22.31 0.22 -1.60 16 23 C 0.04 0.92 7.31 22.41 0.16 1.08 16 24 F -0.14 -3.35 17.18 44.97 0.77 -2.58 16 25 C 0.04 0.97 7.31 22.41 0.16 1.13 16 26 F -0.14 -3.74 17.18 44.97 0.77 -2.96 16 27 C -0.12 -2.28 9.68 22.31 0.22 -2.06 16 28 H 0.04 1.25 7.32 -2.39 -0.02 1.23 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 2.03 7.77 -2.39 -0.02 2.01 16 32 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.51 7.50 -2.39 -0.02 1.49 16 35 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 36 H 0.06 3.05 5.48 -2.39 -0.01 3.04 16 37 H 0.02 1.01 7.88 -2.38 -0.02 0.99 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.42 6.06 8.47 -92.71 -0.79 5.28 16 43 H 0.14 0.84 8.08 -2.39 -0.02 0.82 16 44 H 0.15 0.50 8.08 -2.39 -0.02 0.48 16 45 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 46 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -70.93 399.34 5.23 -65.71 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.19 Total: 12.85 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.44 Total: -0.46 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -3.93 Total: -98.75 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.27 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 1.55 Total: -5.54 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -70.93 5.23 -65.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317699839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.513 kcal (2) G-P(sol) polarization free energy of solvation -70.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds