Wall clock time and date at job start Sat Apr 11 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46832 * 2 1 4 4 C 1.53004 * 109.47056 * 119.99255 * 2 1 3 5 5 H 1.09000 * 109.46662 * 60.00272 * 4 2 1 6 6 C 1.52996 * 109.47336 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47059 * 175.00083 * 6 4 2 8 8 C 1.34777 * 119.99828 * 179.72339 * 7 6 4 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 C 1.50701 * 109.47355 * 180.02562 * 10 8 7 12 12 C 1.38253 * 120.00012 * 269.72511 * 11 10 8 13 13 C 1.38216 * 119.99912 * 179.78858 * 12 11 10 14 14 C 1.38257 * 119.99596 * 0.43987 * 13 12 11 15 15 C 1.38212 * 120.00384 * 359.81737 * 14 13 12 16 16 C 1.50699 * 120.00195 * 179.97438 * 15 14 13 17 17 F 1.39898 * 109.47020 * 119.97436 * 16 15 14 18 18 F 1.39896 * 109.47258 * 239.97898 * 16 15 14 19 19 C 1.38212 * 119.99633 * 90.00192 * 11 10 8 20 20 N 1.46494 * 109.47171 * 300.00663 * 4 2 1 21 21 C 1.36934 * 120.00488 * 84.99750 * 20 4 2 22 22 H 1.08003 * 119.99785 * 359.97438 * 21 20 4 23 23 C 1.38817 * 120.00391 * 179.97438 * 21 20 4 24 24 N 1.31620 * 119.99922 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99672 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47285 * 89.99825 * 25 23 21 27 27 H 1.48501 * 109.46856 * 209.99992 * 25 23 21 28 28 H 1.48500 * 109.46930 * 329.99469 * 25 23 21 29 29 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46929 * 300.00406 * 1 2 3 31 31 H 1.08995 * 109.46731 * 60.00655 * 1 2 3 32 32 H 1.08993 * 109.47368 * 239.99294 * 2 1 3 33 33 H 1.09001 * 109.46736 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.46928 * 299.99225 * 3 2 1 35 35 H 1.08994 * 109.47695 * 60.00063 * 3 2 1 36 36 H 1.09004 * 109.47066 * 55.00351 * 6 4 2 37 37 H 1.08994 * 109.46974 * 295.00498 * 6 4 2 38 38 H 0.97001 * 120.00384 * 0.02562 * 7 6 4 39 39 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 40 40 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 41 41 H 1.07997 * 120.00045 * 0.02562 * 12 11 10 42 42 H 1.07996 * 119.99864 * 180.28021 * 13 12 11 43 43 H 1.08004 * 119.99787 * 179.83324 * 14 13 12 44 44 H 1.08998 * 109.46757 * 359.97438 * 16 15 14 45 45 H 1.07997 * 120.00355 * 359.97438 * 19 11 10 46 46 H 0.97009 * 119.99912 * 264.99313 * 20 4 2 47 47 H 0.97005 * 119.99120 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7488 1.2494 6 6 3.5700 -0.7206 1.2498 7 7 4.0582 -1.3042 2.5017 8 6 5.3832 -1.4129 2.7228 9 8 6.1715 -1.0230 1.8876 10 6 5.8855 -2.0190 4.0079 11 6 7.3925 -2.0229 4.0062 12 6 8.0804 -3.1105 3.5010 13 6 9.4626 -3.1122 3.4954 14 6 10.1571 -2.0301 4.0034 15 6 9.4695 -0.9451 4.5133 16 6 10.2266 0.2342 5.0675 17 9 9.8912 1.3847 4.3458 18 9 9.8903 0.4134 6.4136 19 6 8.0869 -0.9415 4.5149 20 7 1.5516 -0.0305 2.4454 21 6 0.3100 -0.3208 2.9448 22 1 -0.3093 -1.0588 2.4566 23 6 -0.1526 0.3332 4.0784 24 7 -1.3461 0.0544 4.5580 25 14 0.9184 1.6101 4.9224 26 1 0.6439 2.9487 4.3411 27 1 0.6134 1.6295 6.3756 28 1 2.3492 1.2670 4.7214 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.9330 0.3033 1.1604 37 1 3.9337 -1.3098 0.4080 38 1 3.4278 -1.6164 3.1696 39 1 5.5250 -1.4312 4.8521 40 1 5.5192 -3.0419 4.0947 41 1 7.5378 -3.9572 3.1072 42 1 9.9999 -3.9599 3.0966 43 1 11.2372 -2.0326 4.0015 44 1 11.2977 0.0509 4.9820 45 1 7.5496 -0.0936 4.9133 46 1 2.1077 0.6326 2.8837 47 1 -1.6692 0.5113 5.3505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319929392.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:12 Heat of formation + Delta-G solvation = -132.387506 kcal Electronic energy + Delta-G solvation = -29546.350343 eV Core-core repulsion = 25170.726722 eV Total energy + Delta-G solvation = -4375.623622 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98983 -48.00135 -41.13391 -39.98577 -38.87122 -35.29347 -34.75948 -34.24676 -32.63121 -32.49585 -30.27037 -28.47460 -27.81071 -27.04747 -25.29580 -23.80611 -23.10915 -22.36424 -21.31491 -20.45524 -19.58420 -18.35074 -18.29258 -18.21617 -17.93512 -17.11010 -16.98251 -16.95859 -16.47403 -16.02746 -15.60956 -15.44308 -15.13798 -14.97786 -14.89855 -14.63362 -14.53311 -14.39094 -14.26929 -14.10387 -13.89618 -13.55363 -13.43914 -13.08870 -13.00288 -12.84488 -12.81640 -12.74398 -12.47651 -12.14697 -12.11080 -12.04647 -11.81060 -11.77486 -11.39675 -11.27495 -11.03772 -10.84726 -10.01941 -9.99665 -9.77163 -9.25848 -7.94541 -5.25351 0.14201 0.32787 1.37837 1.40990 1.46752 1.64730 2.23739 2.51613 2.72922 2.77770 3.25033 3.37859 3.48003 3.59780 3.74423 3.87434 3.95852 4.02912 4.07572 4.13403 4.24283 4.26973 4.28952 4.37814 4.40414 4.54795 4.62385 4.64610 4.73764 4.88829 4.93415 4.94331 5.00041 5.11350 5.20254 5.24805 5.30214 5.33042 5.39020 5.52410 5.52705 5.56987 5.80082 5.89488 5.92414 6.28310 6.59009 7.14501 7.25410 7.89483 8.07959 9.26701 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012268 B = 0.002821 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.863147 B = 9924.760106 C =10793.752841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.174 3.826 5 H 0.061 0.939 6 C 0.117 3.883 7 N -0.717 5.717 8 C 0.511 3.489 9 O -0.579 6.579 10 C -0.103 4.103 11 C -0.079 4.079 12 C -0.094 4.094 13 C -0.122 4.122 14 C -0.085 4.085 15 C -0.186 4.186 16 C 0.307 3.693 17 F -0.218 7.218 18 F -0.214 7.214 19 C -0.094 4.094 20 N -0.741 5.741 21 C -0.197 4.197 22 H 0.070 0.930 23 C -0.057 4.057 24 N -0.982 5.982 25 Si 0.935 3.065 26 H -0.292 1.292 27 H -0.304 1.304 28 H -0.254 1.254 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.108 0.892 46 H 0.362 0.638 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.002 -7.127 -3.073 26.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 C -0.197 4.197 4 C 0.066 3.934 5 H 0.079 0.921 6 C -0.007 4.007 7 N -0.369 5.369 8 C 0.298 3.702 9 O -0.459 6.459 10 C -0.143 4.143 11 C -0.079 4.079 12 C -0.112 4.112 13 C -0.140 4.140 14 C -0.102 4.102 15 C -0.187 4.187 16 C 0.254 3.746 17 F -0.200 7.200 18 F -0.195 7.195 19 C -0.113 4.113 20 N -0.384 5.384 21 C -0.328 4.328 22 H 0.088 0.912 23 C -0.248 4.248 24 N -0.634 5.634 25 Si 0.765 3.235 26 H -0.219 1.219 27 H -0.232 1.232 28 H -0.179 1.179 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.183 0.817 44 H 0.182 0.818 45 H 0.126 0.874 46 H 0.195 0.805 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 25.333 -6.917 -3.634 26.511 hybrid contribution -0.783 1.289 1.241 1.953 sum 24.551 -5.628 -2.393 25.301 Atomic orbital electron populations 1.21739 0.95743 1.00696 1.01118 1.21561 0.95895 0.96799 0.98233 1.21770 1.00410 0.96407 1.01095 1.20659 0.90332 0.95782 0.86621 0.92137 1.21663 0.93927 0.98532 0.86574 1.46055 1.06957 1.62499 1.21342 1.20932 0.81981 0.78376 0.88861 1.90680 1.56118 1.50818 1.48260 1.20755 0.92600 1.05245 0.95672 1.19418 0.94350 0.94847 0.99292 1.21466 0.95475 0.97813 0.96467 1.21508 0.93809 0.99405 0.99238 1.21330 1.01707 0.91612 0.95588 1.20521 0.94468 0.97819 1.05879 1.20946 1.01322 0.79971 0.72386 1.92991 1.94854 1.53826 1.78302 1.92983 1.94824 1.95819 1.35909 1.20903 0.94217 0.97695 0.98463 1.42768 1.16835 1.48085 1.30738 1.18938 0.91815 1.16566 1.05529 0.91210 1.25208 0.97520 1.02280 0.99833 1.69841 1.19867 1.47623 1.26089 0.85720 0.80117 0.80215 0.77466 1.21945 1.23154 1.17897 0.94145 0.93246 0.93063 0.89895 0.92404 0.92310 0.94470 0.92189 0.90231 0.75164 0.87129 0.84860 0.84007 0.82193 0.81662 0.81807 0.87402 0.80504 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 8.26 71.98 0.59 -4.08 16 2 C -0.10 -3.13 2.80 -10.79 -0.03 -3.16 16 3 C -0.14 -4.14 8.69 71.98 0.63 -3.52 16 4 C 0.17 5.67 2.35 44.99 0.11 5.77 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 3.43 5.02 86.38 0.43 3.86 16 7 N -0.72 -20.25 5.39 -463.07 -2.49 -22.74 16 8 C 0.51 14.55 7.82 87.66 0.69 15.24 16 9 O -0.58 -20.51 16.03 -3.04 -0.05 -20.56 16 10 C -0.10 -2.21 5.83 29.10 0.17 -2.04 16 11 C -0.08 -1.78 4.37 -19.87 -0.09 -1.87 16 12 C -0.09 -1.72 9.70 22.27 0.22 -1.51 16 13 C -0.12 -1.75 10.05 22.27 0.22 -1.52 16 14 C -0.08 -1.20 9.67 22.27 0.22 -0.98 16 15 C -0.19 -3.70 5.37 -19.87 -0.11 -3.81 16 16 C 0.31 5.41 5.45 71.24 0.39 5.79 16 17 F -0.22 -5.26 17.26 44.97 0.78 -4.48 16 18 F -0.21 -4.66 17.26 44.97 0.78 -3.88 16 19 C -0.09 -2.32 9.25 22.27 0.21 -2.11 16 20 N -0.74 -29.92 3.48 -322.95 -1.12 -31.04 16 21 C -0.20 -9.91 8.05 84.04 0.68 -9.23 16 22 H 0.07 3.84 7.62 -2.91 -0.02 3.82 16 23 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 24 N -0.98 -59.99 13.97 21.65 0.30 -59.69 16 25 Si 0.93 44.00 27.74 68.60 1.90 45.90 16 26 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 27 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 28 H -0.25 -10.77 6.52 99.48 0.65 -10.12 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 2.11 6.01 -2.39 -0.01 2.10 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.58 6.32 -2.39 -0.02 1.56 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.28 7.60 -2.39 -0.02 1.27 16 36 H 0.06 1.88 6.17 -2.38 -0.01 1.86 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.41 11.42 8.14 -92.71 -0.75 10.67 16 39 H 0.11 2.23 8.08 -2.39 -0.02 2.21 16 40 H 0.13 2.06 8.08 -2.39 -0.02 2.04 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.17 0.99 7.95 -2.91 -0.02 0.96 16 44 H 0.17 1.25 7.88 -2.39 -0.02 1.23 16 45 H 0.11 2.87 8.06 -2.91 -0.02 2.84 16 46 H 0.36 14.87 5.66 -92.70 -0.52 14.35 16 47 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -71.38 390.83 4.53 -66.85 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: -0.34 Total: 35.49 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.78 Total: -5.84 kcal Atomic # 7 Polarization: -110.16 SS G_CDS: -3.32 Total: -113.48 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 9 Polarization: -9.92 SS G_CDS: 1.55 Total: -8.37 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Total: -71.38 4.53 -66.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319929392.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.539 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds