Wall clock time and date at job start Sat Apr 11 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 O 1.42893 * 109.47284 * 239.99828 * 2 1 3 5 5 C 1.53003 * 109.46894 * 119.99772 * 2 1 3 6 6 H 1.09003 * 109.87043 * 173.09022 * 5 2 1 7 7 C 1.54319 * 110.01149 * 294.18876 * 5 2 1 8 8 C 1.55153 * 102.94372 * 141.68295 * 7 5 2 9 9 C 1.55133 * 101.48581 * 324.33449 * 8 7 5 10 10 N 1.47020 * 109.88021 * 52.07416 * 5 2 1 11 11 C 1.34781 * 125.64646 * 61.45517 * 10 5 2 12 12 O 1.21346 * 120.00036 * 356.31596 * 11 10 5 13 13 C 1.49459 * 119.99490 * 176.31789 * 11 10 5 14 14 O 1.21351 * 120.00084 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99290 * 179.97438 * 13 11 10 16 16 C 1.47015 * 125.65375 * 0.04676 * 15 13 11 17 17 C 1.54427 * 107.28473 * 181.02076 * 16 15 13 18 18 C 1.55159 * 102.89161 * 22.18693 * 17 16 15 19 19 O 1.42901 * 111.00700 * 82.59380 * 18 17 16 20 20 C 1.50701 * 111.00300 * 206.40576 * 18 17 16 21 21 H 1.08005 * 120.00183 * 356.82303 * 20 18 17 22 22 C 1.37875 * 120.00158 * 176.81805 * 20 18 17 23 23 N 1.31518 * 119.99756 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00404 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47359 * 89.99726 * 24 22 20 26 26 H 1.48500 * 109.47240 * 210.00012 * 24 22 20 27 27 H 1.48506 * 109.46878 * 329.99944 * 24 22 20 28 28 C 1.47431 * 125.64540 * 179.97438 * 15 13 11 29 29 H 1.08998 * 109.47492 * 300.00099 * 1 2 3 30 30 H 1.08998 * 109.47054 * 60.00301 * 1 2 3 31 31 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47381 * 174.22055 * 3 2 1 33 33 H 1.09005 * 109.47264 * 294.22306 * 3 2 1 34 34 H 1.09006 * 109.47205 * 54.21846 * 3 2 1 35 35 H 0.96696 * 114.00083 * 180.02562 * 4 2 1 36 36 H 1.09003 * 110.72361 * 260.04720 * 7 5 2 37 37 H 1.09008 * 110.72266 * 23.14394 * 7 5 2 38 38 H 1.09000 * 111.00350 * 82.57089 * 8 7 5 39 39 H 1.08997 * 111.00504 * 206.38755 * 8 7 5 40 40 H 1.09006 * 110.49292 * 278.44904 * 9 8 7 41 41 H 1.09000 * 110.34316 * 156.05738 * 9 8 7 42 42 H 1.08998 * 109.88030 * 300.43701 * 16 15 13 43 43 H 1.09003 * 109.88908 * 61.60056 * 16 15 13 44 44 H 1.09000 * 110.72863 * 263.84980 * 17 16 15 45 45 H 1.09005 * 110.76269 * 140.53597 * 17 16 15 46 46 H 0.96695 * 114.00098 * 183.17818 * 19 18 17 47 47 H 0.96999 * 119.99627 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.36246 * 37.06946 * 28 15 13 49 49 H 1.08999 * 110.36511 * 274.75136 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 3.1230 -0.8331 1.1964 7 6 1.6558 0.0764 2.5133 8 6 1.2914 -1.0377 3.5298 9 6 0.6247 -2.0917 2.6072 10 7 1.4054 -2.0430 1.3576 11 6 1.5147 -3.0427 0.4602 12 8 2.1277 -2.8669 -0.5722 13 6 0.8809 -4.3676 0.7367 14 8 0.2683 -4.5435 1.7694 15 7 0.9898 -5.3671 -0.1608 16 6 1.7005 -5.2914 -1.4456 17 6 1.5357 -6.6596 -2.1424 18 6 0.2661 -7.2416 -1.4665 19 8 -0.9200 -6.7280 -2.0761 20 6 0.2785 -8.7481 -1.5006 21 1 1.0797 -9.2704 -2.0023 22 6 -0.7330 -9.4599 -0.8912 23 7 -1.7084 -8.8239 -0.2798 24 14 -0.7173 -11.3273 -0.9328 25 1 0.0198 -11.8427 0.2488 26 1 -2.1127 -11.8348 -0.9058 27 1 -0.0466 -11.7892 -2.1747 28 6 0.4172 -6.7179 -0.0163 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1251 1.4442 0.1035 33 1 1.7636 1.9256 -0.9372 34 1 1.5946 1.9854 0.8337 35 1 2.9703 -0.7121 -1.2326 36 1 2.5019 0.6631 2.8711 37 1 0.7976 0.7194 2.3177 38 1 2.1856 -1.4401 4.0058 39 1 0.5860 -0.6708 4.2753 40 1 -0.4153 -1.8276 2.4153 41 1 0.6887 -3.0829 3.0561 42 1 1.2661 -4.5058 -2.0638 43 1 2.7575 -5.0883 -1.2732 44 1 2.3999 -7.2960 -1.9523 45 1 1.3779 -6.5312 -3.2134 46 1 -1.7385 -7.0254 -1.6560 47 1 -2.4198 -9.3246 0.1493 48 1 -0.5560 -6.6671 0.4720 49 1 1.0937 -7.3581 0.5500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326534176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:16 Heat of formation + Delta-G solvation = -150.844108 kcal Electronic energy + Delta-G solvation = -32268.244520 eV Core-core repulsion = 28002.908076 eV Total energy + Delta-G solvation = -4265.336445 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83659 -39.32928 -37.63933 -37.12578 -36.49747 -34.24593 -32.48799 -32.19095 -31.43001 -30.16354 -28.43922 -27.86073 -27.44558 -25.98325 -24.54101 -22.88094 -21.97524 -21.55042 -19.76302 -19.53880 -18.72376 -17.27200 -17.19985 -16.86690 -16.50123 -15.88217 -15.45091 -15.17272 -14.87710 -14.73420 -14.38578 -14.23332 -13.88279 -13.51292 -13.21918 -13.09102 -13.01758 -12.87054 -12.64235 -12.48618 -12.37471 -12.28515 -12.07294 -11.82652 -11.76264 -11.61670 -11.47081 -11.42709 -11.04568 -10.98190 -10.79746 -10.70112 -10.59189 -10.50312 -10.45907 -10.17294 -9.98557 -9.35583 -8.89035 -8.66962 -8.53682 -8.35407 -7.83047 -6.29067 -4.38357 1.96618 2.60732 3.20528 3.28247 3.31455 3.71588 3.81694 4.15907 4.26460 4.33499 4.43907 4.57467 4.76245 4.79878 4.83814 4.92763 4.99057 5.14734 5.23892 5.36900 5.44586 5.54304 5.60025 5.61679 5.68669 5.72726 5.84592 5.89186 5.92293 5.94089 5.95525 5.98560 6.11204 6.20421 6.30102 6.39248 6.55396 6.76736 6.85910 6.90299 7.21396 7.33112 7.43056 7.73673 7.82751 7.93110 8.02920 8.17189 8.57019 8.65740 9.30901 9.42407 10.78217 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.003062 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.809040 B = 9141.853967 C = 9776.442951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.116 3.884 3 C -0.176 4.176 4 O -0.530 6.530 5 C 0.114 3.886 6 H 0.075 0.925 7 C -0.128 4.128 8 C -0.135 4.135 9 C 0.094 3.906 10 N -0.592 5.592 11 C 0.520 3.480 12 O -0.487 6.487 13 C 0.510 3.490 14 O -0.538 6.538 15 N -0.574 5.574 16 C 0.113 3.887 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.093 3.907 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.371 0.629 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.383 0.617 47 H 0.271 0.729 48 H 0.087 0.913 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 18.861 5.982 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.074 3.926 3 C -0.234 4.234 4 O -0.335 6.335 5 C 0.010 3.990 6 H 0.093 0.907 7 C -0.166 4.166 8 C -0.174 4.174 9 C -0.028 4.028 10 N -0.328 5.328 11 C 0.303 3.697 12 O -0.360 6.360 13 C 0.293 3.707 14 O -0.418 6.418 15 N -0.306 5.306 16 C -0.009 4.009 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.390 6.390 20 C -0.575 4.575 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.028 4.028 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.219 0.781 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.233 0.767 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.813 19.009 5.513 20.932 hybrid contribution 0.140 -1.136 0.673 1.327 sum 6.953 17.873 6.186 20.151 Atomic orbital electron populations 1.21701 0.92728 1.03052 1.01748 1.21504 0.95422 0.90297 0.85382 1.22506 1.01335 0.96627 1.02915 1.86740 1.26316 1.78742 1.41702 1.22379 0.97481 0.83073 0.96059 0.90690 1.22764 1.02440 0.97574 0.93846 1.22883 1.01438 0.95679 0.97354 1.22725 0.94715 1.01898 0.83469 1.48152 1.49888 1.12310 1.22434 1.20006 0.81991 0.84574 0.83109 1.90734 1.40386 1.81332 1.23528 1.19609 0.82443 0.84571 0.84126 1.90640 1.43038 1.82375 1.25715 1.48619 1.50558 1.12947 1.18453 1.22133 0.95783 0.98982 0.84023 1.22732 0.98902 0.94208 1.00129 1.19621 0.82547 0.91397 0.85617 1.86115 1.17310 1.74950 1.60643 1.21493 1.09605 0.90398 1.35961 0.91389 1.25091 0.94913 0.99557 0.93710 1.69655 1.11982 1.36336 1.35382 0.86383 0.77455 0.84339 0.78613 1.20431 1.20997 1.19656 1.23465 0.98953 0.78040 1.02373 0.91458 0.92065 0.91876 0.92416 0.91558 0.91531 0.78133 0.90055 0.89945 0.90615 0.89762 0.91385 0.87555 0.91030 0.91927 0.90495 0.90565 0.76654 0.91946 0.89428 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.42 37.16 0.31 -1.26 16 2 C 0.12 1.26 0.86 -90.62 -0.08 1.18 16 3 C -0.18 -1.36 8.36 37.16 0.31 -1.05 16 4 O -0.53 -7.29 9.77 -59.49 -0.58 -7.87 16 5 C 0.11 1.21 2.56 -66.96 -0.17 1.04 16 6 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.13 -0.96 5.25 -24.90 -0.13 -1.09 16 8 C -0.14 -1.13 7.10 -24.46 -0.17 -1.30 16 9 C 0.09 1.17 6.21 -2.41 -0.01 1.15 16 10 N -0.59 -8.29 2.07 -163.38 -0.34 -8.63 16 11 C 0.52 9.23 7.40 -11.58 -0.09 9.14 16 12 O -0.49 -8.94 11.14 -18.76 -0.21 -9.15 16 13 C 0.51 10.55 7.88 -11.58 -0.09 10.46 16 14 O -0.54 -11.76 13.97 5.50 0.08 -11.69 16 15 N -0.57 -12.47 3.33 -170.95 -0.57 -13.04 16 16 C 0.11 2.26 5.49 -3.01 -0.02 2.25 16 17 C -0.12 -2.55 6.14 -24.84 -0.15 -2.70 16 18 C 0.25 6.12 0.88 -89.61 -0.08 6.04 16 19 O -0.58 -15.15 13.17 -35.23 -0.46 -15.62 16 20 C -0.54 -13.96 8.26 -34.44 -0.28 -14.24 16 21 H 0.07 1.73 7.78 -52.48 -0.41 1.32 16 22 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 23 N -0.89 -23.70 10.69 55.43 0.59 -23.11 16 24 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 C 0.09 2.23 5.51 -2.52 -0.01 2.22 16 29 H 0.07 0.61 6.42 -51.93 -0.33 0.28 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.93 7.20 -51.93 -0.37 0.56 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.42 6.92 -51.93 -0.36 0.06 16 35 H 0.37 4.22 8.82 45.56 0.40 4.63 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.55 5.51 -51.92 -0.29 0.27 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 1.57 5.93 -51.93 -0.31 1.26 16 42 H 0.07 1.48 7.58 -51.93 -0.39 1.09 16 43 H 0.06 1.15 7.69 -51.93 -0.40 0.75 16 44 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.38 10.19 7.25 45.56 0.33 10.52 16 47 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 48 H 0.09 2.33 7.47 -51.93 -0.39 1.95 16 49 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -30.02 376.80 -7.89 -37.90 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -6.29 Total: 16.69 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -0.76 Total: 13.57 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.31 Total: -44.77 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.18 Total: -44.32 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.02 -7.89 -37.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326534176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.941 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds