Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47146 * 2 1 4 4 O 1.42893 * 109.47284 * 239.99828 * 2 1 3 5 5 C 1.53003 * 109.46894 * 119.99772 * 2 1 3 6 6 H 1.09003 * 109.87043 * 173.09022 * 5 2 1 7 7 C 1.54319 * 110.01149 * 294.18876 * 5 2 1 8 8 C 1.55153 * 102.94372 * 141.68295 * 7 5 2 9 9 C 1.55133 * 101.48581 * 324.33449 * 8 7 5 10 10 N 1.47020 * 109.88021 * 52.07416 * 5 2 1 11 11 C 1.34781 * 125.64646 * 61.45517 * 10 5 2 12 12 O 1.21346 * 120.00036 * 356.31596 * 11 10 5 13 13 C 1.49459 * 119.99490 * 176.31789 * 11 10 5 14 14 O 1.21351 * 120.00084 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99290 * 179.97438 * 13 11 10 16 16 C 1.47015 * 125.65375 * 0.04676 * 15 13 11 17 17 C 1.54427 * 107.28473 * 181.02076 * 16 15 13 18 18 C 1.55159 * 102.89161 * 22.18693 * 17 16 15 19 19 O 1.42901 * 111.00700 * 82.59380 * 18 17 16 20 20 C 1.50701 * 111.00300 * 206.40576 * 18 17 16 21 21 H 1.08005 * 120.00183 * 356.82303 * 20 18 17 22 22 C 1.37875 * 120.00158 * 176.81805 * 20 18 17 23 23 N 1.31518 * 119.99756 * 359.97438 * 22 20 18 24 24 Si 1.86802 * 120.00404 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47359 * 89.99726 * 24 22 20 26 26 H 1.48500 * 109.47240 * 210.00012 * 24 22 20 27 27 H 1.48506 * 109.46878 * 329.99944 * 24 22 20 28 28 C 1.47431 * 125.64540 * 179.97438 * 15 13 11 29 29 H 1.08998 * 109.47492 * 300.00099 * 1 2 3 30 30 H 1.08998 * 109.47054 * 60.00301 * 1 2 3 31 31 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47381 * 174.22055 * 3 2 1 33 33 H 1.09005 * 109.47264 * 294.22306 * 3 2 1 34 34 H 1.09006 * 109.47205 * 54.21846 * 3 2 1 35 35 H 0.96696 * 114.00083 * 180.02562 * 4 2 1 36 36 H 1.09003 * 110.72361 * 260.04720 * 7 5 2 37 37 H 1.09008 * 110.72266 * 23.14394 * 7 5 2 38 38 H 1.09000 * 111.00350 * 82.57089 * 8 7 5 39 39 H 1.08997 * 111.00504 * 206.38755 * 8 7 5 40 40 H 1.09006 * 110.49292 * 278.44904 * 9 8 7 41 41 H 1.09000 * 110.34316 * 156.05738 * 9 8 7 42 42 H 1.08998 * 109.88030 * 300.43701 * 16 15 13 43 43 H 1.09003 * 109.88908 * 61.60056 * 16 15 13 44 44 H 1.09000 * 110.72863 * 263.84980 * 17 16 15 45 45 H 1.09005 * 110.76269 * 140.53597 * 17 16 15 46 46 H 0.96695 * 114.00098 * 183.17818 * 19 18 17 47 47 H 0.96999 * 119.99627 * 180.02562 * 23 22 20 48 48 H 1.08998 * 110.36246 * 37.06946 * 28 15 13 49 49 H 1.08999 * 110.36511 * 274.75136 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 3.1230 -0.8331 1.1964 7 6 1.6558 0.0764 2.5133 8 6 1.2914 -1.0377 3.5298 9 6 0.6247 -2.0917 2.6072 10 7 1.4054 -2.0430 1.3576 11 6 1.5147 -3.0427 0.4602 12 8 2.1277 -2.8669 -0.5722 13 6 0.8809 -4.3676 0.7367 14 8 0.2683 -4.5435 1.7694 15 7 0.9898 -5.3671 -0.1608 16 6 1.7005 -5.2914 -1.4456 17 6 1.5357 -6.6596 -2.1424 18 6 0.2661 -7.2416 -1.4665 19 8 -0.9200 -6.7280 -2.0761 20 6 0.2785 -8.7481 -1.5006 21 1 1.0797 -9.2704 -2.0023 22 6 -0.7330 -9.4599 -0.8912 23 7 -1.7084 -8.8239 -0.2798 24 14 -0.7173 -11.3273 -0.9328 25 1 0.0198 -11.8427 0.2488 26 1 -2.1127 -11.8348 -0.9058 27 1 -0.0466 -11.7892 -2.1747 28 6 0.4172 -6.7179 -0.0163 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1251 1.4442 0.1035 33 1 1.7636 1.9256 -0.9372 34 1 1.5946 1.9854 0.8337 35 1 2.9703 -0.7121 -1.2326 36 1 2.5019 0.6631 2.8711 37 1 0.7976 0.7194 2.3177 38 1 2.1856 -1.4401 4.0058 39 1 0.5860 -0.6708 4.2753 40 1 -0.4153 -1.8276 2.4153 41 1 0.6887 -3.0829 3.0561 42 1 1.2661 -4.5058 -2.0638 43 1 2.7575 -5.0883 -1.2732 44 1 2.3999 -7.2960 -1.9523 45 1 1.3779 -6.5312 -3.2134 46 1 -1.7385 -7.0254 -1.6560 47 1 -2.4198 -9.3246 0.1493 48 1 -0.5560 -6.6671 0.4720 49 1 1.0937 -7.3581 0.5500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326534176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = -172.628275 kcal Electronic energy + Delta-G solvation = -32269.189152 eV Core-core repulsion = 28002.908076 eV Total energy + Delta-G solvation = -4266.281077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.06627 -40.76019 -39.15935 -38.67051 -37.50530 -36.10532 -34.22225 -33.44608 -32.36497 -31.94629 -29.76303 -29.26491 -28.22007 -27.68283 -26.01556 -24.32469 -22.93995 -22.73354 -21.52686 -20.76858 -19.95025 -19.17007 -18.49411 -18.15355 -17.73614 -17.24391 -17.03307 -16.93121 -16.34420 -16.13576 -15.61365 -15.41006 -15.10354 -14.89295 -14.69709 -14.47934 -14.37626 -14.15756 -13.85735 -13.82912 -13.52561 -13.36427 -13.25746 -13.11178 -12.95871 -12.85233 -12.74481 -12.65036 -12.56126 -12.43177 -12.35013 -12.25957 -12.13535 -11.82359 -11.63478 -11.46868 -11.23601 -10.90633 -10.69993 -10.45586 -10.24718 -9.73770 -9.50638 -8.26991 -6.44124 0.44741 1.25362 1.42853 1.44829 1.54877 2.20163 2.35327 2.45275 2.98803 3.18401 3.37042 3.57196 3.69837 3.76148 3.82831 4.00814 4.04940 4.07535 4.14130 4.18907 4.30956 4.41670 4.50994 4.64439 4.70568 4.71740 4.77910 4.83754 4.88210 4.91801 4.95776 4.99131 5.03725 5.08220 5.09705 5.15235 5.21606 5.24644 5.31589 5.38779 5.40646 5.41251 5.72926 6.01420 6.17707 6.33869 6.60636 6.68180 6.98337 7.04741 7.26596 7.34066 8.79045 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.003062 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.809040 B = 9141.853967 C = 9776.442951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.111 3.889 3 C -0.165 4.165 4 O -0.560 6.560 5 C 0.107 3.893 6 H 0.081 0.919 7 C -0.117 4.117 8 C -0.123 4.123 9 C 0.085 3.915 10 N -0.584 5.584 11 C 0.519 3.481 12 O -0.498 6.498 13 C 0.499 3.501 14 O -0.557 6.557 15 N -0.584 5.584 16 C 0.125 3.875 17 C -0.115 4.115 18 C 0.233 3.767 19 O -0.589 6.589 20 C -0.556 4.556 21 H 0.071 0.929 22 C 0.027 3.973 23 N -0.916 5.916 24 Si 0.968 3.032 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.266 1.266 28 C 0.108 3.892 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.378 0.622 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.376 0.624 47 H 0.271 0.729 48 H 0.053 0.947 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 20.962 6.910 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 C -0.223 4.223 4 O -0.366 6.366 5 C 0.005 3.995 6 H 0.099 0.901 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.037 4.037 10 N -0.318 5.318 11 C 0.301 3.699 12 O -0.372 6.372 13 C 0.283 3.717 14 O -0.438 6.438 15 N -0.316 5.316 16 C 0.003 3.997 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.398 6.398 20 C -0.594 4.594 21 H 0.089 0.911 22 C -0.174 4.174 23 N -0.556 5.556 24 Si 0.793 3.207 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.191 1.191 28 C -0.014 4.014 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.227 0.773 36 H 0.132 0.868 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.101 0.899 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.388 21.160 6.458 23.661 hybrid contribution -0.401 -1.743 0.437 1.841 sum 7.988 19.417 6.895 22.099 Atomic orbital electron populations 1.21739 0.93714 1.00744 1.02976 1.21691 0.94709 0.92158 0.84526 1.22405 1.02333 0.93969 1.03615 1.86707 1.27103 1.79604 1.43224 1.22731 0.97555 0.81373 0.97867 0.90059 1.22837 1.04286 0.97007 0.91346 1.22859 1.01756 0.94358 0.97069 1.22833 0.95098 1.02119 0.83679 1.48218 1.49068 1.12748 1.21800 1.19388 0.82364 0.84210 0.83950 1.90722 1.41173 1.81369 1.23960 1.20422 0.82039 0.85711 0.83534 1.90626 1.43678 1.83051 1.26418 1.48678 1.51063 1.12452 1.19412 1.22089 0.96584 0.98093 0.82975 1.22745 0.97556 0.94642 1.00336 1.19866 0.83181 0.91389 0.86263 1.86108 1.17603 1.75159 1.60903 1.21775 1.09982 0.91315 1.36311 0.91092 1.25846 0.94564 1.03734 0.93272 1.69768 1.12363 1.37734 1.35698 0.85402 0.77352 0.79238 0.78714 1.20013 1.20892 1.19081 1.23029 0.97035 0.79539 1.01812 0.88647 0.92488 0.95830 0.90941 0.92152 0.89227 0.77339 0.86819 0.88540 0.90162 0.87261 0.91723 0.90439 0.91870 0.89864 0.88824 0.89858 0.77476 0.91959 0.92831 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.42 71.98 0.61 -2.37 16 2 C 0.11 2.18 0.86 -10.79 -0.01 2.17 16 3 C -0.17 -1.97 8.36 71.98 0.60 -1.37 16 4 O -0.56 -15.06 9.77 -125.78 -1.23 -16.29 16 5 C 0.11 2.01 2.56 45.34 0.12 2.13 16 6 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.12 -1.23 5.25 31.78 0.17 -1.07 16 8 C -0.12 -1.65 7.10 32.06 0.23 -1.42 16 9 C 0.08 2.06 6.21 86.93 0.54 2.60 16 10 N -0.58 -16.06 2.07 -789.16 -1.63 -17.69 16 11 C 0.52 18.72 7.40 87.27 0.65 19.36 16 12 O -0.50 -18.37 11.14 19.97 0.22 -18.14 16 13 C 0.50 21.48 7.88 87.27 0.69 22.16 16 14 O -0.56 -25.63 13.97 -3.25 -0.05 -25.67 16 15 N -0.58 -26.24 3.33 -813.13 -2.70 -28.95 16 16 C 0.12 5.01 5.49 86.77 0.48 5.49 16 17 C -0.12 -4.80 6.14 31.82 0.20 -4.61 16 18 C 0.23 11.75 0.88 -10.14 -0.01 11.74 16 19 O -0.59 -31.81 13.17 -148.98 -1.96 -33.77 16 20 C -0.56 -29.29 8.26 25.60 0.21 -29.08 16 21 H 0.07 3.61 7.78 -2.91 -0.02 3.59 16 22 C 0.03 1.40 5.29 84.65 0.45 1.85 16 23 N -0.92 -49.95 10.69 21.45 0.23 -49.72 16 24 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 C 0.11 5.43 5.51 86.86 0.48 5.91 16 29 H 0.09 1.49 6.42 -2.39 -0.02 1.47 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.02 0.69 7.20 -2.39 -0.02 0.67 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.09 0.67 6.92 -2.38 -0.02 0.65 16 35 H 0.38 8.32 8.82 -74.06 -0.65 7.67 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.10 0.79 5.51 -2.38 -0.01 0.78 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.08 2.36 5.93 -2.39 -0.01 2.34 16 42 H 0.06 2.65 7.58 -2.39 -0.02 2.63 16 43 H 0.08 3.00 7.69 -2.39 -0.02 2.98 16 44 H 0.09 3.56 8.03 -2.39 -0.02 3.55 16 45 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 46 H 0.38 20.97 7.25 -74.06 -0.54 20.44 16 47 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.05 3.03 7.47 -2.39 -0.02 3.01 16 49 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 Total: -1.00 -68.17 376.80 0.08 -68.08 By element: Atomic # 1 Polarization: 45.03 SS G_CDS: -0.21 Total: 44.83 kcal Atomic # 6 Polarization: 28.11 SS G_CDS: 5.38 Total: 33.49 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -4.11 Total: -96.36 kcal Atomic # 8 Polarization: -90.86 SS G_CDS: -3.01 Total: -93.88 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -68.17 0.08 -68.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326534176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.543 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds