Wall clock time and date at job start Sat Apr 11 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47111 * 2 1 4 4 O 1.42907 * 109.46872 * 240.00603 * 2 1 3 5 5 C 1.52995 * 109.47477 * 120.00547 * 2 1 3 6 6 H 1.09001 * 109.99814 * 173.25819 * 5 2 1 7 7 C 1.54320 * 109.77202 * 294.41458 * 5 2 1 8 8 C 1.55155 * 102.86011 * 141.88473 * 7 5 2 9 9 C 1.54905 * 101.58537 * 324.30194 * 8 7 5 10 10 N 1.47023 * 109.88126 * 52.16242 * 5 2 1 11 11 C 1.34777 * 125.64920 * 61.68263 * 10 5 2 12 12 O 1.21345 * 119.99636 * 355.97677 * 11 10 5 13 13 C 1.49449 * 120.00218 * 175.97129 * 11 10 5 14 14 O 1.21348 * 119.99839 * 0.02562 * 13 11 10 15 15 N 1.34774 * 119.99825 * 179.97438 * 13 11 10 16 16 C 1.47421 * 125.65420 * 0.04488 * 15 13 11 17 17 C 1.54907 * 104.83534 * 204.09254 * 16 15 13 18 18 C 1.55152 * 101.58047 * 322.98910 * 17 16 15 19 19 O 1.42899 * 110.87471 * 277.06590 * 18 17 16 20 20 C 1.50702 * 110.71923 * 153.86307 * 18 17 16 21 21 H 1.07998 * 120.00288 * 5.02604 * 20 18 17 22 22 C 1.37878 * 119.99913 * 185.02441 * 20 18 17 23 23 N 1.31515 * 119.99930 * 0.02562 * 22 20 18 24 24 Si 1.86808 * 119.99872 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46883 * 179.97438 * 24 22 20 26 26 H 1.48493 * 109.47023 * 300.00183 * 24 22 20 27 27 H 1.48505 * 109.46939 * 60.00003 * 24 22 20 28 28 C 1.47027 * 125.64301 * 180.02562 * 15 13 11 29 29 H 1.08997 * 109.46766 * 305.41554 * 1 2 3 30 30 H 1.08998 * 109.47298 * 65.41738 * 1 2 3 31 31 H 1.09000 * 109.46870 * 185.41468 * 1 2 3 32 32 H 1.08999 * 109.47200 * 174.39613 * 3 2 1 33 33 H 1.08999 * 109.47282 * 294.40399 * 3 2 1 34 34 H 1.09006 * 109.47046 * 54.39808 * 3 2 1 35 35 H 0.96702 * 113.99894 * 179.97438 * 4 2 1 36 36 H 1.08999 * 110.92109 * 23.47113 * 7 5 2 37 37 H 1.08996 * 110.58816 * 260.14644 * 7 5 2 38 38 H 1.09004 * 111.00263 * 206.22648 * 8 7 5 39 39 H 1.08999 * 111.00528 * 82.38077 * 8 7 5 40 40 H 1.08999 * 110.36915 * 278.17466 * 9 8 7 41 41 H 1.09006 * 110.45966 * 155.89159 * 9 8 7 42 42 H 1.09001 * 110.36360 * 322.93470 * 16 15 13 43 43 H 1.08994 * 110.36423 * 85.14101 * 16 15 13 44 44 H 1.09002 * 111.00326 * 204.91485 * 17 16 15 45 45 H 1.08998 * 111.00337 * 81.06210 * 17 16 15 46 46 H 0.96704 * 114.00363 * 177.44911 * 19 18 17 47 47 H 0.97004 * 119.99518 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.88700 * 59.56041 * 28 15 13 49 49 H 1.09000 * 109.88164 * 298.38854 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 1 3.1234 -0.8316 1.1996 7 6 1.6482 0.0776 2.5099 8 6 1.2893 -1.0373 3.5275 9 6 0.6316 -2.0970 2.6088 10 7 1.4072 -2.0440 1.3561 11 6 1.5218 -3.0445 0.4603 12 8 2.1336 -2.8669 -0.5724 13 6 0.8957 -4.3725 0.7391 14 8 0.2836 -4.5499 1.7717 15 7 1.0099 -5.3728 -0.1570 16 6 1.7218 -5.2949 -1.4456 17 6 1.0680 -6.3886 -2.3266 18 6 0.8071 -7.5108 -1.2875 19 8 1.9826 -8.2967 -1.0809 20 6 -0.3445 -8.3811 -1.7204 21 1 -0.8069 -8.2250 -2.6838 22 6 -0.8077 -9.3766 -0.8865 23 7 -0.2449 -9.5664 0.2869 24 14 -2.2348 -10.4559 -1.4235 25 1 -2.5382 -11.4426 -0.3559 26 1 -3.4298 -9.6097 -1.6704 27 1 -1.8703 -11.1738 -2.6714 28 6 0.4456 -6.7225 -0.0109 29 1 -0.3633 0.5955 0.8375 30 1 -0.3634 0.4275 -0.9345 31 1 -0.3633 -1.0231 0.0970 32 1 3.1254 1.4441 0.1004 33 1 1.7608 1.9266 -0.9358 34 1 1.5971 1.9845 0.8356 35 1 2.9703 -0.7114 -1.2333 36 1 0.7852 0.7141 2.3147 37 1 2.4917 0.6685 2.8668 38 1 0.5819 -0.6731 4.2726 39 1 2.1855 -1.4351 4.0035 40 1 -0.4111 -1.8412 2.4204 41 1 0.7033 -3.0877 3.0577 42 1 1.5839 -4.3120 -1.8963 43 1 2.7827 -5.5019 -1.3059 44 1 1.7542 -6.7268 -3.1030 45 1 0.1335 -6.0334 -2.7609 46 1 1.8817 -8.9870 -0.4112 47 1 -0.5707 -10.2671 0.8733 48 1 -0.6377 -6.6622 0.0933 49 1 0.8774 -7.2124 0.8618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326534177.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:19 Heat of formation + Delta-G solvation = -149.721077 kcal Electronic energy + Delta-G solvation = -32214.314205 eV Core-core repulsion = 27949.026459 eV Total energy + Delta-G solvation = -4265.287746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87114 -39.35417 -37.66735 -37.16960 -36.52692 -34.28476 -32.51185 -32.22558 -31.45816 -30.09563 -28.46578 -27.85546 -27.46930 -25.99380 -24.54283 -22.88605 -21.98779 -21.61396 -19.82138 -19.48120 -18.77396 -17.28912 -17.16976 -16.87227 -16.54532 -15.94219 -15.56783 -15.08747 -14.88661 -14.74996 -14.49835 -14.19710 -13.80729 -13.51780 -13.25020 -13.05122 -12.95686 -12.92060 -12.69581 -12.49879 -12.41377 -12.33129 -12.11101 -11.84503 -11.82235 -11.66662 -11.52325 -11.38984 -11.03720 -10.99832 -10.83451 -10.72179 -10.61390 -10.51924 -10.45849 -10.14391 -9.99048 -9.27980 -8.88461 -8.64379 -8.54597 -8.32257 -7.93527 -6.28859 -4.37519 1.93775 2.58185 3.23189 3.28316 3.30821 3.68193 3.80499 4.14112 4.27238 4.31987 4.42175 4.55662 4.73585 4.77919 4.81246 4.91103 4.99609 5.13034 5.22636 5.35289 5.43258 5.55733 5.57905 5.60241 5.66479 5.70106 5.85425 5.88924 5.91202 5.92869 5.95847 5.96414 6.09876 6.16746 6.26873 6.38915 6.56833 6.80283 6.87379 6.90398 7.23630 7.33479 7.41889 7.72589 7.80170 7.91923 8.05521 8.14486 8.54796 8.66549 9.29690 9.38382 10.78739 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.003070 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.764775 B = 9117.670377 C = 9631.231418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.116 3.884 3 C -0.176 4.176 4 O -0.531 6.531 5 C 0.114 3.886 6 H 0.076 0.924 7 C -0.128 4.128 8 C -0.136 4.136 9 C 0.094 3.906 10 N -0.591 5.591 11 C 0.521 3.479 12 O -0.488 6.488 13 C 0.508 3.492 14 O -0.538 6.538 15 N -0.576 5.576 16 C 0.100 3.900 17 C -0.120 4.120 18 C 0.248 3.752 19 O -0.583 6.583 20 C -0.537 4.537 21 H 0.067 0.933 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.285 1.285 26 H -0.275 1.275 27 H -0.274 1.274 28 C 0.103 3.897 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.372 0.628 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.382 0.618 47 H 0.271 0.729 48 H 0.071 0.929 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.341 20.586 4.758 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 C -0.234 4.234 4 O -0.336 6.336 5 C 0.010 3.990 6 H 0.094 0.906 7 C -0.166 4.166 8 C -0.174 4.174 9 C -0.028 4.028 10 N -0.327 5.327 11 C 0.304 3.696 12 O -0.361 6.361 13 C 0.291 3.709 14 O -0.417 6.417 15 N -0.308 5.308 16 C -0.022 4.022 17 C -0.158 4.158 18 C 0.207 3.793 19 O -0.392 6.392 20 C -0.576 4.576 21 H 0.085 0.915 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.211 1.211 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.018 4.018 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.220 0.780 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.232 0.768 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.941 20.746 4.294 21.550 hybrid contribution -0.420 -0.897 0.531 1.124 sum 3.521 19.849 4.825 20.728 Atomic orbital electron populations 1.21708 0.92763 1.02903 1.01896 1.21500 0.95388 0.90319 0.85370 1.22508 1.01387 0.96598 1.02908 1.86725 1.26415 1.78764 1.41708 1.22391 0.97541 0.82995 0.96101 0.90598 1.22766 1.02410 0.97565 0.93860 1.22851 1.01533 0.95622 0.97391 1.22686 0.94808 1.01892 0.83449 1.48170 1.50012 1.12199 1.22327 1.20004 0.81874 0.84522 0.83152 1.90704 1.40385 1.81462 1.23506 1.19599 0.82554 0.84652 0.84110 1.90641 1.43037 1.82489 1.25576 1.48682 1.50600 1.12680 1.18790 1.22623 0.95991 1.00631 0.82997 1.22809 1.00461 0.94786 0.97756 1.19507 0.84303 0.87429 0.88052 1.86120 1.38220 1.50706 1.64167 1.21491 1.16005 1.16365 1.03708 0.91473 1.25085 0.96864 0.96888 0.94472 1.69688 1.41921 1.32932 1.08876 0.86447 0.82079 0.79940 0.78374 1.21086 1.20013 1.19963 1.23180 0.98506 0.78128 1.01993 0.91489 0.91995 0.91897 0.92382 0.91561 0.91528 0.78041 0.89932 0.90024 0.89734 0.90606 0.91418 0.87537 0.89266 0.91603 0.90421 0.90516 0.76777 0.91934 0.91064 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.43 37.16 0.31 -1.18 16 2 C 0.12 1.21 0.86 -90.62 -0.08 1.14 16 3 C -0.18 -1.31 8.36 37.16 0.31 -1.00 16 4 O -0.53 -7.04 9.77 -59.49 -0.58 -7.62 16 5 C 0.11 1.18 2.58 -66.96 -0.17 1.01 16 6 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.13 -0.93 5.22 -24.90 -0.13 -1.06 16 8 C -0.14 -1.12 7.08 -24.59 -0.17 -1.29 16 9 C 0.09 1.14 6.20 -2.53 -0.02 1.13 16 10 N -0.59 -8.13 1.97 -163.52 -0.32 -8.46 16 11 C 0.52 9.09 7.43 -11.59 -0.09 9.00 16 12 O -0.49 -8.76 10.79 -18.76 -0.20 -8.96 16 13 C 0.51 10.42 7.88 -11.59 -0.09 10.33 16 14 O -0.54 -11.68 14.04 5.50 0.08 -11.60 16 15 N -0.58 -12.48 3.33 -171.03 -0.57 -13.05 16 16 C 0.10 1.99 6.06 -2.53 -0.02 1.98 16 17 C -0.12 -2.54 6.23 -24.59 -0.15 -2.69 16 18 C 0.25 6.08 0.86 -89.94 -0.08 6.00 16 19 O -0.58 -14.83 13.09 -35.23 -0.46 -15.29 16 20 C -0.54 -14.13 8.12 -34.44 -0.28 -14.41 16 21 H 0.07 1.74 7.78 -52.49 -0.41 1.33 16 22 C 0.07 1.83 5.26 -17.82 -0.09 1.73 16 23 N -0.90 -23.72 10.95 55.43 0.61 -23.11 16 24 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.10 2.51 5.24 -3.06 -0.02 2.49 16 29 H 0.07 0.57 6.55 -51.93 -0.34 0.23 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.87 7.04 -51.93 -0.37 0.50 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.40 6.92 -51.93 -0.36 0.04 16 35 H 0.37 4.11 8.82 45.56 0.40 4.51 16 36 H 0.08 0.53 5.57 -51.93 -0.29 0.24 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.11 1.56 5.93 -51.93 -0.31 1.25 16 42 H 0.09 1.71 6.16 -51.93 -0.32 1.39 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 45 H 0.08 1.57 8.04 -51.93 -0.42 1.15 16 46 H 0.38 9.85 7.42 45.56 0.34 10.19 16 47 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.07 1.87 7.81 -51.93 -0.41 1.47 16 49 H 0.07 1.83 7.93 -51.93 -0.41 1.42 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -29.85 376.31 -7.81 -37.66 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -6.25 Total: 16.14 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -0.76 Total: 13.17 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.28 Total: -44.61 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -1.17 Total: -43.47 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.85 -7.81 -37.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326534177.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.066 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds