Wall clock time and date at job start Sat Apr 11 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47154 * 2 1 4 4 O 1.42898 * 109.47402 * 239.99602 * 2 1 3 5 5 C 1.53000 * 109.47043 * 119.99952 * 2 1 3 6 6 H 1.08997 * 110.00281 * 64.72277 * 5 2 1 7 7 C 1.54338 * 109.98884 * 303.68997 * 5 2 1 8 8 C 1.55158 * 103.02062 * 218.66559 * 7 5 2 9 9 C 1.54910 * 101.58128 * 35.30652 * 8 7 5 10 10 N 1.47015 * 109.88483 * 185.82556 * 5 2 1 11 11 C 1.34785 * 125.64630 * 298.39161 * 10 5 2 12 12 O 1.21353 * 119.99704 * 353.65885 * 11 10 5 13 13 C 1.49447 * 119.99991 * 173.66270 * 11 10 5 14 14 O 1.21349 * 119.99903 * 359.97438 * 13 11 10 15 15 N 1.34771 * 119.99849 * 180.02562 * 13 11 10 16 16 C 1.47426 * 125.65186 * 0.02562 * 15 13 11 17 17 C 1.54906 * 104.83489 * 155.83441 * 16 15 13 18 18 C 1.55157 * 101.61395 * 36.99012 * 17 16 15 19 19 O 1.42905 * 110.72127 * 82.88015 * 18 17 16 20 20 C 1.50703 * 110.71962 * 206.15183 * 18 17 16 21 21 H 1.08001 * 119.99729 * 0.02562 * 20 18 17 22 22 C 1.37876 * 120.00231 * 180.02562 * 20 18 17 23 23 N 1.31512 * 119.99931 * 359.97438 * 22 20 18 24 24 Si 1.86801 * 120.00204 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47445 * 89.99803 * 24 22 20 26 26 H 1.48499 * 109.46934 * 210.00309 * 24 22 20 27 27 H 1.48503 * 109.46760 * 329.99540 * 24 22 20 28 28 C 1.47026 * 125.64589 * 179.97438 * 15 13 11 29 29 H 1.08996 * 109.47480 * 303.41668 * 1 2 3 30 30 H 1.09010 * 109.46620 * 63.41689 * 1 2 3 31 31 H 1.08997 * 109.47564 * 183.41052 * 1 2 3 32 32 H 1.09001 * 109.46722 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47112 * 299.99589 * 3 2 1 34 34 H 1.08997 * 109.47443 * 59.99675 * 3 2 1 35 35 H 0.96700 * 113.99849 * 162.26617 * 4 2 1 36 36 H 1.09007 * 110.84864 * 100.19908 * 7 5 2 37 37 H 1.09003 * 110.66893 * 337.04711 * 7 5 2 38 38 H 1.09007 * 110.99921 * 277.23254 * 8 7 5 39 39 H 1.09002 * 111.00568 * 153.38258 * 8 7 5 40 40 H 1.09001 * 110.36716 * 204.15490 * 9 8 7 41 41 H 1.08997 * 110.36746 * 81.83020 * 9 8 7 42 42 H 1.09003 * 110.36289 * 36.99229 * 16 15 13 43 43 H 1.09001 * 110.36521 * 274.67313 * 16 15 13 44 44 H 1.09003 * 111.00386 * 155.08003 * 17 16 15 45 45 H 1.08993 * 111.00542 * 278.89730 * 17 16 15 46 46 H 0.96702 * 114.00158 * 179.97438 * 19 18 17 47 47 H 0.97001 * 120.00060 * 179.97438 * 23 22 20 48 48 H 1.09005 * 109.88382 * 300.50701 * 28 15 13 49 49 H 1.09000 * 109.88564 * 61.67667 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7519 -1.7720 1.2169 7 6 1.4573 -0.0589 2.5157 8 6 2.6470 -0.1005 3.5108 9 6 3.8525 0.1223 2.5639 10 7 3.5033 -0.6062 1.3307 11 6 4.3803 -1.0828 0.4249 12 8 3.9878 -1.7635 -0.4999 13 6 5.8362 -0.7731 0.5595 14 8 6.2286 -0.0921 1.4841 15 7 6.7130 -1.2492 -0.3465 16 6 6.3744 -2.0834 -1.5139 17 6 7.5264 -1.8421 -2.5211 18 6 8.7508 -1.7312 -1.5746 19 8 9.2425 -3.0279 -1.2298 20 6 9.8371 -0.8974 -2.2037 21 1 9.6921 -0.4740 -3.1866 22 6 11.0162 -0.6749 -1.5244 23 7 11.1925 -1.1900 -0.3273 24 14 12.3624 0.3592 -2.3038 25 1 12.1695 1.7841 -1.9330 26 1 13.6868 -0.1040 -1.8171 27 1 12.3014 0.2194 -3.7810 28 6 8.1655 -1.0218 -0.3348 29 1 -0.3634 0.5659 0.8577 30 1 -0.3633 0.4599 -0.9191 31 1 -0.3634 -1.0258 0.0611 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 2.9308 -0.4858 -1.3794 36 1 0.6131 -0.6317 2.8996 37 1 1.1620 0.9701 2.3105 38 1 2.7108 -1.0711 4.0029 39 1 2.5718 0.7031 4.2435 40 1 4.7612 -0.2893 3.0032 41 1 3.9789 1.1844 2.3541 42 1 5.4233 -1.7677 -1.9426 43 1 6.3330 -3.1348 -1.2297 44 1 7.6338 -2.6870 -3.2015 45 1 7.3745 -0.9150 -3.0737 46 1 10.0084 -3.0141 -0.6397 47 1 12.0222 -1.0339 0.1505 48 1 8.3739 0.0468 -0.3870 49 1 8.5993 -1.4423 0.5725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326534178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:22 Heat of formation + Delta-G solvation = -170.771552 kcal Electronic energy + Delta-G solvation = -32261.266137 eV Core-core repulsion = 27995.065574 eV Total energy + Delta-G solvation = -4266.200563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29037 -40.82857 -39.19969 -38.85931 -37.60916 -36.17459 -34.20436 -33.56535 -32.44126 -31.91532 -29.82429 -29.28046 -28.28605 -27.74793 -26.08654 -24.39662 -23.08515 -22.79944 -21.49859 -20.80774 -19.90727 -19.19967 -18.68102 -18.22353 -18.14187 -17.27653 -17.09627 -16.84056 -16.35071 -16.24945 -15.92566 -15.41127 -15.11334 -14.85269 -14.80935 -14.52125 -14.44047 -14.19285 -13.99946 -13.81759 -13.55525 -13.46874 -13.19954 -13.10846 -13.01640 -12.88611 -12.84769 -12.61691 -12.56629 -12.51073 -12.33767 -12.29583 -12.14662 -11.92794 -11.79290 -11.49978 -11.21635 -10.97600 -10.71807 -10.51714 -10.30514 -9.88250 -9.64896 -8.29579 -6.45565 0.26028 1.12260 1.41586 1.43797 1.53616 2.02199 2.30261 2.38931 2.96381 3.08038 3.22662 3.51903 3.70336 3.76741 3.78761 3.95397 4.03204 4.05477 4.12721 4.13791 4.31965 4.36721 4.48199 4.57866 4.65654 4.69092 4.76910 4.79430 4.85233 4.88867 4.91000 4.97012 5.04438 5.05569 5.07332 5.11111 5.15411 5.18799 5.29477 5.33179 5.37586 5.41893 5.71339 5.97705 6.02930 6.27352 6.48867 6.62391 6.72457 6.91144 7.26352 7.35943 8.76976 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020071 B = 0.003069 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.731178 B = 9122.314666 C = 9530.116506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 C -0.176 4.176 4 O -0.571 6.571 5 C 0.108 3.892 6 H 0.073 0.927 7 C -0.118 4.118 8 C -0.124 4.124 9 C 0.093 3.907 10 N -0.581 5.581 11 C 0.520 3.480 12 O -0.514 6.514 13 C 0.502 3.498 14 O -0.551 6.551 15 N -0.583 5.583 16 C 0.110 3.890 17 C -0.115 4.115 18 C 0.234 3.766 19 O -0.590 6.590 20 C -0.558 4.558 21 H 0.069 0.931 22 C 0.027 3.973 23 N -0.917 5.917 24 Si 0.966 3.034 25 H -0.277 1.277 26 H -0.281 1.281 27 H -0.267 1.267 28 C 0.118 3.882 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.371 0.629 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.379 0.621 47 H 0.273 0.727 48 H 0.048 0.952 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.501 5.046 6.581 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.066 3.934 3 C -0.233 4.233 4 O -0.382 6.382 5 C 0.006 3.994 6 H 0.091 0.909 7 C -0.155 4.155 8 C -0.162 4.162 9 C -0.029 4.029 10 N -0.314 5.314 11 C 0.304 3.696 12 O -0.392 6.392 13 C 0.285 3.715 14 O -0.431 6.431 15 N -0.315 5.315 16 C -0.012 4.012 17 C -0.152 4.152 18 C 0.194 3.806 19 O -0.399 6.399 20 C -0.596 4.596 21 H 0.087 0.913 22 C -0.174 4.174 23 N -0.556 5.556 24 Si 0.791 3.209 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.191 1.191 28 C -0.005 4.005 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.223 0.777 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.230 0.770 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.455 4.599 6.330 23.779 hybrid contribution 2.636 0.660 0.127 2.721 sum -19.819 5.259 6.457 21.497 Atomic orbital electron populations 1.21801 0.90160 1.03227 1.03862 1.21828 0.96472 0.90939 0.84161 1.22527 1.00301 0.96272 1.04239 1.86529 1.33166 1.72643 1.45888 1.22695 0.77649 1.01023 0.98032 0.90936 1.22869 0.98433 1.02990 0.91210 1.22864 0.91997 1.04310 0.97024 1.22733 0.99857 0.96880 0.83411 1.48439 1.06849 1.53857 1.22246 1.19603 0.86028 0.80949 0.83067 1.90660 1.78978 1.37096 1.32501 1.20162 0.87404 0.81433 0.82499 1.90677 1.80152 1.39683 1.32570 1.48690 1.08348 1.48627 1.25839 1.22618 0.99498 0.94357 0.84684 1.22828 0.92522 1.02939 0.96958 1.19707 0.91225 0.81018 0.88657 1.86091 1.51982 1.30636 1.71172 1.21825 1.00876 1.32904 1.03960 0.91296 1.25814 1.00520 0.96065 0.94956 1.69666 1.27447 1.45485 1.13019 0.85425 0.77968 0.78520 0.78965 1.20241 1.20644 1.19095 1.22785 0.76796 0.99939 1.00947 0.87957 0.91890 0.92114 0.94724 0.91469 0.88584 0.77671 0.87036 0.87932 0.90396 0.86735 0.91109 0.90591 0.87646 0.91738 0.89261 0.89529 0.76968 0.91794 0.93374 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.48 71.98 0.61 -1.26 16 2 C 0.11 2.16 0.94 -10.79 -0.01 2.15 16 3 C -0.18 -3.18 8.22 71.98 0.59 -2.59 16 4 O -0.57 -16.45 11.63 -126.41 -1.47 -17.92 16 5 C 0.11 2.14 2.53 45.35 0.11 2.25 16 6 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 7 C -0.12 -1.22 5.23 31.79 0.17 -1.05 16 8 C -0.12 -1.54 7.09 31.99 0.23 -1.31 16 9 C 0.09 2.04 5.85 86.86 0.51 2.55 16 10 N -0.58 -15.02 2.10 -789.60 -1.66 -16.68 16 11 C 0.52 17.38 6.99 87.27 0.61 17.99 16 12 O -0.51 -18.05 10.49 19.31 0.20 -17.85 16 13 C 0.50 20.06 7.88 87.27 0.69 20.75 16 14 O -0.55 -23.68 14.27 -3.24 -0.05 -23.73 16 15 N -0.58 -24.88 3.33 -813.27 -2.71 -27.58 16 16 C 0.11 4.24 6.06 86.85 0.53 4.76 16 17 C -0.11 -4.68 6.22 31.99 0.20 -4.48 16 18 C 0.23 11.54 0.86 -10.33 -0.01 11.53 16 19 O -0.59 -30.62 13.09 -148.98 -1.95 -32.57 16 20 C -0.56 -29.17 8.11 25.60 0.21 -28.96 16 21 H 0.07 3.51 7.76 -2.91 -0.02 3.49 16 22 C 0.03 1.41 5.28 84.65 0.45 1.86 16 23 N -0.92 -49.01 10.98 21.45 0.24 -48.77 16 24 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 28 C 0.12 5.81 5.54 86.74 0.48 6.29 16 29 H 0.10 0.76 6.94 -2.39 -0.02 0.75 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.03 0.79 7.37 -2.39 -0.02 0.78 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.18 6.30 -2.39 -0.02 1.16 16 35 H 0.37 11.47 5.82 -74.06 -0.43 11.04 16 36 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.10 0.71 5.49 -2.39 -0.01 0.70 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.95 6.55 -2.39 -0.02 1.94 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 42 H 0.11 3.69 6.16 -2.39 -0.01 3.68 16 43 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 45 H 0.09 3.33 8.02 -2.39 -0.02 3.31 16 46 H 0.38 20.40 6.98 -74.06 -0.52 19.89 16 47 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 48 H 0.05 2.54 7.81 -2.38 -0.02 2.53 16 49 H 0.04 2.19 8.07 -2.39 -0.02 2.17 16 Total: -1.00 -64.60 375.01 0.02 -64.58 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: 0.04 Total: 46.51 kcal Atomic # 6 Polarization: 25.13 SS G_CDS: 5.36 Total: 30.48 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -4.13 Total: -93.03 kcal Atomic # 8 Polarization: -88.81 SS G_CDS: -3.26 Total: -92.07 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -64.60 0.02 -64.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326534178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.195 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds