Wall clock time and date at job start Sat Apr 11 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47460 * 2 1 4 4 H 1.08996 * 109.71026 * 305.53784 * 3 2 1 5 5 C 1.53288 * 109.68309 * 184.99980 * 3 2 1 6 6 O 1.42962 * 109.26649 * 292.60795 * 5 3 2 7 7 C 1.42963 * 114.16522 * 297.39149 * 6 5 3 8 8 H 1.08998 * 109.51571 * 302.65931 * 7 6 5 9 9 C 1.52996 * 109.51458 * 182.50361 * 7 6 5 10 10 C 1.53297 * 109.22407 * 62.58154 * 7 6 5 11 11 N 1.47159 * 108.38353 * 307.69932 * 10 7 6 12 12 C 1.34772 * 120.98269 * 230.51123 * 11 10 7 13 13 O 1.21351 * 120.00019 * 173.48534 * 12 11 10 14 14 C 1.49450 * 120.00040 * 353.48646 * 12 11 10 15 15 O 1.21352 * 119.99746 * 353.39085 * 14 12 11 16 16 N 1.34777 * 120.00038 * 173.39171 * 14 12 11 17 17 C 1.47423 * 125.65006 * 359.69402 * 16 14 12 18 18 C 1.55126 * 104.72493 * 155.81468 * 17 16 14 19 19 C 1.55159 * 101.48635 * 37.29215 * 18 17 16 20 20 O 1.42902 * 110.71860 * 82.69437 * 19 18 17 21 21 C 1.50697 * 110.72458 * 205.96996 * 19 18 17 22 22 H 1.07996 * 119.99654 * 356.43155 * 21 19 18 23 23 C 1.37879 * 120.00085 * 176.43148 * 21 19 18 24 24 N 1.31513 * 120.00190 * 354.40670 * 23 21 19 25 25 Si 1.86801 * 119.99926 * 174.40280 * 23 21 19 26 26 H 1.48505 * 109.46721 * 94.99436 * 25 23 21 27 27 H 1.48497 * 109.47396 * 214.99619 * 25 23 21 28 28 H 1.48502 * 109.47015 * 334.99944 * 25 23 21 29 29 C 1.47026 * 125.64614 * 179.97438 * 16 14 12 30 30 H 1.08994 * 109.47544 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47129 * 300.00168 * 1 2 3 32 32 H 1.09000 * 109.47099 * 59.99317 * 1 2 3 33 33 H 1.09004 * 109.47129 * 239.99832 * 2 1 3 34 34 H 1.09000 * 109.47099 * 120.00683 * 2 1 3 35 35 H 1.09001 * 109.51374 * 172.65564 * 5 3 2 36 36 H 1.09003 * 109.51592 * 52.55604 * 5 3 2 37 37 H 1.09003 * 109.47251 * 60.00059 * 9 7 6 38 38 H 1.09000 * 109.47380 * 179.97438 * 9 7 6 39 39 H 1.09001 * 109.47080 * 300.00281 * 9 7 6 40 40 H 1.09005 * 109.68096 * 67.41917 * 10 7 6 41 41 H 1.08999 * 109.68573 * 187.97346 * 10 7 6 42 42 H 1.08998 * 110.36502 * 274.74637 * 17 16 14 43 43 H 1.09007 * 110.36178 * 37.06466 * 17 16 14 44 44 H 1.08997 * 111.19320 * 279.19285 * 18 17 16 45 45 H 1.08988 * 110.94248 * 155.28576 * 18 17 16 46 46 H 0.96695 * 114.00321 * 185.02512 * 20 19 18 47 47 H 0.96997 * 120.00181 * 179.97438 * 24 23 21 48 48 H 1.09003 * 109.88423 * 300.44609 * 29 16 14 49 49 H 1.09000 * 109.87740 * 61.60817 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6003 1.9879 -0.8350 5 6 3.5677 1.4499 -0.1258 6 8 4.1415 0.8974 1.0614 7 6 3.8610 1.6428 2.2486 8 1 4.2116 2.6676 2.1265 9 6 4.5733 0.9962 3.4383 10 6 2.3483 1.6454 2.4974 11 7 1.6767 2.0968 1.2683 12 6 0.7555 3.0801 1.3021 13 8 0.2993 3.5199 0.2673 14 6 0.2961 3.6287 2.6141 15 8 0.6599 3.1106 3.6494 16 7 -0.5224 4.6990 2.6475 17 6 -1.0339 5.4266 1.4718 18 6 -2.3413 6.1013 1.9636 19 6 -1.9562 6.5017 3.4124 20 8 -1.2373 7.7367 3.4214 21 6 -3.1817 6.5901 4.2848 22 1 -4.1617 6.4411 3.8560 23 6 -3.0519 6.8612 5.6305 24 7 -1.8568 6.9336 6.1744 25 14 -4.5738 7.1257 6.6810 26 1 -4.9509 5.8476 7.3365 27 1 -4.2874 8.1486 7.7186 28 1 -5.6929 7.5908 5.8228 29 6 -1.0484 5.3378 3.8628 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9173 2.4740 -0.2566 36 1 3.8651 0.8510 -0.9866 37 1 5.6485 0.9906 3.2588 38 1 4.3594 1.5653 4.3430 39 1 4.2201 -0.0277 3.5606 40 1 2.0159 0.6382 2.7487 41 1 2.1120 2.3254 3.3158 42 1 -0.3143 6.1788 1.1487 43 1 -1.2483 4.7319 0.6596 44 1 -3.1732 5.3971 1.9611 45 1 -2.5750 6.9810 1.3643 46 1 -0.9067 7.9930 4.2932 47 1 -1.7655 7.1247 7.1210 48 1 -1.6282 4.6169 4.4393 49 1 -0.2254 5.7216 4.4657 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327020231.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:30 Heat of formation + Delta-G solvation = -143.288096 kcal Electronic energy + Delta-G solvation = -31999.452792 eV Core-core repulsion = 27734.444001 eV Total energy + Delta-G solvation = -4265.008791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02620 -39.45467 -38.11119 -37.41397 -35.54529 -34.46213 -33.72411 -32.29923 -31.79166 -30.22675 -28.78036 -27.94342 -26.64988 -25.82244 -24.35183 -23.47950 -22.50232 -21.80081 -20.07255 -19.57357 -18.97600 -17.28155 -17.17107 -17.00730 -16.54227 -16.12074 -15.91184 -15.39029 -15.15471 -14.83644 -14.62844 -14.59292 -14.28913 -13.89902 -13.64373 -13.13879 -13.03805 -12.99484 -12.84713 -12.49027 -12.48215 -12.34678 -12.23452 -11.92503 -11.80292 -11.67113 -11.52810 -11.22881 -11.11787 -11.09719 -10.98002 -10.79579 -10.66952 -10.53242 -10.43816 -10.23694 -10.16786 -9.33571 -8.93832 -8.73899 -8.64647 -8.37700 -8.06905 -6.34214 -4.42431 1.68106 2.40568 3.17681 3.26030 3.29780 3.44981 3.49716 3.65488 4.23024 4.37243 4.53237 4.55948 4.79913 4.84854 4.93637 4.94471 5.03150 5.22457 5.23863 5.33801 5.42495 5.44945 5.49502 5.58830 5.67169 5.73336 5.75603 5.80265 5.83659 5.89221 5.96769 5.99131 6.04719 6.16846 6.20464 6.34011 6.47359 6.71695 6.77987 6.80542 6.96279 7.08248 7.16033 7.26485 7.67081 7.74016 7.96341 7.98552 8.34912 8.61495 9.22112 9.30182 10.73289 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.003071 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.820790 B = 9114.578234 C = 9659.217706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.102 3.898 4 H 0.109 0.891 5 C 0.057 3.943 6 O -0.378 6.378 7 C 0.072 3.928 8 H 0.061 0.939 9 C -0.141 4.141 10 C 0.044 3.956 11 N -0.584 5.584 12 C 0.515 3.485 13 O -0.517 6.517 14 C 0.507 3.493 15 O -0.530 6.530 16 N -0.571 5.571 17 C 0.094 3.906 18 C -0.119 4.119 19 C 0.247 3.753 20 O -0.582 6.582 21 C -0.538 4.538 22 H 0.068 0.932 23 C 0.071 3.929 24 N -0.894 5.894 25 Si 0.903 3.097 26 H -0.279 1.279 27 H -0.283 1.283 28 H -0.271 1.271 29 C 0.101 3.899 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.151 0.849 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.380 0.620 47 H 0.270 0.730 48 H 0.074 0.926 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.202 -11.502 -9.752 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.001 4.001 4 H 0.127 0.873 5 C -0.021 4.021 6 O -0.296 6.296 7 C 0.014 3.986 8 H 0.079 0.921 9 C -0.199 4.199 10 C -0.078 4.078 11 N -0.319 5.319 12 C 0.299 3.701 13 O -0.393 6.393 14 C 0.290 3.710 15 O -0.411 6.411 16 N -0.302 5.302 17 C -0.028 4.028 18 C -0.157 4.157 19 C 0.207 3.793 20 O -0.390 6.390 21 C -0.576 4.576 22 H 0.086 0.914 23 C -0.132 4.132 24 N -0.532 5.532 25 Si 0.731 3.269 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.196 1.196 29 C -0.020 4.020 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.230 0.770 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.219 -11.705 -10.227 18.602 hybrid contribution -0.744 0.282 1.261 1.491 sum 9.476 -11.423 -8.966 17.340 Atomic orbital electron populations 1.21725 0.95291 1.01481 1.02233 1.21758 0.96494 0.95132 1.02977 1.22086 0.95919 0.94480 0.87658 0.87316 1.22940 0.91166 0.99490 0.88498 1.87931 1.74389 1.52142 1.15180 1.22582 0.94378 0.95555 0.86086 0.92080 1.21702 1.00604 1.01686 0.95889 1.23577 0.91283 1.04085 0.88830 1.48031 1.39326 1.35453 1.09101 1.20360 0.79712 0.79905 0.90142 1.90671 1.55406 1.58383 1.34803 1.19576 0.81063 0.81466 0.88898 1.90445 1.56434 1.59408 1.34794 1.48779 1.43365 1.26399 1.11703 1.22760 0.96221 0.95759 0.88070 1.22847 0.95432 0.99864 0.97598 1.19522 0.88609 0.80528 0.90659 1.86144 1.75337 1.41074 1.36449 1.21503 0.92910 1.50018 0.93154 0.91385 1.25074 0.96679 0.93583 0.97888 1.69742 1.21971 1.48187 1.13330 0.86388 0.82645 0.78121 0.79779 1.20513 1.20890 1.19595 1.23282 0.98023 0.96451 0.84200 0.92628 0.92920 0.92529 0.90711 0.90996 0.92637 0.87666 0.91637 0.90394 0.91609 0.90734 0.83205 0.91419 0.89094 0.90395 0.90311 0.77001 0.91994 0.90733 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.81 37.16 0.36 -1.28 16 2 C -0.13 -1.25 5.34 -26.73 -0.14 -1.39 16 3 C 0.10 1.14 2.63 -67.36 -0.18 0.97 16 4 H 0.11 1.29 7.07 -51.93 -0.37 0.92 16 5 C 0.06 0.55 6.35 37.31 0.24 0.79 16 6 O -0.38 -4.24 10.12 -35.23 -0.36 -4.60 16 7 C 0.07 0.81 3.40 -26.58 -0.09 0.72 16 8 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 9 C -0.14 -1.30 9.57 37.16 0.36 -0.94 16 10 C 0.04 0.57 5.06 -3.53 -0.02 0.55 16 11 N -0.58 -8.11 2.26 -165.16 -0.37 -8.48 16 12 C 0.52 8.67 7.44 -11.59 -0.09 8.58 16 13 O -0.52 -9.15 13.24 5.50 0.07 -9.07 16 14 C 0.51 9.84 7.78 -11.59 -0.09 9.75 16 15 O -0.53 -10.79 13.50 5.49 0.07 -10.72 16 16 N -0.57 -11.79 3.32 -170.88 -0.57 -12.36 16 17 C 0.09 1.79 6.18 -2.41 -0.01 1.77 16 18 C -0.12 -2.41 6.24 -24.46 -0.15 -2.57 16 19 C 0.25 5.86 0.85 -89.94 -0.08 5.78 16 20 O -0.58 -14.24 13.07 -35.23 -0.46 -14.70 16 21 C -0.54 -13.76 8.11 -34.44 -0.28 -14.04 16 22 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 23 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 24 N -0.89 -23.07 11.01 55.43 0.61 -22.46 16 25 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 29 C 0.10 2.36 5.20 -3.06 -0.02 2.35 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.70 7.54 -51.93 -0.39 0.31 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.77 7.12 -51.93 -0.37 0.40 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.94 7.51 -51.93 -0.39 0.55 16 41 H 0.15 2.30 4.40 -54.45 -0.24 2.06 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.64 5.98 -51.93 -0.31 1.33 16 44 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 45 H 0.08 1.51 8.14 -51.94 -0.42 1.09 16 46 H 0.38 9.41 7.56 45.56 0.34 9.76 16 47 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 48 H 0.07 1.89 7.81 -51.93 -0.41 1.48 16 49 H 0.07 1.81 7.89 -51.93 -0.41 1.40 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -27.71 383.18 -7.68 -35.39 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.15 Total: 13.45 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.28 Total: 12.76 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.33 Total: -43.31 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.67 Total: -39.09 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.71 -7.68 -35.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327020231.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.895 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds