Wall clock time and date at job start Sat Apr 11 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 H 1.09001 * 109.46625 * 55.00298 * 3 2 1 5 5 N 1.46498 * 109.47423 * 295.00133 * 3 2 1 6 6 C 1.34776 * 119.99936 * 84.99935 * 5 3 2 7 7 O 1.21352 * 119.99933 * 0.02562 * 6 5 3 8 8 C 1.49446 * 120.00053 * 180.02562 * 6 5 3 9 9 O 1.21345 * 120.00177 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00053 * 179.97438 * 8 6 5 11 11 C 1.47023 * 125.64930 * 0.02635 * 10 8 6 12 12 C 1.54323 * 107.27539 * 181.02363 * 11 10 8 13 13 C 1.55163 * 102.93894 * 22.18936 * 12 11 10 14 14 O 1.42900 * 111.00414 * 82.57348 * 13 12 11 15 15 C 1.50705 * 111.00127 * 206.39002 * 13 12 11 16 16 H 1.07997 * 120.00096 * 354.75142 * 15 13 12 17 17 C 1.37879 * 119.99509 * 174.75664 * 15 13 12 18 18 N 1.31510 * 120.00402 * 4.92081 * 17 15 13 19 19 Si 1.86801 * 119.99383 * 184.92435 * 17 15 13 20 20 H 1.48506 * 109.47330 * 95.00172 * 19 17 15 21 21 H 1.48500 * 109.46886 * 214.99422 * 19 17 15 22 22 H 1.48495 * 109.47413 * 334.99570 * 19 17 15 23 23 C 1.47425 * 125.64853 * 179.71413 * 10 8 6 24 24 C 1.53001 * 109.47141 * 175.00073 * 3 2 1 25 25 H 1.09004 * 110.27461 * 299.36529 * 24 3 2 26 26 C 1.55494 * 110.36878 * 177.25949 * 24 3 2 27 27 C 1.55301 * 100.69911 * 204.61134 * 26 24 3 28 28 C 1.54386 * 102.43576 * 34.12360 * 27 26 24 29 29 O 1.43239 * 107.58692 * 338.54730 * 28 27 26 30 30 H 1.08997 * 109.47452 * 299.99208 * 1 2 3 31 31 H 1.09004 * 109.47739 * 59.99863 * 1 2 3 32 32 H 1.09002 * 109.47285 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47452 * 240.00792 * 2 1 3 34 34 H 1.08995 * 109.47582 * 120.00242 * 2 1 3 35 35 H 0.96999 * 120.00136 * 264.99545 * 5 3 2 36 36 H 1.09003 * 109.87784 * 300.43599 * 11 10 8 37 37 H 1.08999 * 109.88353 * 61.59929 * 11 10 8 38 38 H 1.08993 * 110.72575 * 140.54964 * 12 11 10 39 39 H 1.09003 * 110.72139 * 263.83078 * 12 11 10 40 40 H 0.96701 * 113.99619 * 179.97438 * 14 13 12 41 41 H 0.96999 * 119.99875 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.36862 * 274.74695 * 23 10 8 43 43 H 1.09000 * 110.36615 * 37.07137 * 23 10 8 44 44 H 1.09000 * 111.33886 * 86.73603 * 26 24 3 45 45 H 1.09004 * 111.14795 * 322.40625 * 26 24 3 46 46 H 1.09005 * 110.84345 * 275.83756 * 27 26 24 47 47 H 1.08997 * 110.85628 * 152.42025 * 27 26 24 48 48 H 1.08999 * 109.82860 * 98.06033 * 28 27 26 49 49 H 1.08999 * 109.83442 * 219.03420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8419 5 7 1.6523 2.0976 -1.2518 6 6 0.4350 2.6645 -1.3668 7 8 -0.3398 2.6327 -0.4334 8 6 0.0394 3.3322 -2.6440 9 8 0.8143 3.3644 -3.5772 10 7 -1.1781 3.8986 -2.7593 11 6 -2.2099 3.9327 -1.7124 12 6 -3.4376 4.6581 -2.3025 13 6 -3.2368 4.4928 -3.8322 14 8 -3.7089 3.2191 -4.2761 15 6 -3.9096 5.6089 -4.5890 16 1 -4.5113 6.3336 -4.0607 17 6 -3.7571 5.7046 -5.9560 18 7 -3.1059 4.7693 -6.6122 19 14 -4.4756 7.1631 -6.8759 20 1 -3.4317 8.2061 -7.0427 21 1 -4.9508 6.7206 -8.2114 22 1 -5.6152 7.7219 -6.1052 23 6 -1.6934 4.5923 -3.9537 24 6 3.5647 1.4444 0.1257 25 1 3.8674 0.9695 1.0590 26 6 4.1115 2.8985 0.0584 27 6 5.5588 2.6394 -0.4417 28 6 5.3763 1.4196 -1.3703 29 8 4.1581 0.7672 -0.9935 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2718 2.1233 -1.9977 36 1 -2.4817 2.9166 -1.4267 37 1 -1.8392 4.4776 -0.8442 38 1 -4.3612 4.1772 -1.9807 39 1 -3.4332 5.7121 -2.0247 40 1 -3.6046 3.0703 -5.2258 41 1 -2.9990 4.8365 -7.5739 42 1 -1.3769 5.6353 -3.9528 43 1 -1.3517 4.0920 -4.8598 44 1 4.1140 3.3672 1.0425 45 1 3.5495 3.4972 -0.6584 46 1 6.2194 2.3976 0.3910 47 1 5.9366 3.4973 -0.9978 48 1 5.3134 1.7503 -2.4070 49 1 6.2153 0.7343 -1.2498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329351059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:48 Heat of formation + Delta-G solvation = -164.384902 kcal Electronic energy + Delta-G solvation = -31479.471219 eV Core-core repulsion = 27213.547601 eV Total energy + Delta-G solvation = -4265.923617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73219 -39.70083 -38.42188 -37.15727 -35.76218 -34.23108 -32.53661 -32.21639 -32.16553 -30.20250 -30.07767 -27.92373 -26.36327 -25.54374 -23.78984 -22.52483 -22.02377 -21.62440 -20.41076 -19.83203 -19.47980 -17.45786 -17.26009 -17.09837 -16.36318 -16.19089 -15.93313 -15.54013 -15.15097 -14.85085 -14.61340 -14.43027 -14.15629 -13.72149 -13.53951 -13.41442 -13.04858 -12.92508 -12.78846 -12.69256 -12.42539 -12.25370 -12.07882 -11.65507 -11.64630 -11.52162 -11.45787 -11.20315 -11.08608 -11.03397 -10.89709 -10.77853 -10.76327 -10.56019 -10.48867 -10.20133 -9.85612 -9.38359 -9.14121 -9.01974 -8.69681 -8.40654 -7.87397 -6.31638 -4.40719 1.84533 2.68351 3.19081 3.27339 3.30196 3.42741 3.65503 3.93222 4.10501 4.24445 4.27801 4.54103 4.71797 4.78977 4.87489 4.89293 4.96726 5.04955 5.14538 5.35466 5.39698 5.44940 5.48891 5.50463 5.58059 5.61092 5.81058 5.81414 5.84917 5.85987 5.99027 6.06379 6.16385 6.27906 6.41567 6.47695 6.52256 6.69000 6.73624 6.80514 6.84986 7.17728 7.30851 7.35614 7.71533 7.91864 7.99752 8.09465 8.48406 8.63708 9.28217 9.42661 10.75672 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002797 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.831862 B =10007.074732 C =10734.578227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.130 4.130 3 C 0.148 3.852 4 H 0.102 0.898 5 N -0.696 5.696 6 C 0.510 3.490 7 O -0.513 6.513 8 C 0.506 3.494 9 O -0.539 6.539 10 N -0.573 5.573 11 C 0.113 3.887 12 C -0.122 4.122 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.538 4.538 16 H 0.069 0.931 17 C 0.070 3.930 18 N -0.893 5.893 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.091 3.909 24 C 0.073 3.927 25 H 0.086 0.914 26 C -0.155 4.155 27 C -0.156 4.156 28 C 0.049 3.951 29 O -0.374 6.374 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.385 0.615 41 H 0.271 0.729 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.822 -5.560 13.855 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.120 0.880 5 N -0.351 5.351 6 C 0.292 3.708 7 O -0.388 6.388 8 C 0.288 3.712 9 O -0.418 6.418 10 N -0.305 5.305 11 C -0.010 4.010 12 C -0.160 4.160 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.576 4.576 16 H 0.087 0.913 17 C -0.133 4.133 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.030 4.030 24 C 0.015 3.985 25 H 0.104 0.896 26 C -0.193 4.193 27 C -0.194 4.194 28 C -0.028 4.028 29 O -0.293 6.293 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.236 0.764 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.558 -5.896 14.397 21.306 hybrid contribution 0.361 1.015 -1.445 1.802 sum 14.919 -4.881 12.952 20.351 Atomic orbital electron populations 1.21825 0.94655 1.00840 1.03098 1.21885 0.96985 0.95251 1.02747 1.21268 0.92226 0.94407 0.87772 0.88031 1.45709 1.16309 1.56027 1.17030 1.20339 0.82345 0.79341 0.88779 1.90729 1.50394 1.57711 1.39976 1.19628 0.82458 0.81116 0.87975 1.90721 1.50887 1.59968 1.40234 1.48623 1.12545 1.51687 1.17677 1.22129 0.88056 1.01244 0.89547 1.22719 0.96425 0.99894 0.96980 1.19655 0.87040 0.83283 0.89207 1.86100 1.85673 1.36903 1.30510 1.21496 1.31860 1.11817 0.92449 0.91322 1.25098 0.94124 0.96430 0.97632 1.69632 1.41307 1.33072 1.09209 0.86375 0.79346 0.82095 0.79029 1.20438 1.20988 1.19623 1.23493 0.97841 0.95507 0.86119 1.23432 0.92174 0.92087 0.90763 0.89609 1.23437 0.95749 0.96902 1.03194 1.23112 0.97379 0.98934 0.99937 1.23162 0.87177 0.93525 0.98906 1.88454 1.37714 1.53587 1.49546 0.92140 0.92424 0.93424 0.90951 0.91238 0.74976 0.91153 0.91797 0.90561 0.90434 0.76432 0.91885 0.91534 0.89452 0.89601 0.89628 0.90579 0.89845 0.90932 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.51 37.15 0.32 -1.56 16 2 C -0.13 -1.41 5.42 -26.73 -0.14 -1.56 16 3 C 0.15 1.58 2.18 -67.93 -0.15 1.44 16 4 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 5 N -0.70 -9.30 4.05 -54.24 -0.22 -9.52 16 6 C 0.51 8.47 6.42 -11.59 -0.07 8.40 16 7 O -0.51 -8.77 11.26 5.49 0.06 -8.71 16 8 C 0.51 10.20 7.91 -11.59 -0.09 10.11 16 9 O -0.54 -11.92 16.73 5.50 0.09 -11.83 16 10 N -0.57 -12.14 3.32 -170.89 -0.57 -12.71 16 11 C 0.11 2.17 5.49 -3.06 -0.02 2.15 16 12 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16 13 C 0.25 6.02 0.89 -89.50 -0.08 5.94 16 14 O -0.58 -14.98 13.20 -35.23 -0.47 -15.44 16 15 C -0.54 -13.83 8.26 -34.44 -0.28 -14.11 16 16 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 17 C 0.07 1.81 5.26 -17.82 -0.09 1.72 16 18 N -0.89 -23.50 10.71 55.43 0.59 -22.91 16 19 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.09 2.17 5.52 -2.41 -0.01 2.16 16 24 C 0.07 0.64 3.20 -25.40 -0.08 0.56 16 25 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 26 C -0.16 -1.22 6.54 -24.19 -0.16 -1.37 16 27 C -0.16 -1.03 7.00 -24.78 -0.17 -1.20 16 28 C 0.05 0.39 7.80 37.88 0.30 0.68 16 29 O -0.37 -3.81 10.06 -35.23 -0.35 -4.17 16 30 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 31 H 0.06 0.90 5.65 -51.93 -0.29 0.60 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.86 7.91 -51.93 -0.41 0.45 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.41 5.61 7.53 -40.82 -0.31 5.30 16 36 H 0.07 1.37 7.58 -51.93 -0.39 0.98 16 37 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 40 H 0.38 10.16 7.18 45.56 0.33 10.48 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.07 1.60 8.04 -51.93 -0.42 1.18 16 43 H 0.09 2.31 7.50 -51.93 -0.39 1.92 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.82 7.16 -51.93 -0.37 0.45 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -28.75 385.80 -8.19 -36.94 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -7.22 Total: 16.77 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -0.90 Total: 10.71 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.19 Total: -45.14 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.67 Total: -40.15 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.75 -8.19 -36.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329351059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.449 kcal (2) G-P(sol) polarization free energy of solvation -28.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds