Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 H 1.09001 * 109.46625 * 55.00298 * 3 2 1 5 5 N 1.46498 * 109.47423 * 295.00133 * 3 2 1 6 6 C 1.34776 * 119.99936 * 84.99935 * 5 3 2 7 7 O 1.21352 * 119.99933 * 0.02562 * 6 5 3 8 8 C 1.49446 * 120.00053 * 180.02562 * 6 5 3 9 9 O 1.21345 * 120.00177 * 359.97438 * 8 6 5 10 10 N 1.34776 * 120.00053 * 179.97438 * 8 6 5 11 11 C 1.47023 * 125.64930 * 0.02635 * 10 8 6 12 12 C 1.54323 * 107.27539 * 181.02363 * 11 10 8 13 13 C 1.55163 * 102.93894 * 22.18936 * 12 11 10 14 14 O 1.42900 * 111.00414 * 82.57348 * 13 12 11 15 15 C 1.50705 * 111.00127 * 206.39002 * 13 12 11 16 16 H 1.07997 * 120.00096 * 354.75142 * 15 13 12 17 17 C 1.37879 * 119.99509 * 174.75664 * 15 13 12 18 18 N 1.31510 * 120.00402 * 4.92081 * 17 15 13 19 19 Si 1.86801 * 119.99383 * 184.92435 * 17 15 13 20 20 H 1.48506 * 109.47330 * 95.00172 * 19 17 15 21 21 H 1.48500 * 109.46886 * 214.99422 * 19 17 15 22 22 H 1.48495 * 109.47413 * 334.99570 * 19 17 15 23 23 C 1.47425 * 125.64853 * 179.71413 * 10 8 6 24 24 C 1.53001 * 109.47141 * 175.00073 * 3 2 1 25 25 H 1.09004 * 110.27461 * 299.36529 * 24 3 2 26 26 C 1.55494 * 110.36878 * 177.25949 * 24 3 2 27 27 C 1.55301 * 100.69911 * 204.61134 * 26 24 3 28 28 C 1.54386 * 102.43576 * 34.12360 * 27 26 24 29 29 O 1.43239 * 107.58692 * 338.54730 * 28 27 26 30 30 H 1.08997 * 109.47452 * 299.99208 * 1 2 3 31 31 H 1.09004 * 109.47739 * 59.99863 * 1 2 3 32 32 H 1.09002 * 109.47285 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47452 * 240.00792 * 2 1 3 34 34 H 1.08995 * 109.47582 * 120.00242 * 2 1 3 35 35 H 0.96999 * 120.00136 * 264.99545 * 5 3 2 36 36 H 1.09003 * 109.87784 * 300.43599 * 11 10 8 37 37 H 1.08999 * 109.88353 * 61.59929 * 11 10 8 38 38 H 1.08993 * 110.72575 * 140.54964 * 12 11 10 39 39 H 1.09003 * 110.72139 * 263.83078 * 12 11 10 40 40 H 0.96701 * 113.99619 * 179.97438 * 14 13 12 41 41 H 0.96999 * 119.99875 * 179.97438 * 18 17 15 42 42 H 1.09001 * 110.36862 * 274.74695 * 23 10 8 43 43 H 1.09000 * 110.36615 * 37.07137 * 23 10 8 44 44 H 1.09000 * 111.33886 * 86.73603 * 26 24 3 45 45 H 1.09004 * 111.14795 * 322.40625 * 26 24 3 46 46 H 1.09005 * 110.84345 * 275.83756 * 27 26 24 47 47 H 1.08997 * 110.85628 * 152.42025 * 27 26 24 48 48 H 1.08999 * 109.82860 * 98.06033 * 28 27 26 49 49 H 1.08999 * 109.83442 * 219.03420 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8419 5 7 1.6523 2.0976 -1.2518 6 6 0.4350 2.6645 -1.3668 7 8 -0.3398 2.6327 -0.4334 8 6 0.0394 3.3322 -2.6440 9 8 0.8143 3.3644 -3.5772 10 7 -1.1781 3.8986 -2.7593 11 6 -2.2099 3.9327 -1.7124 12 6 -3.4376 4.6581 -2.3025 13 6 -3.2368 4.4928 -3.8322 14 8 -3.7089 3.2191 -4.2761 15 6 -3.9096 5.6089 -4.5890 16 1 -4.5113 6.3336 -4.0607 17 6 -3.7571 5.7046 -5.9560 18 7 -3.1059 4.7693 -6.6122 19 14 -4.4756 7.1631 -6.8759 20 1 -3.4317 8.2061 -7.0427 21 1 -4.9508 6.7206 -8.2114 22 1 -5.6152 7.7219 -6.1052 23 6 -1.6934 4.5923 -3.9537 24 6 3.5647 1.4444 0.1257 25 1 3.8674 0.9695 1.0590 26 6 4.1115 2.8985 0.0584 27 6 5.5588 2.6394 -0.4417 28 6 5.3763 1.4196 -1.3703 29 8 4.1581 0.7672 -0.9935 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.2718 2.1233 -1.9977 36 1 -2.4817 2.9166 -1.4267 37 1 -1.8392 4.4776 -0.8442 38 1 -4.3612 4.1772 -1.9807 39 1 -3.4332 5.7121 -2.0247 40 1 -3.6046 3.0703 -5.2258 41 1 -2.9990 4.8365 -7.5739 42 1 -1.3769 5.6353 -3.9528 43 1 -1.3517 4.0920 -4.8598 44 1 4.1140 3.3672 1.0425 45 1 3.5495 3.4972 -0.6584 46 1 6.2194 2.3976 0.3910 47 1 5.9366 3.4973 -0.9978 48 1 5.3134 1.7503 -2.4070 49 1 6.2153 0.7343 -1.2498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329351059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = -185.273220 kcal Electronic energy + Delta-G solvation = -31480.377004 eV Core-core repulsion = 27213.547601 eV Total energy + Delta-G solvation = -4266.829403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99405 -40.78184 -39.77757 -38.87896 -36.88386 -36.00079 -34.21457 -33.42582 -32.99931 -31.94884 -30.85534 -29.72431 -27.81162 -26.80700 -25.34335 -23.59585 -23.16239 -22.28539 -21.56583 -21.36875 -20.97376 -19.19393 -18.80304 -18.23978 -17.48929 -17.36080 -17.15995 -17.00853 -16.56949 -16.27926 -16.12709 -15.68665 -15.31282 -15.01084 -14.81097 -14.68960 -14.40886 -14.24385 -14.06413 -13.95891 -13.64117 -13.51184 -13.34506 -13.25133 -12.87640 -12.72186 -12.66927 -12.55252 -12.40008 -12.34651 -12.22250 -12.19118 -12.12136 -11.83618 -11.69458 -11.66402 -11.23139 -10.74598 -10.58373 -10.49771 -10.32810 -10.15691 -9.63268 -8.27176 -6.43688 0.37276 1.29017 1.43261 1.45571 1.55496 2.14830 2.36866 2.52352 2.79861 2.99352 3.32473 3.43585 3.63167 3.77226 3.98968 4.05831 4.07518 4.10725 4.14187 4.21486 4.30827 4.32693 4.40236 4.54223 4.64551 4.66019 4.73661 4.81795 4.87503 4.91336 4.94934 4.95125 5.01957 5.03470 5.05870 5.14648 5.17244 5.23692 5.32236 5.36493 5.43922 5.46394 5.73780 5.97891 6.03475 6.09196 6.37899 6.62293 6.68220 6.95529 7.27206 7.36837 8.78829 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018942 B = 0.002797 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.831862 B =10007.074732 C =10734.578227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C 0.145 3.855 4 H 0.107 0.893 5 N -0.680 5.680 6 C 0.520 3.480 7 O -0.517 6.517 8 C 0.498 3.502 9 O -0.566 6.566 10 N -0.581 5.581 11 C 0.121 3.879 12 C -0.116 4.116 13 C 0.233 3.767 14 O -0.590 6.590 15 C -0.556 4.556 16 H 0.071 0.929 17 C 0.027 3.973 18 N -0.916 5.916 19 Si 0.966 3.034 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.265 1.265 23 C 0.105 3.895 24 C 0.077 3.923 25 H 0.113 0.887 26 C -0.156 4.156 27 C -0.149 4.149 28 C 0.042 3.958 29 O -0.395 6.395 30 H 0.059 0.941 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.098 0.902 35 H 0.412 0.588 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.377 0.623 41 H 0.271 0.729 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.826 -5.380 16.095 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.041 3.959 4 H 0.125 0.875 5 N -0.334 5.334 6 C 0.300 3.700 7 O -0.393 6.393 8 C 0.281 3.719 9 O -0.446 6.446 10 N -0.313 5.313 11 C -0.001 4.001 12 C -0.153 4.153 13 C 0.192 3.808 14 O -0.399 6.399 15 C -0.594 4.594 16 H 0.090 0.910 17 C -0.174 4.174 18 N -0.555 5.555 19 Si 0.791 3.209 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.017 4.017 24 C 0.019 3.981 25 H 0.131 0.869 26 C -0.194 4.194 27 C -0.186 4.186 28 C -0.034 4.034 29 O -0.315 6.315 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.249 0.751 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.227 0.773 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.081 0.919 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.581 -5.732 16.678 23.533 hybrid contribution 0.097 0.897 -2.154 2.335 sum 15.678 -4.835 14.524 21.912 Atomic orbital electron populations 1.21779 0.96101 1.00881 1.01364 1.21861 0.95512 0.95355 1.03585 1.21552 0.94093 0.94053 0.86189 0.87489 1.45718 1.14795 1.54756 1.18093 1.19609 0.83439 0.79848 0.87137 1.90723 1.50766 1.58368 1.39478 1.20406 0.81752 0.80502 0.89195 1.90694 1.51561 1.60736 1.41636 1.48670 1.13438 1.51914 1.17283 1.22151 0.87136 1.01339 0.89446 1.22733 0.97343 1.01221 0.94046 1.19909 0.86979 0.82339 0.91546 1.86093 1.85900 1.37989 1.29895 1.21780 1.32196 1.12350 0.93037 0.91043 1.25838 0.94435 0.98662 0.98466 1.69742 1.42045 1.34408 1.09304 0.85413 0.78713 0.79071 0.77666 1.20177 1.20987 1.18940 1.23075 0.97954 0.94743 0.85966 1.23517 0.90319 0.92852 0.91405 0.86939 1.23438 0.96169 0.96137 1.03634 1.23101 0.96911 0.98365 1.00219 1.23293 0.86856 0.94448 0.98820 1.88432 1.38670 1.54221 1.50225 0.92202 0.95651 0.92586 0.92062 0.88347 0.75097 0.91349 0.89471 0.89753 0.88819 0.77320 0.91946 0.92382 0.92980 0.87810 0.91811 0.88659 0.89497 0.91883 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.51 71.98 0.61 -2.89 16 2 C -0.12 -2.46 5.42 30.59 0.17 -2.30 16 3 C 0.14 2.82 2.18 44.99 0.10 2.92 16 4 H 0.11 2.05 7.58 -2.39 -0.02 2.03 16 5 N -0.68 -17.83 4.05 -443.87 -1.80 -19.62 16 6 C 0.52 17.12 6.42 87.27 0.56 17.68 16 7 O -0.52 -17.21 11.26 -3.25 -0.04 -17.24 16 8 C 0.50 20.45 7.91 87.27 0.69 21.15 16 9 O -0.57 -25.88 16.73 -3.23 -0.05 -25.93 16 10 N -0.58 -24.97 3.32 -812.93 -2.70 -27.68 16 11 C 0.12 4.56 5.49 86.73 0.48 5.04 16 12 C -0.12 -4.62 6.13 31.78 0.19 -4.42 16 13 C 0.23 11.41 0.89 -10.07 -0.01 11.40 16 14 O -0.59 -31.11 13.20 -148.98 -1.97 -33.08 16 15 C -0.56 -28.71 8.26 25.60 0.21 -28.50 16 16 H 0.07 3.57 7.79 -2.91 -0.02 3.54 16 17 C 0.03 1.40 5.26 84.66 0.45 1.84 16 18 N -0.92 -49.39 10.71 21.45 0.23 -49.16 16 19 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 20 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 C 0.10 5.15 5.52 86.93 0.48 5.63 16 24 C 0.08 1.14 3.20 31.45 0.10 1.24 16 25 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 26 C -0.16 -2.10 6.54 32.24 0.21 -1.89 16 27 C -0.15 -1.61 7.00 31.86 0.22 -1.38 16 28 C 0.04 0.60 7.80 72.45 0.56 1.17 16 29 O -0.40 -7.40 10.06 -148.98 -1.50 -8.90 16 30 H 0.06 1.45 7.85 -2.39 -0.02 1.43 16 31 H 0.02 0.77 5.65 -2.38 -0.01 0.75 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.37 7.91 -2.39 -0.02 1.35 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 11.21 7.53 -92.71 -0.70 10.52 16 36 H 0.07 2.61 7.58 -2.39 -0.02 2.60 16 37 H 0.09 2.90 7.69 -2.39 -0.02 2.88 16 38 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 40 H 0.38 20.72 7.18 -74.06 -0.53 20.19 16 41 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 42 H 0.06 2.88 8.04 -2.39 -0.02 2.86 16 43 H 0.05 2.90 7.50 -2.39 -0.02 2.88 16 44 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.15 7.16 -2.39 -0.02 1.13 16 46 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -62.97 385.80 -1.03 -64.00 By element: Atomic # 1 Polarization: 47.88 SS G_CDS: -0.26 Total: 47.62 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 5.03 Total: 26.69 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.27 Total: -96.46 kcal Atomic # 8 Polarization: -81.59 SS G_CDS: -3.56 Total: -85.15 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -62.97 -1.03 -64.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329351059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.278 kcal (2) G-P(sol) polarization free energy of solvation -62.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds