Wall clock time and date at job start Sat Apr 11 2020 06:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47291 * 2 1 4 4 C 1.52999 * 109.46880 * 119.99432 * 2 1 3 5 5 H 1.09006 * 109.50858 * 59.90375 * 4 2 1 6 6 C 1.53298 * 109.51313 * 179.97438 * 4 2 1 7 7 N 1.47154 * 108.38386 * 172.22815 * 6 4 2 8 8 C 1.34773 * 120.97700 * 129.44584 * 7 6 4 9 9 O 1.21348 * 120.00413 * 1.35614 * 8 7 6 10 10 C 1.49456 * 119.99970 * 181.35704 * 8 7 6 11 11 O 1.21348 * 119.99513 * 353.58302 * 10 8 7 12 12 N 1.34767 * 120.00286 * 173.57625 * 10 8 7 13 13 C 1.47424 * 125.65015 * 359.97438 * 12 10 8 14 14 C 1.54905 * 104.83436 * 155.90515 * 13 12 10 15 15 C 1.55155 * 101.58427 * 37.01168 * 14 13 12 16 16 O 1.42905 * 110.72149 * 83.03493 * 15 14 13 17 17 C 1.50701 * 110.72623 * 206.13532 * 15 14 13 18 18 H 1.08000 * 119.99605 * 0.68899 * 17 15 14 19 19 C 1.37872 * 120.00333 * 180.96718 * 17 15 14 20 20 N 1.31520 * 119.99758 * 353.46509 * 19 17 15 21 21 Si 1.86796 * 120.00103 * 173.46940 * 19 17 15 22 22 H 1.48497 * 109.47647 * 94.99131 * 21 19 17 23 23 H 1.48510 * 109.47009 * 214.99381 * 21 19 17 24 24 H 1.48503 * 109.47118 * 334.98832 * 21 19 17 25 25 C 1.47318 * 125.61780 * 180.20233 * 12 10 8 26 26 C 1.47144 * 118.03494 * 309.71668 * 7 6 4 27 27 C 1.52880 * 108.61110 * 50.22970 * 26 7 6 28 28 O 1.42961 * 109.29605 * 307.93320 * 27 26 7 29 29 H 1.09005 * 109.47448 * 300.00374 * 1 2 3 30 30 H 1.09002 * 109.46997 * 60.00192 * 1 2 3 31 31 H 1.09000 * 109.47387 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47502 * 239.99978 * 2 1 3 33 33 H 1.08999 * 109.47328 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46944 * 299.99841 * 3 2 1 35 35 H 1.08997 * 109.46865 * 59.99588 * 3 2 1 36 36 H 1.09002 * 109.67789 * 52.50463 * 6 4 2 37 37 H 1.08994 * 109.71237 * 291.97163 * 6 4 2 38 38 H 1.09003 * 110.36752 * 37.06950 * 13 12 10 39 39 H 1.09004 * 110.36720 * 274.74539 * 13 12 10 40 40 H 1.09001 * 111.01041 * 278.93557 * 14 13 12 41 41 H 1.08999 * 111.00932 * 155.08505 * 14 13 12 42 42 H 0.96696 * 113.99963 * 182.44935 * 16 15 14 43 43 H 0.97001 * 119.99922 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.06308 * 61.67722 * 25 12 10 45 45 H 1.09009 * 109.85202 * 300.42376 * 25 12 10 46 46 H 1.09009 * 109.68046 * 170.00999 * 26 7 6 47 47 H 1.09005 * 109.68441 * 290.55770 * 26 7 6 48 48 H 1.08995 * 109.58197 * 187.91766 * 27 26 7 49 49 H 1.08997 * 109.40523 * 67.83822 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6754 -1.7485 1.2509 6 6 3.5729 -0.7223 1.2500 7 7 4.0360 -1.2506 2.5430 8 6 4.9507 -2.2387 2.6012 9 8 5.4231 -2.6892 1.5782 10 6 5.3831 -2.7797 3.9255 11 8 5.0007 -2.2536 4.9500 12 7 6.1976 -3.8519 3.9821 13 6 6.7343 -4.5854 2.8213 14 6 8.0254 -5.2637 3.3432 15 6 7.6110 -5.6535 4.7867 16 8 6.8920 -6.8885 4.7902 17 6 8.8189 -5.7395 5.6836 18 1 9.8014 -5.5284 5.2879 19 6 8.6706 -6.0932 7.0079 20 7 7.4674 -6.2302 7.5211 21 14 10.1783 -6.3779 8.0732 22 1 10.5061 -5.1312 8.8105 23 1 9.9008 -7.4680 9.0428 24 1 11.3269 -6.7609 7.2133 25 6 6.6950 -4.4875 5.2145 26 6 3.4664 -0.6723 3.7704 27 6 1.9426 -0.6700 3.6470 28 8 1.5691 -0.0441 2.4172 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9407 0.2950 1.1161 37 1 3.9404 -1.3549 0.4421 38 1 6.9695 -3.8945 2.0117 39 1 6.0204 -5.3371 2.4844 40 1 8.8594 -4.5619 3.3523 41 1 8.2677 -6.1482 2.7541 42 1 6.5776 -7.1581 5.6640 43 1 7.3630 -6.4787 8.4529 44 1 5.8597 -4.8684 5.8021 45 1 7.2637 -3.7650 5.8001 46 1 3.7630 -1.2723 4.6308 47 1 3.8235 0.3501 3.8946 48 1 1.5094 -0.1194 4.4820 49 1 1.5767 -1.6966 3.6589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329451814.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:02 Heat of formation + Delta-G solvation = -140.025548 kcal Electronic energy + Delta-G solvation = -31350.389101 eV Core-core repulsion = 27085.521785 eV Total energy + Delta-G solvation = -4264.867317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93647 -39.51699 -38.19652 -37.47193 -35.70680 -34.93272 -34.13467 -32.25423 -30.60154 -30.26014 -28.40689 -27.96953 -27.33975 -25.87434 -24.61914 -23.78214 -22.55669 -21.30503 -20.08045 -19.65882 -19.12339 -17.29539 -17.11477 -16.92795 -16.48042 -16.06657 -15.80827 -15.49279 -15.28261 -15.19367 -14.77929 -14.41577 -14.24806 -14.17264 -13.59097 -13.31772 -13.10471 -13.03342 -12.96324 -12.85974 -12.51161 -12.42296 -12.21375 -11.92567 -11.77807 -11.58066 -11.40535 -11.13534 -11.11708 -10.98099 -10.94778 -10.88202 -10.67764 -10.54936 -10.43831 -10.27024 -10.16136 -9.36906 -8.87553 -8.73644 -8.69876 -8.38361 -8.11588 -6.35942 -4.43638 1.65279 2.39688 3.16953 3.25359 3.29112 3.42909 3.47770 3.64899 4.21944 4.33264 4.45311 4.54208 4.71232 4.82355 4.87394 4.91670 5.04167 5.17676 5.25799 5.33409 5.37755 5.43279 5.45862 5.54935 5.63518 5.69415 5.74147 5.76560 5.79270 5.82644 5.94001 5.98520 6.04600 6.12843 6.18301 6.29132 6.45387 6.71144 6.75354 6.78304 6.96326 7.05338 7.14101 7.24573 7.66553 7.70595 7.94117 7.96818 8.31445 8.59685 9.24544 9.30875 10.71741 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026624 B = 0.002525 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.428556 B =11084.777333 C =11514.426145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.148 4.148 4 C 0.084 3.916 5 H 0.062 0.938 6 C 0.076 3.924 7 N -0.589 5.589 8 C 0.513 3.487 9 O -0.518 6.518 10 C 0.510 3.490 11 O -0.529 6.529 12 N -0.570 5.570 13 C 0.094 3.906 14 C -0.120 4.120 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.271 1.271 25 C 0.098 3.902 26 C 0.020 3.980 27 C 0.049 3.951 28 O -0.375 6.375 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.383 0.617 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.166 0.834 47 H 0.072 0.928 48 H 0.107 0.893 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.396 11.552 -11.427 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.205 4.205 4 C 0.025 3.975 5 H 0.080 0.920 6 C -0.046 4.046 7 N -0.323 5.323 8 C 0.297 3.703 9 O -0.394 6.394 10 C 0.293 3.707 11 O -0.410 6.410 12 N -0.300 5.300 13 C -0.028 4.028 14 C -0.158 4.158 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.196 1.196 25 C -0.023 4.023 26 C -0.101 4.101 27 C -0.028 4.028 28 O -0.293 6.293 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.234 0.766 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.182 0.818 47 H 0.091 0.909 48 H 0.125 0.875 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.424 11.750 -11.920 20.264 hybrid contribution 0.687 -0.293 1.336 1.530 sum -10.737 11.457 -10.584 18.936 Atomic orbital electron populations 1.21752 0.94267 1.01807 1.02200 1.21125 0.96871 0.97050 0.95418 1.21856 1.00925 0.95455 1.02236 1.22476 0.92121 0.96188 0.86694 0.91971 1.22511 0.94888 1.00675 0.86524 1.47962 1.40631 1.35713 1.08031 1.20335 0.79921 0.79881 0.90188 1.90678 1.54053 1.58612 1.36063 1.19555 0.80870 0.81470 0.88808 1.90278 1.55788 1.58863 1.36076 1.48839 1.43247 1.26205 1.11743 1.22724 0.96092 0.95665 0.88300 1.22818 0.95510 0.99897 0.97544 1.19511 0.88467 0.80576 0.90741 1.86119 1.75756 1.40753 1.36549 1.21522 0.93433 1.48088 0.94474 0.91343 1.25080 0.96648 0.93712 0.97822 1.69675 1.21396 1.47259 1.15082 0.86372 0.82532 0.78079 0.79853 1.20508 1.20875 1.19590 1.23413 0.98468 0.96589 0.83816 1.23819 0.93740 1.02134 0.90414 1.22954 0.94369 0.98453 0.87000 1.87917 1.76001 1.52046 1.13371 0.91687 0.92658 0.92892 0.89840 0.92535 0.92714 0.91624 0.90003 0.88155 0.89077 0.91361 0.90421 0.90202 0.76573 0.91923 0.90915 0.90670 0.81779 0.90925 0.87506 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.05 37.16 0.34 -0.75 16 2 C -0.09 -0.70 2.81 -90.62 -0.25 -0.95 16 3 C -0.15 -1.14 8.71 37.16 0.32 -0.81 16 4 C 0.08 0.86 2.51 -26.58 -0.07 0.79 16 5 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 6 C 0.08 0.88 5.76 -3.53 -0.02 0.86 16 7 N -0.59 -8.32 3.03 -173.03 -0.52 -8.84 16 8 C 0.51 8.73 7.73 -11.58 -0.09 8.64 16 9 O -0.52 -9.31 13.24 5.50 0.07 -9.24 16 10 C 0.51 9.84 7.83 -11.59 -0.09 9.75 16 11 O -0.53 -10.61 13.37 5.50 0.07 -10.54 16 12 N -0.57 -11.70 3.33 -170.78 -0.57 -12.27 16 13 C 0.09 1.79 6.16 -2.53 -0.02 1.77 16 14 C -0.12 -2.41 6.23 -24.59 -0.15 -2.56 16 15 C 0.25 5.86 0.85 -89.94 -0.08 5.78 16 16 O -0.58 -14.34 13.06 -35.23 -0.46 -14.80 16 17 C -0.54 -13.67 8.09 -34.44 -0.28 -13.95 16 18 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 19 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 20 N -0.90 -23.03 11.02 55.43 0.61 -22.42 16 21 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.10 2.27 5.45 -2.90 -0.02 2.25 16 26 C 0.02 0.26 6.35 -3.75 -0.02 0.23 16 27 C 0.05 0.53 6.97 37.10 0.26 0.79 16 28 O -0.37 -4.14 9.04 -35.23 -0.32 -4.45 16 29 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.43 6.28 -51.93 -0.33 0.11 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.57 7.68 -51.93 -0.40 0.17 16 36 H 0.08 0.87 6.09 -51.93 -0.32 0.56 16 37 H 0.10 1.19 7.09 -51.93 -0.37 0.82 16 38 H 0.09 1.64 6.00 -51.93 -0.31 1.33 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 41 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 42 H 0.38 9.61 7.20 45.56 0.33 9.94 16 43 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 44 H 0.07 1.81 8.02 -51.93 -0.42 1.39 16 45 H 0.07 1.87 7.81 -51.92 -0.41 1.46 16 46 H 0.17 2.49 3.98 -56.30 -0.22 2.26 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 380.09 15.07 5.73 5.73 Total: -1.00 -27.51 380.09 -7.69 -35.20 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.02 Total: 13.15 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -0.26 Total: 13.54 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.48 Total: -43.54 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.63 Total: -39.04 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.51 -7.69 -35.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329451814.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.821 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds