Wall clock time and date at job start Sat Apr 11 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 C 1.53001 * 109.47039 * 119.99909 * 2 1 3 5 5 H 1.09000 * 109.51224 * 299.90137 * 4 2 1 6 6 C 1.53292 * 109.51429 * 179.74960 * 4 2 1 7 7 N 1.47150 * 108.38512 * 187.77476 * 6 4 2 8 8 C 1.34774 * 120.97890 * 230.50852 * 7 6 4 9 9 O 1.21344 * 120.00429 * 357.38688 * 8 7 6 10 10 C 1.49458 * 119.99779 * 177.37968 * 8 7 6 11 11 O 1.21346 * 120.00073 * 6.08581 * 10 8 7 12 12 N 1.34775 * 119.99701 * 186.08503 * 10 8 7 13 13 C 1.47425 * 125.65091 * 359.68963 * 12 10 8 14 14 C 1.55127 * 104.72137 * 155.81998 * 13 12 10 15 15 C 1.55165 * 101.48778 * 37.29511 * 14 13 12 16 16 O 1.42900 * 110.71717 * 82.69402 * 15 14 13 17 17 C 1.50696 * 110.72228 * 205.96622 * 15 14 13 18 18 H 1.08001 * 119.99994 * 356.26844 * 17 15 14 19 19 C 1.37874 * 120.00163 * 176.26248 * 17 15 14 20 20 N 1.31517 * 119.99660 * 354.88623 * 19 17 15 21 21 Si 1.86802 * 120.00242 * 174.88894 * 19 17 15 22 22 H 1.48502 * 109.46988 * 95.00204 * 21 19 17 23 23 H 1.48502 * 109.47027 * 215.00159 * 21 19 17 24 24 H 1.48490 * 109.46808 * 335.00096 * 21 19 17 25 25 C 1.47019 * 125.64589 * 180.02562 * 12 10 8 26 26 C 1.47151 * 118.03506 * 50.53269 * 7 6 4 27 27 C 1.53287 * 108.38648 * 309.46365 * 26 7 6 28 28 O 1.42963 * 109.22410 * 52.30592 * 27 26 7 29 29 H 1.08993 * 109.47617 * 300.00019 * 1 2 3 30 30 H 1.08998 * 109.47153 * 60.00253 * 1 2 3 31 31 H 1.08999 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47016 * 239.99870 * 2 1 3 33 33 H 1.09000 * 109.47083 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46923 * 299.99888 * 3 2 1 35 35 H 1.09004 * 109.47260 * 59.99283 * 3 2 1 36 36 H 1.09005 * 109.68054 * 307.49528 * 6 4 2 37 37 H 1.08994 * 109.68010 * 68.01094 * 6 4 2 38 38 H 1.08995 * 110.36669 * 274.75024 * 13 12 10 39 39 H 1.08997 * 110.36548 * 37.07362 * 13 12 10 40 40 H 1.08999 * 111.19253 * 279.19202 * 14 13 12 41 41 H 1.08996 * 110.94442 * 155.28911 * 14 13 12 42 42 H 0.96701 * 113.99913 * 185.02670 * 16 15 14 43 43 H 0.97006 * 119.99730 * 179.97438 * 20 19 17 44 44 H 1.09010 * 109.87915 * 300.43831 * 25 12 10 45 45 H 1.08993 * 109.88774 * 61.59830 * 25 12 10 46 46 H 1.09003 * 109.68307 * 69.19330 * 26 7 6 47 47 H 1.08999 * 109.68021 * 189.73867 * 26 7 6 48 48 H 1.09002 * 109.51815 * 292.37814 * 27 26 7 49 49 H 1.09002 * 109.51556 * 172.22717 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6785 -0.2069 2.1397 6 6 3.5729 -0.7273 1.2471 7 7 4.0352 -1.5829 2.3515 8 6 4.9543 -1.1416 3.2329 9 8 5.4483 -0.0419 3.0951 10 6 5.3651 -2.0069 4.3803 11 8 4.9558 -3.1466 4.4576 12 7 6.1901 -1.5212 5.3289 13 6 6.7643 -0.1636 5.3552 14 6 7.0812 0.1014 6.8505 15 6 7.5647 -1.2974 7.3166 16 8 8.9425 -1.4905 6.9905 17 6 7.3353 -1.4754 8.7953 18 1 6.9436 -0.6585 9.3832 19 6 7.6252 -2.6813 9.3976 20 7 8.0062 -3.7064 8.6671 21 14 7.4769 -2.8590 11.2512 22 1 6.1421 -3.4146 11.5900 23 1 8.5350 -3.7757 11.7468 24 1 7.6358 -1.5281 11.8903 25 6 6.6720 -2.2598 6.5052 26 6 3.4647 -2.9346 2.4647 27 6 1.9371 -2.8210 2.4076 28 8 1.5639 -2.0693 1.2502 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9371 -1.1230 0.2990 37 1 3.9442 0.2877 1.3881 38 1 7.6762 -0.1258 4.7593 39 1 6.0392 0.5622 4.9871 40 1 6.1875 0.4071 7.3945 41 1 7.8728 0.8433 6.9554 42 1 9.2736 -2.3767 7.1908 43 1 8.2105 -4.5547 9.0909 44 1 5.8261 -2.5816 7.1129 45 1 7.2530 -3.1253 6.1872 46 1 3.8181 -3.5525 1.6392 47 1 3.7644 -3.3813 3.4126 48 1 1.5759 -2.3145 3.3026 49 1 1.4997 -3.8178 2.3509 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329451817.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:13 Heat of formation + Delta-G solvation = -161.114707 kcal Electronic energy + Delta-G solvation = -31368.935186 eV Core-core repulsion = 27103.153375 eV Total energy + Delta-G solvation = -4265.781811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.24894 -40.74023 -39.55127 -39.08343 -36.76147 -36.24484 -35.58749 -34.26101 -31.95440 -31.50451 -29.79212 -29.43717 -27.93518 -27.45302 -25.77045 -25.08777 -23.80428 -22.43868 -21.46502 -21.20775 -20.47600 -19.15650 -18.40643 -18.29391 -17.59765 -17.57392 -17.14961 -17.03736 -16.62683 -16.21877 -16.02592 -15.79520 -15.53816 -14.93582 -14.86771 -14.84464 -14.75866 -14.40692 -14.24765 -14.02060 -13.64005 -13.57428 -13.54758 -13.42731 -13.00021 -12.86860 -12.62537 -12.61872 -12.39304 -12.37912 -12.28487 -12.18641 -11.94697 -11.89169 -11.72334 -11.49801 -11.24088 -11.14804 -10.69578 -10.40254 -10.14856 -9.90486 -9.70347 -8.27670 -6.43046 0.20814 1.06931 1.41664 1.45186 1.54834 1.97455 2.19207 2.38539 2.65577 2.96009 3.00433 3.53338 3.74524 3.82640 3.86474 3.93935 3.98935 4.09010 4.13137 4.18929 4.31087 4.31540 4.42419 4.44893 4.58778 4.60288 4.65485 4.75884 4.78938 4.83220 4.87842 4.96851 5.00577 5.01562 5.05210 5.06977 5.20656 5.25648 5.29967 5.39908 5.43953 5.45006 5.71531 5.81233 6.01711 6.09051 6.23759 6.50957 6.64595 6.79943 7.25024 7.32174 8.78388 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021473 B = 0.002642 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.659373 B =10594.847474 C =11095.974817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 C -0.149 4.149 4 C 0.085 3.915 5 H 0.056 0.944 6 C 0.078 3.922 7 N -0.582 5.582 8 C 0.516 3.484 9 O -0.529 6.529 10 C 0.505 3.495 11 O -0.540 6.540 12 N -0.580 5.580 13 C 0.110 3.890 14 C -0.114 4.114 15 C 0.234 3.766 16 O -0.586 6.586 17 C -0.557 4.557 18 H 0.067 0.933 19 C 0.029 3.971 20 N -0.912 5.912 21 Si 0.963 3.037 22 H -0.278 1.278 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.119 3.881 26 C 0.016 3.984 27 C 0.055 3.945 28 O -0.381 6.381 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.376 0.624 43 H 0.271 0.729 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.084 0.916 47 H 0.147 0.853 48 H 0.050 0.950 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.043 6.040 -16.043 21.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 C -0.207 4.207 4 C 0.027 3.973 5 H 0.074 0.926 6 C -0.044 4.044 7 N -0.316 5.316 8 C 0.298 3.702 9 O -0.406 6.406 10 C 0.289 3.711 11 O -0.422 6.422 12 N -0.311 5.311 13 C -0.012 4.012 14 C -0.152 4.152 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.595 4.595 18 H 0.086 0.914 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.192 1.192 25 C -0.003 4.003 26 C -0.104 4.104 27 C -0.022 4.022 28 O -0.300 6.300 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.164 0.836 48 H 0.068 0.932 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.130 6.390 -16.461 22.005 hybrid contribution 0.451 -1.223 1.492 1.982 sum -12.679 5.166 -14.969 20.286 Atomic orbital electron populations 1.21726 0.93716 1.02089 1.02188 1.21087 0.97231 0.96023 0.95686 1.21895 1.01388 0.94297 1.03082 1.22606 0.91022 0.83688 0.99989 0.92582 1.22694 0.95783 0.96759 0.89115 1.48067 1.39258 1.17025 1.27240 1.19800 0.80772 0.86302 0.83277 1.90685 1.54308 1.21131 1.74501 1.20139 0.80140 0.87222 0.83550 1.90292 1.55316 1.19799 1.76789 1.48796 1.43119 1.16448 1.22728 1.22660 0.98885 0.82033 0.97597 1.22867 1.01673 0.97044 0.93615 1.19709 0.78730 0.90568 0.91655 1.86138 1.27725 1.37862 1.87627 1.21771 1.45058 0.98900 0.93741 0.91437 1.25775 0.93413 0.95115 1.02934 1.69840 1.45748 1.02367 1.37170 0.85466 0.77729 0.78153 0.79829 1.20373 1.20692 1.19219 1.22811 0.97893 0.95706 0.83904 1.23918 0.95242 0.82310 1.08968 1.23049 0.92712 0.98281 0.88175 1.87929 1.75711 1.23688 1.42677 0.92988 0.91153 0.92688 0.89730 0.92270 0.90371 0.92509 0.89168 0.87874 0.91211 0.88160 0.89510 0.89066 0.77553 0.91970 0.93093 0.93477 0.89799 0.83624 0.93159 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.05 71.98 0.65 -1.19 16 2 C -0.08 -1.15 2.72 -10.79 -0.03 -1.18 16 3 C -0.15 -1.80 8.86 71.98 0.64 -1.16 16 4 C 0.09 1.62 2.36 30.69 0.07 1.69 16 5 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 6 C 0.08 1.67 5.31 86.35 0.46 2.13 16 7 N -0.58 -15.93 3.02 -818.95 -2.47 -18.40 16 8 C 0.52 17.25 7.72 87.27 0.67 17.93 16 9 O -0.53 -18.45 13.35 -3.23 -0.04 -18.49 16 10 C 0.51 19.69 7.84 87.27 0.68 20.37 16 11 O -0.54 -22.18 13.36 -3.23 -0.04 -22.23 16 12 N -0.58 -24.08 3.32 -812.94 -2.70 -26.78 16 13 C 0.11 4.09 5.98 86.93 0.52 4.61 16 14 C -0.11 -4.50 6.24 32.07 0.20 -4.30 16 15 C 0.23 11.15 0.85 -10.35 -0.01 11.14 16 16 O -0.59 -29.15 13.07 -148.98 -1.95 -31.09 16 17 C -0.56 -28.48 8.11 25.60 0.21 -28.27 16 18 H 0.07 3.38 7.78 -2.91 -0.02 3.36 16 19 C 0.03 1.48 5.28 84.65 0.45 1.92 16 20 N -0.91 -47.88 11.01 21.45 0.24 -47.64 16 21 Si 0.96 40.94 29.54 68.60 2.03 42.96 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 C 0.12 5.69 5.20 86.73 0.45 6.14 16 26 C 0.02 0.41 6.41 86.35 0.55 0.96 16 27 C 0.05 1.12 6.98 72.08 0.50 1.62 16 28 O -0.38 -7.93 9.71 -148.98 -1.45 -9.37 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.83 7.68 -2.39 -0.02 0.82 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 0.75 6.63 -2.39 -0.02 0.73 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.10 2.27 5.87 -2.39 -0.01 2.25 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.10 3.42 6.32 -2.39 -0.02 3.41 16 40 H 0.09 3.24 8.04 -2.39 -0.02 3.22 16 41 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.38 19.18 7.56 -74.06 -0.56 18.62 16 43 H 0.27 13.61 8.31 -92.70 -0.77 12.84 16 44 H 0.05 2.64 7.81 -2.38 -0.02 2.62 16 45 H 0.05 2.46 7.90 -2.39 -0.02 2.44 16 46 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.15 4.42 3.91 -75.07 -0.29 4.13 16 48 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -58.77 382.12 -0.25 -59.02 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: 0.12 Total: 39.61 kcal Atomic # 6 Polarization: 26.40 SS G_CDS: 6.02 Total: 32.42 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -4.94 Total: -92.83 kcal Atomic # 8 Polarization: -77.70 SS G_CDS: -3.48 Total: -81.18 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -58.77 -0.25 -59.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329451817.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.092 kcal (2) G-P(sol) polarization free energy of solvation -58.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds