Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46823 * 2 1 4 4 H 1.08995 * 109.47008 * 304.99482 * 3 2 1 5 5 C 1.54805 * 109.46650 * 185.00137 * 3 2 1 6 6 N 1.45117 * 109.53884 * 172.12013 * 5 3 2 7 7 C 1.34777 * 118.76104 * 269.30821 * 6 5 3 8 8 O 1.21354 * 120.00181 * 178.35017 * 7 6 5 9 9 C 1.49449 * 119.99950 * 358.34373 * 7 6 5 10 10 O 1.21352 * 119.99949 * 6.27786 * 9 7 6 11 11 N 1.34778 * 120.00081 * 186.27695 * 9 7 6 12 12 C 1.47419 * 125.64968 * 359.69179 * 11 9 7 13 13 C 1.55121 * 104.72341 * 155.81781 * 12 11 9 14 14 C 1.55157 * 101.48498 * 37.29934 * 13 12 11 15 15 O 1.42899 * 110.72438 * 82.69556 * 14 13 12 16 16 C 1.50708 * 110.71994 * 205.97047 * 14 13 12 17 17 H 1.08002 * 119.99972 * 354.97308 * 16 14 13 18 18 C 1.37873 * 120.00129 * 174.97505 * 16 14 13 19 19 N 1.31518 * 119.99902 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00168 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46824 * 59.99811 * 20 18 16 22 22 H 1.48503 * 109.47332 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47098 * 299.99862 * 20 18 16 24 24 C 1.47016 * 125.64685 * 180.02562 * 11 9 7 25 25 C 1.47513 * 122.48271 * 89.28148 * 6 5 3 26 26 C 1.53567 * 111.03125 * 318.37133 * 25 6 5 27 27 C 1.51533 * 109.57850 * 320.02073 * 26 25 6 28 28 O 1.38009 * 109.47047 * 64.99579 * 3 2 1 29 29 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47307 * 299.99931 * 1 2 3 31 31 H 1.09000 * 109.47416 * 59.99872 * 1 2 3 32 32 H 1.09001 * 109.46818 * 240.00231 * 2 1 3 33 33 H 1.08994 * 109.46996 * 120.00093 * 2 1 3 34 34 H 1.08998 * 109.46022 * 292.14477 * 5 3 2 35 35 H 1.09008 * 109.45658 * 52.10131 * 5 3 2 36 36 H 1.09005 * 110.36774 * 274.75077 * 12 11 9 37 37 H 1.09000 * 110.36349 * 37.06683 * 12 11 9 38 38 H 1.08996 * 111.19576 * 279.19185 * 13 12 11 39 39 H 1.09008 * 110.94227 * 155.28542 * 13 12 11 40 40 H 0.96700 * 114.00223 * 185.02038 * 15 14 13 41 41 H 0.97002 * 119.99707 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.88690 * 300.44015 * 24 11 9 43 43 H 1.09002 * 109.88775 * 61.60196 * 24 11 9 44 44 H 1.09006 * 109.16335 * 78.77552 * 25 6 5 45 45 H 1.09000 * 109.16814 * 198.02008 * 25 6 5 46 46 H 1.08992 * 109.45280 * 80.05681 * 26 25 6 47 47 H 1.08997 * 109.45241 * 199.98846 * 26 25 6 48 48 H 1.09008 * 109.58847 * 211.18255 * 27 26 25 49 49 H 1.09004 * 109.59325 * 331.47222 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5828 1.4444 -0.1272 6 7 4.0527 2.8045 -0.3146 7 6 4.1798 3.2797 -1.5694 8 8 4.5421 4.4235 -1.7513 9 6 3.8745 2.3979 -2.7368 10 8 3.4043 1.2938 -2.5566 11 7 4.1215 2.8290 -3.9897 12 6 4.6823 4.1436 -4.3511 13 6 5.3351 3.9250 -5.7412 14 6 4.3290 2.9479 -6.4048 15 8 3.2239 3.6618 -6.9626 16 6 5.0120 2.1127 -7.4571 17 1 6.0446 2.3020 -7.7106 18 6 4.3185 1.1069 -8.0961 19 7 3.0612 0.8760 -7.7870 20 14 5.1648 0.0720 -9.4008 21 1 6.3326 -0.6222 -8.8014 22 1 4.2099 -0.9342 -9.9309 23 1 5.6247 0.9495 -10.5071 24 6 3.8699 2.0687 -5.2225 25 6 4.3961 3.6869 0.8166 26 6 3.3734 3.5484 1.9538 27 6 1.9789 3.4348 1.3716 28 8 1.6747 2.0596 1.1792 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0224 1.0299 0.7799 35 1 3.8772 0.8373 -0.9834 36 1 3.8900 4.8896 -4.4145 37 1 5.4340 4.4484 -3.6231 38 1 6.3198 3.4673 -5.6465 39 1 5.3937 4.8616 -6.2957 40 1 2.5291 3.0930 -7.3216 41 1 2.5735 0.1681 -8.2364 42 1 4.4400 1.1398 -5.2082 43 1 2.8056 1.8513 -5.3134 44 1 5.3850 3.4213 1.1902 45 1 4.4096 4.7211 0.4725 46 1 3.5974 2.6550 2.5366 47 1 3.4270 4.4252 2.5990 48 1 1.2583 3.8757 2.0605 49 1 1.9381 3.9576 0.4160 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329453022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = -159.040722 kcal Electronic energy + Delta-G solvation = -32136.571489 eV Core-core repulsion = 27870.879613 eV Total energy + Delta-G solvation = -4265.691876 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34854 -40.72364 -39.66097 -39.02680 -36.84670 -35.97694 -35.30496 -34.25541 -32.76518 -31.91211 -29.76565 -29.36973 -28.17786 -27.30922 -25.64519 -24.42069 -23.52418 -22.21856 -21.83650 -21.39698 -20.37707 -19.14234 -18.49124 -18.24463 -17.87389 -17.65680 -17.20333 -17.07551 -16.66826 -16.34484 -16.05739 -15.75512 -15.20747 -14.85398 -14.82449 -14.81466 -14.73580 -14.38441 -14.31638 -13.99652 -13.72170 -13.56258 -13.52317 -13.41188 -12.93362 -12.83371 -12.65661 -12.60313 -12.37802 -12.32718 -12.30697 -12.17906 -11.93743 -11.90348 -11.83142 -11.48761 -11.17895 -10.70970 -10.67010 -10.41680 -10.22992 -9.91592 -9.61438 -8.27473 -6.43493 0.25789 1.16421 1.43905 1.44667 1.52358 2.00159 2.27312 2.39163 2.66873 2.98276 3.04257 3.68203 3.75616 3.78065 3.96800 4.00322 4.02588 4.08970 4.13437 4.24294 4.29208 4.32499 4.41767 4.49569 4.58813 4.62442 4.66190 4.71099 4.75361 4.86631 4.91531 4.95341 5.00377 5.05750 5.09025 5.11297 5.14706 5.25970 5.29121 5.31442 5.41726 5.43890 5.71304 5.81533 6.02441 6.28131 6.50282 6.62113 6.65285 6.84671 7.25496 7.33620 8.78670 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.003352 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.089956 B = 8351.469932 C = 9438.752854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 C 0.108 3.892 4 H 0.017 0.983 5 C 0.048 3.952 6 N -0.575 5.575 7 C 0.506 3.494 8 O -0.531 6.531 9 C 0.498 3.502 10 O -0.537 6.537 11 N -0.584 5.584 12 C 0.111 3.889 13 C -0.114 4.114 14 C 0.234 3.766 15 O -0.587 6.587 16 C -0.559 4.559 17 H 0.067 0.933 18 C 0.030 3.970 19 N -0.913 5.913 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.122 3.878 25 C 0.099 3.901 26 C -0.152 4.152 27 C 0.066 3.934 28 O -0.390 6.390 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.376 0.624 41 H 0.271 0.729 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.118 0.882 48 H 0.114 0.886 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 2.415 19.916 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.048 3.952 4 H 0.035 0.965 5 C -0.075 4.075 6 N -0.307 5.307 7 C 0.288 3.712 8 O -0.409 6.409 9 C 0.282 3.718 10 O -0.417 6.417 11 N -0.316 5.316 12 C -0.010 4.010 13 C -0.152 4.152 14 C 0.193 3.807 15 O -0.395 6.395 16 C -0.597 4.597 17 H 0.085 0.915 18 C -0.171 4.171 19 N -0.552 5.552 20 Si 0.788 3.212 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.196 1.196 24 C 0.000 4.000 25 C -0.021 4.021 26 C -0.189 4.189 27 C -0.010 4.010 28 O -0.309 6.309 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.136 0.864 48 H 0.131 0.869 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.143 2.740 20.301 20.485 hybrid contribution -0.111 -1.000 -1.570 1.864 sum 0.033 1.741 18.731 18.811 Atomic orbital electron populations 1.21658 0.94894 1.02161 1.01377 1.21440 0.96970 0.92845 1.03216 1.21779 0.92715 0.94821 0.85888 0.96549 1.23403 0.95835 0.82160 1.06092 1.47904 1.62865 1.15270 1.04659 1.20021 0.79240 0.87018 0.84886 1.90680 1.46513 1.18463 1.85237 1.20188 0.80559 0.87213 0.83797 1.90543 1.45522 1.21737 1.83891 1.48764 1.59034 1.18673 1.05103 1.22607 0.98186 0.83244 0.96991 1.22860 0.98074 1.00420 0.93843 1.19712 0.84270 0.88115 0.88571 1.86126 1.33853 1.39135 1.80406 1.21762 0.98992 1.16924 1.22052 0.91452 1.25770 0.95501 0.97509 0.98334 1.69787 1.09838 1.32689 1.42910 0.85532 0.78326 0.78191 0.79144 1.19659 1.20860 1.19565 1.22714 0.99322 0.95237 0.82714 1.22238 0.99743 0.94735 0.85348 1.22419 0.93619 1.05659 0.97245 1.22367 0.97383 0.81364 0.99851 1.86219 1.81147 1.25146 1.38398 0.91333 0.91925 0.94515 0.90938 0.89510 0.88074 0.86397 0.91566 0.88277 0.89531 0.89212 0.77470 0.91942 0.93277 0.93816 0.89229 0.89452 0.89285 0.86361 0.86851 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.80 71.98 0.71 -2.44 16 2 C -0.11 -2.48 5.64 30.60 0.17 -2.30 16 3 C 0.11 2.80 2.16 31.21 0.07 2.87 16 4 H 0.02 0.54 7.84 -2.39 -0.02 0.52 16 5 C 0.05 1.20 4.44 87.25 0.39 1.59 16 6 N -0.57 -15.08 2.19 -819.53 -1.80 -16.88 16 7 C 0.51 16.89 7.65 87.27 0.67 17.56 16 8 O -0.53 -18.61 13.17 -3.26 -0.04 -18.66 16 9 C 0.50 19.60 7.77 87.27 0.68 20.28 16 10 O -0.54 -21.98 12.62 -3.25 -0.04 -22.02 16 11 N -0.58 -24.61 3.32 -812.96 -2.70 -27.31 16 12 C 0.11 4.25 5.98 86.93 0.52 4.77 16 13 C -0.11 -4.59 6.24 32.06 0.20 -4.39 16 14 C 0.23 11.32 0.85 -10.35 -0.01 11.31 16 15 O -0.59 -29.77 13.08 -148.98 -1.95 -31.72 16 16 C -0.56 -28.98 8.12 25.60 0.21 -28.77 16 17 H 0.07 3.40 7.78 -2.91 -0.02 3.38 16 18 C 0.03 1.55 5.28 84.65 0.45 2.00 16 19 N -0.91 -48.40 10.98 21.45 0.24 -48.17 16 20 Si 0.96 41.22 29.54 68.60 2.03 43.25 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 C 0.12 5.93 5.23 86.73 0.45 6.38 16 25 C 0.10 1.87 6.16 86.38 0.53 2.40 16 26 C -0.15 -2.07 5.78 30.30 0.18 -1.90 16 27 C 0.07 1.23 6.37 71.50 0.46 1.69 16 28 O -0.39 -8.93 8.99 -117.78 -1.06 -9.99 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.31 7.82 -2.39 -0.02 1.29 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 2.03 8.11 -2.39 -0.02 2.01 16 35 H 0.12 3.60 4.81 -33.15 -0.16 3.44 16 36 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.10 3.47 6.32 -2.39 -0.02 3.45 16 38 H 0.09 3.29 8.04 -2.39 -0.02 3.28 16 39 H 0.09 3.38 8.14 -2.38 -0.02 3.36 16 40 H 0.38 19.62 7.47 -74.06 -0.55 19.07 16 41 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 42 H 0.05 2.57 7.81 -2.39 -0.02 2.55 16 43 H 0.04 2.32 7.92 -2.39 -0.02 2.30 16 44 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 45 H 0.09 1.80 6.98 -2.39 -0.02 1.79 16 46 H 0.09 1.15 8.01 -2.39 -0.02 1.13 16 47 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 49 H 0.03 0.65 7.41 -2.39 -0.02 0.64 16 Total: -1.00 -60.39 380.61 0.59 -59.80 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: 0.26 Total: 40.67 kcal Atomic # 6 Polarization: 25.37 SS G_CDS: 5.66 Total: 31.03 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -4.26 Total: -92.36 kcal Atomic # 8 Polarization: -79.29 SS G_CDS: -3.09 Total: -82.38 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Total: -60.39 0.59 -59.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329453022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.243 kcal (2) G-P(sol) polarization free energy of solvation -60.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds