Wall clock time and date at job start Sat Apr 11 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99883 * 2 1 4 4 O 1.20825 * 119.99969 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99881 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47341 * 174.23323 * 5 3 2 7 7 H 1.09000 * 109.99826 * 53.11161 * 6 5 3 8 8 C 1.54331 * 109.98822 * 292.07629 * 6 5 3 9 9 C 1.55155 * 103.02217 * 218.66158 * 8 6 5 10 10 C 1.54909 * 101.57825 * 35.31076 * 9 8 6 11 11 N 1.47022 * 109.88550 * 174.21148 * 6 5 3 12 12 C 1.34778 * 125.64404 * 298.39768 * 11 6 5 13 13 O 1.21343 * 120.00476 * 354.59969 * 12 11 6 14 14 C 1.49454 * 119.99572 * 174.60629 * 12 11 6 15 15 O 1.21354 * 120.00372 * 359.97438 * 14 12 11 16 16 N 1.34774 * 119.99873 * 179.97438 * 14 12 11 17 17 C 1.46504 * 120.00331 * 180.27216 * 16 14 12 18 18 C 1.52991 * 109.47352 * 179.72860 * 17 16 14 19 19 C 1.53001 * 109.47311 * 300.00063 * 18 17 16 20 20 C 1.53003 * 109.47304 * 60.00131 * 18 17 16 21 21 C 1.50700 * 109.46939 * 180.02562 * 18 17 16 22 22 H 1.07994 * 120.00194 * 0.02562 * 21 18 17 23 23 C 1.37884 * 120.00115 * 179.97438 * 21 18 17 24 24 N 1.31516 * 119.99806 * 0.02562 * 23 21 18 25 25 Si 1.86799 * 120.00158 * 179.97438 * 23 21 18 26 26 H 1.48494 * 109.47178 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46990 * 119.99876 * 25 23 21 28 28 H 1.48493 * 109.47388 * 239.99952 * 25 23 21 29 29 H 1.08997 * 109.46660 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46924 * 300.00263 * 1 2 3 31 31 H 1.09000 * 109.46650 * 59.99983 * 1 2 3 32 32 H 1.08996 * 109.47252 * 54.22811 * 5 3 2 33 33 H 1.09008 * 109.47020 * 294.23221 * 5 3 2 34 34 H 1.09004 * 110.84853 * 100.19944 * 8 6 5 35 35 H 1.08995 * 110.67528 * 337.04958 * 8 6 5 36 36 H 1.09000 * 111.00610 * 277.24067 * 9 8 6 37 37 H 1.09002 * 111.00327 * 153.38025 * 9 8 6 38 38 H 1.09003 * 110.36929 * 204.14728 * 10 9 8 39 39 H 1.09001 * 110.46394 * 81.87836 * 10 9 8 40 40 H 0.97001 * 120.00187 * 0.02562 * 16 14 12 41 41 H 1.09000 * 109.47299 * 299.73339 * 17 16 14 42 42 H 1.08996 * 109.46801 * 59.72622 * 17 16 14 43 43 H 1.08998 * 109.47131 * 60.00195 * 19 18 17 44 44 H 1.08994 * 109.47286 * 180.02562 * 19 18 17 45 45 H 1.09003 * 109.47308 * 300.00216 * 19 18 17 46 46 H 1.09000 * 109.46659 * 59.99943 * 20 18 17 47 47 H 1.09001 * 109.46941 * 179.97438 * 20 18 17 48 48 H 1.08994 * 109.46809 * 300.00179 * 20 18 17 49 49 H 0.96999 * 120.00040 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0005 2.7348 -0.1454 7 1 3.5128 3.3459 0.6141 8 6 3.6341 3.2573 -1.5506 9 6 4.8503 4.1466 -1.9211 10 6 6.0174 3.3650 -1.2678 11 7 5.4607 2.8382 -0.0085 12 6 6.1728 2.5015 1.0851 13 8 5.6016 2.1641 2.1010 14 6 7.6663 2.5440 1.0465 15 8 8.2377 2.8811 0.0304 16 7 8.3785 2.2078 2.1402 17 6 9.8423 2.2551 2.1043 18 6 10.3997 1.8357 3.4659 19 6 9.8849 2.7915 4.5441 20 6 9.9432 0.4111 3.7871 21 6 11.9054 1.8850 3.4291 22 1 12.4139 2.1858 2.5251 23 6 12.6339 1.5471 4.5499 24 7 12.0147 1.1813 5.6510 25 14 14.5004 1.6075 4.5041 26 1 14.9485 2.0464 3.1581 27 1 14.9898 2.5677 5.5257 28 1 15.0466 0.2570 4.7922 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 3.9603 0.6942 -0.8346 33 1 3.9516 0.8725 0.9364 34 1 2.7193 3.8492 -1.5180 35 1 3.5321 2.4309 -2.2539 36 1 4.7542 5.1412 -1.4857 37 1 4.9763 4.2055 -3.0022 38 1 6.8537 4.0333 -1.0627 39 1 6.3364 2.5466 -1.9133 40 1 7.9218 1.9380 2.9523 41 1 10.2091 1.5742 1.3362 42 1 10.1675 3.2699 1.8755 43 1 8.7958 2.7562 4.5709 44 1 10.2823 2.4930 5.5141 45 1 10.2100 3.8064 4.3153 46 1 10.3101 -0.2697 3.0190 47 1 10.3408 0.1122 4.7570 48 1 8.8542 0.3759 3.8138 49 1 12.5272 0.9432 6.4394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331769658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:39 Heat of formation + Delta-G solvation = -154.430970 kcal Electronic energy + Delta-G solvation = -30425.105490 eV Core-core repulsion = 26159.613507 eV Total energy + Delta-G solvation = -4265.491983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.15964 -40.44758 -38.88359 -37.61374 -36.76540 -36.43996 -33.43707 -32.39269 -31.77098 -30.90175 -28.49173 -26.53308 -26.44918 -25.73432 -25.35229 -24.24697 -22.16728 -21.79233 -20.76306 -19.52632 -18.83623 -18.08978 -17.56444 -17.28505 -16.85766 -16.70035 -16.00188 -15.81343 -15.32898 -15.01029 -14.77952 -14.52051 -14.08136 -13.93276 -13.73373 -13.61159 -13.34558 -13.11747 -12.94124 -12.77945 -12.71726 -12.47199 -12.24136 -12.13739 -11.65719 -11.41714 -11.30745 -11.22490 -11.14780 -11.05803 -11.04897 -10.90273 -10.79448 -10.68140 -10.41428 -10.21124 -9.66641 -9.51443 -9.20371 -8.98711 -8.80544 -8.60363 -8.38542 -6.03878 -4.14607 1.59208 1.88173 2.14787 2.59914 3.26095 3.34895 3.38689 3.41536 3.69474 4.16638 4.23625 4.38289 4.44734 4.54949 4.74671 4.75456 4.81174 4.85228 4.90821 5.01432 5.17000 5.22867 5.27295 5.38259 5.52354 5.60596 5.71244 5.75477 5.92762 6.02390 6.05747 6.09959 6.21849 6.45625 6.61984 6.81908 6.83976 6.92768 6.99091 7.08763 7.31612 7.39697 7.53884 7.54724 7.68031 7.93309 7.98982 8.11430 8.30748 8.39615 8.85889 9.51375 10.97557 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.002279 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.329787 B =12280.604931 C =13206.918390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.506 6.506 5 C -0.130 4.130 6 C 0.149 3.851 7 H 0.094 0.906 8 C -0.126 4.126 9 C -0.136 4.136 10 C 0.102 3.898 11 N -0.593 5.593 12 C 0.522 3.478 13 O -0.519 6.519 14 C 0.498 3.502 15 O -0.529 6.529 16 N -0.680 5.680 17 C 0.129 3.871 18 C 0.055 3.945 19 C -0.134 4.134 20 C -0.133 4.133 21 C -0.506 4.506 22 H 0.059 0.941 23 C 0.066 3.934 24 N -0.884 5.884 25 Si 0.894 3.106 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.284 1.284 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.411 0.589 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.087 0.913 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.087 0.913 48 H 0.008 0.992 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.136 0.534 -13.815 24.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.393 6.393 5 C -0.169 4.169 6 C 0.045 3.955 7 H 0.112 0.888 8 C -0.163 4.163 9 C -0.174 4.174 10 C -0.020 4.020 11 N -0.328 5.328 12 C 0.306 3.694 13 O -0.394 6.394 14 C 0.278 3.722 15 O -0.408 6.408 16 N -0.331 5.331 17 C 0.007 3.993 18 C 0.054 3.946 19 C -0.191 4.191 20 C -0.191 4.191 21 C -0.545 4.545 22 H 0.077 0.923 23 C -0.136 4.136 24 N -0.522 5.522 25 Si 0.722 3.278 26 H -0.198 1.198 27 H -0.211 1.211 28 H -0.211 1.211 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.248 0.752 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.047 0.953 47 H 0.106 0.894 48 H 0.027 0.973 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.127 0.798 -13.698 24.359 hybrid contribution 0.565 -0.177 0.444 0.740 sum -19.562 0.621 -13.254 23.638 Atomic orbital electron populations 1.23283 0.76138 1.03788 1.02613 1.86524 1.23600 1.33392 1.84059 1.23492 0.91718 0.81398 0.72043 1.90666 1.67203 1.36166 1.45279 1.21809 0.88054 0.99778 1.07249 1.21393 0.80443 0.93961 0.99675 0.88840 1.22738 0.99364 1.00195 0.94051 1.22886 0.93998 0.99082 1.01479 1.22612 0.96958 0.98576 0.83866 1.48333 1.06810 1.63162 1.14457 1.20289 0.88772 0.78031 0.82339 1.90753 1.72039 1.46441 1.30200 1.19812 0.87212 0.80234 0.84966 1.90695 1.71556 1.47387 1.31133 1.46223 1.09325 1.63795 1.13792 1.21941 0.74883 1.01078 1.01364 1.18391 0.95377 0.92641 0.88142 1.21857 0.95553 0.98078 1.03654 1.21855 0.95634 0.97969 1.03663 1.20979 0.89676 1.45679 0.98123 0.92294 1.24893 0.98481 0.94811 0.95383 1.69818 1.34857 1.45480 1.02086 0.86500 0.85578 0.77605 0.78097 1.19760 1.21068 1.21058 0.88036 0.91774 0.91836 0.87265 0.86168 0.89060 0.90628 0.90327 0.89427 0.88111 0.90675 0.75203 0.91976 0.91990 0.97272 0.89434 0.95348 0.95341 0.89438 0.97272 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.44 10.57 -39.27 -0.41 -3.86 16 3 C 0.47 4.91 7.68 36.00 0.28 5.18 16 4 O -0.51 -6.13 14.82 -18.75 -0.28 -6.41 16 5 C -0.13 -1.29 5.30 -27.88 -0.15 -1.44 16 6 C 0.15 1.56 2.49 -66.95 -0.17 1.40 16 7 H 0.09 1.12 7.82 -51.93 -0.41 0.72 16 8 C -0.13 -1.00 5.59 -24.89 -0.14 -1.13 16 9 C -0.14 -1.02 7.09 -24.58 -0.17 -1.19 16 10 C 0.10 1.05 5.88 -2.53 -0.01 1.04 16 11 N -0.59 -7.30 3.06 -163.52 -0.50 -7.80 16 12 C 0.52 8.02 7.63 -11.58 -0.09 7.93 16 13 O -0.52 -8.85 15.66 5.50 0.09 -8.76 16 14 C 0.50 8.55 7.85 -11.58 -0.09 8.46 16 15 O -0.53 -9.60 13.92 5.49 0.08 -9.53 16 16 N -0.68 -12.40 4.95 -60.73 -0.30 -12.70 16 17 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 18 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 19 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 20 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 21 C -0.51 -12.98 8.01 -34.44 -0.28 -13.26 16 22 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 23 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 24 N -0.88 -23.45 9.35 55.43 0.52 -22.93 16 25 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.11 0.88 8.01 -51.93 -0.42 0.46 16 33 H 0.12 1.37 6.88 -51.92 -0.36 1.01 16 34 H 0.09 0.73 7.88 -51.93 -0.41 0.32 16 35 H 0.08 0.51 7.76 -51.93 -0.40 0.11 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.21 6.49 -51.93 -0.34 0.87 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.41 7.43 5.63 -40.82 -0.23 7.20 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 44 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 48 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 49 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -29.33 391.36 -6.95 -36.27 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.67 Total: 6.10 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 0.66 Total: 8.27 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.28 Total: -43.43 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.53 Total: -28.55 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.33 -6.95 -36.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331769658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.158 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds