Wall clock time and date at job start Sat Apr 11 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46896 * 2 1 4 4 N 1.46501 * 109.47123 * 119.99953 * 2 1 3 5 5 C 1.46495 * 120.00470 * 299.99830 * 4 2 1 6 6 C 1.52999 * 109.47479 * 270.00477 * 5 4 2 7 7 N 1.46500 * 109.47228 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99688 * 89.99698 * 7 6 5 9 9 C 1.36935 * 120.00126 * 270.00092 * 7 6 5 10 10 H 1.07999 * 120.00125 * 23.04404 * 9 7 6 11 11 C 1.38814 * 119.99912 * 203.04907 * 9 7 6 12 12 N 1.31622 * 120.00100 * 12.92927 * 11 9 7 13 13 Si 1.86800 * 120.00044 * 192.93015 * 11 9 7 14 14 H 1.48502 * 109.46855 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.46841 * 119.99858 * 13 11 9 16 16 H 1.48494 * 109.47062 * 239.99601 * 13 11 9 17 17 C 1.34778 * 119.99760 * 120.00340 * 4 2 1 18 18 O 1.21282 * 120.00166 * 180.02562 * 17 4 2 19 19 C 1.50700 * 120.00196 * 359.97438 * 17 4 2 20 20 C 1.50695 * 109.47346 * 180.02562 * 19 17 4 21 21 C 1.38224 * 119.98963 * 265.02229 * 20 19 17 22 22 C 1.38187 * 120.05075 * 179.97438 * 21 20 19 23 23 C 1.38494 * 120.02950 * 0.02562 * 22 21 20 24 24 F 1.35097 * 120.01430 * 180.02562 * 23 22 21 25 25 C 1.38407 * 119.96732 * 359.72670 * 23 22 21 26 26 C 1.38436 * 119.95017 * 0.52716 * 25 23 22 27 27 F 1.35097 * 120.01027 * 179.74221 * 26 25 23 28 28 H 1.09003 * 109.47178 * 299.99453 * 1 2 3 29 29 H 1.08997 * 109.47627 * 59.99726 * 1 2 3 30 30 H 1.09003 * 109.46835 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47178 * 240.00547 * 2 1 3 32 32 H 1.09003 * 109.47367 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47530 * 299.99880 * 3 2 1 34 34 H 1.09002 * 109.47098 * 60.00718 * 3 2 1 35 35 H 1.09004 * 109.46682 * 30.00054 * 5 4 2 36 36 H 1.08997 * 109.47148 * 149.99813 * 5 4 2 37 37 H 1.09004 * 109.46742 * 300.00046 * 6 5 4 38 38 H 1.09003 * 109.46797 * 59.99459 * 6 5 4 39 39 H 1.09005 * 109.46978 * 95.12247 * 8 7 6 40 40 H 1.08993 * 109.47083 * 215.11987 * 8 7 6 41 41 H 1.08993 * 109.47191 * 335.12444 * 8 7 6 42 42 H 0.96997 * 120.00401 * 180.02562 * 12 11 9 43 43 H 1.09000 * 109.47031 * 59.99604 * 19 17 4 44 44 H 1.09010 * 109.47069 * 300.00022 * 19 17 4 45 45 H 1.08000 * 119.97359 * 359.97438 * 21 20 19 46 46 H 1.08003 * 119.98506 * 180.02562 * 22 21 20 47 47 H 1.08004 * 120.01993 * 180.28041 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6645 -0.1902 2.5268 6 6 2.7190 0.8170 2.9900 7 7 2.3648 1.3178 4.3204 8 6 2.8529 0.6274 5.5168 9 6 1.5776 2.4313 4.4455 10 1 0.9228 2.7233 3.6379 11 6 1.6213 3.1847 5.6106 12 7 2.5860 2.9899 6.4846 13 14 0.3109 4.4751 5.9381 14 1 -0.6546 4.4974 4.8100 15 1 -0.4059 4.1444 7.1960 16 1 0.9510 5.8085 6.0690 17 6 2.7932 -1.7864 1.0725 18 8 3.1972 -2.3584 2.0627 19 6 3.1569 -2.3015 -0.2963 20 6 4.0229 -3.5270 -0.1581 21 6 5.3994 -3.4084 -0.1984 22 6 6.1948 -4.5313 -0.0713 23 6 5.6134 -5.7771 0.0962 24 9 6.3913 -6.8745 0.2210 25 6 4.2352 -5.8963 0.1419 26 6 3.4394 -4.7714 0.0092 27 9 2.0940 -4.8871 0.0483 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8901 35 1 0.6905 0.2973 2.4844 36 1 1.6239 -1.0227 3.2291 37 1 3.6931 0.3295 3.0323 38 1 2.7596 1.6495 2.2875 39 1 3.7665 1.1082 5.8666 40 1 2.0949 0.6754 6.2985 41 1 3.0604 -0.4150 5.2755 42 1 2.6164 3.5161 7.2988 43 1 3.7016 -1.5308 -0.8416 44 1 2.2483 -2.5587 -0.8409 45 1 5.8537 -2.4374 -0.3294 46 1 7.2703 -4.4373 -0.1025 47 1 3.7811 -6.8669 0.2770 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332707488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:06 Heat of formation + Delta-G solvation = -75.557616 kcal Electronic energy + Delta-G solvation = -30182.221948 eV Core-core repulsion = 25809.062655 eV Total energy + Delta-G solvation = -4373.159293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -49.23585 -49.18450 -40.21339 -38.88953 -36.71684 -35.38755 -33.02422 -31.98106 -31.09413 -30.98561 -28.87133 -27.35103 -26.87891 -25.76616 -23.63345 -23.43319 -22.32256 -21.65460 -20.46425 -18.69052 -18.37532 -17.49852 -17.46769 -16.60342 -16.30980 -16.11531 -15.93927 -15.48524 -15.30757 -15.10905 -14.72456 -14.58424 -14.11304 -14.05655 -13.92044 -13.58239 -13.43737 -13.07876 -12.95098 -12.68634 -12.28198 -12.21976 -12.15624 -12.08942 -11.94512 -11.80036 -11.60775 -11.44323 -11.10759 -10.91518 -10.82097 -10.75845 -10.47728 -10.10581 -9.89877 -9.68249 -9.66613 -9.29676 -8.83012 -8.67713 -8.37393 -6.68962 -5.69282 -3.17131 0.67755 0.77391 2.78086 2.96329 3.29154 3.37693 3.44469 3.46335 3.63415 4.14391 4.26515 4.29986 4.51419 4.56488 4.59169 4.76858 4.81021 5.05045 5.13340 5.17247 5.18810 5.44805 5.50252 5.54875 5.60153 5.62436 5.67206 5.74947 5.77019 5.80649 5.83317 5.88786 5.94706 6.10633 6.23960 6.29255 6.40628 6.49695 6.60570 6.76693 6.92001 7.02053 7.44781 7.64251 7.77693 7.83554 8.36272 8.43547 9.26023 9.90069 10.40349 11.34965 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002700 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.443063 B =10367.354435 C =11298.451294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 C -0.169 4.169 4 N -0.600 5.600 5 C 0.093 3.907 6 C 0.139 3.861 7 N -0.600 5.600 8 C 0.162 3.838 9 C -0.255 4.255 10 H 0.067 0.933 11 C 0.002 3.998 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.512 3.488 18 O -0.530 6.530 19 C -0.103 4.103 20 C -0.105 4.105 21 C -0.049 4.049 22 C -0.161 4.161 23 C 0.126 3.874 24 F -0.134 7.134 25 C -0.192 4.192 26 C 0.145 3.855 27 F -0.128 7.128 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.030 0.970 40 H 0.039 0.961 41 H 0.001 0.999 42 H 0.251 0.749 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -13.154 -20.152 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.025 3.975 3 C -0.227 4.227 4 N -0.334 5.334 5 C -0.031 4.031 6 C 0.011 3.989 7 N -0.323 5.323 8 C 0.017 3.983 9 C -0.385 4.385 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.550 5.550 13 Si 0.733 3.267 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.218 1.218 17 C 0.298 3.702 18 O -0.407 6.407 19 C -0.143 4.143 20 C -0.107 4.107 21 C -0.067 4.067 22 C -0.180 4.180 23 C 0.107 3.893 24 F -0.112 7.112 25 C -0.211 4.211 26 C 0.125 3.875 27 F -0.107 7.107 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.019 0.981 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.162 0.838 46 H 0.161 0.839 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.824 -13.408 -19.411 23.760 hybrid contribution -0.886 0.530 0.381 1.100 sum 1.938 -12.879 -19.030 23.060 Atomic orbital electron populations 1.22180 0.94883 1.02320 1.02960 1.21179 0.94712 0.94018 0.87594 1.22329 1.01688 0.95442 1.03216 1.48179 1.50126 1.27297 1.07789 1.22481 1.00606 0.98945 0.81113 1.21173 0.94530 0.94869 0.88342 1.43852 1.59313 1.29666 0.99446 1.20796 0.98879 0.90278 0.88313 1.19184 1.15451 1.01957 1.01876 0.91513 1.25034 0.97744 0.98214 0.98675 1.70092 1.31149 1.42374 1.11379 0.86218 0.81296 0.81312 0.77890 1.20358 1.21646 1.21769 1.20283 0.78855 0.80438 0.90604 1.90740 1.52936 1.57520 1.39464 1.20671 1.00762 0.95752 0.97128 1.19444 0.94688 0.92840 1.03687 1.20761 0.91442 0.98873 0.95588 1.21161 1.01554 0.90845 1.04453 1.17283 0.87761 0.83233 1.01056 1.91525 1.74352 1.52134 1.93193 1.20965 0.92512 0.99826 1.07811 1.17065 0.77194 0.93149 1.00046 1.91524 1.28968 1.96736 1.93429 0.91393 0.91533 0.92454 0.89644 0.92167 0.91818 0.90501 0.90714 0.90771 0.94651 0.92914 0.95157 0.94193 0.98089 0.93823 0.87284 0.87747 0.83845 0.83915 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 9.17 37.16 0.34 -1.32 16 2 C 0.13 1.36 3.17 -67.93 -0.22 1.14 16 3 C -0.17 -1.84 8.14 37.16 0.30 -1.54 16 4 N -0.60 -8.57 2.40 -166.11 -0.40 -8.97 16 5 C 0.09 1.68 5.15 -4.04 -0.02 1.66 16 6 C 0.14 2.93 5.69 -4.04 -0.02 2.91 16 7 N -0.60 -15.39 2.92 -181.12 -0.53 -15.92 16 8 C 0.16 4.23 8.98 59.85 0.54 4.76 16 9 C -0.26 -6.95 9.65 -15.06 -0.15 -7.10 16 10 H 0.07 1.75 7.86 -52.49 -0.41 1.33 16 11 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 12 N -0.90 -26.76 10.71 55.49 0.59 -26.17 16 13 Si 0.90 21.75 29.57 -169.99 -5.03 16.73 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 C 0.51 7.55 7.67 -10.98 -0.08 7.47 16 18 O -0.53 -10.20 15.61 5.56 0.09 -10.12 16 19 C -0.10 -1.04 3.91 -29.04 -0.11 -1.15 16 20 C -0.11 -1.15 4.38 -104.55 -0.46 -1.61 16 21 C -0.05 -0.45 9.68 -39.61 -0.38 -0.84 16 22 C -0.16 -1.47 10.02 -39.51 -0.40 -1.87 16 23 C 0.13 1.30 7.30 -39.42 -0.29 1.01 16 24 F -0.13 -1.41 17.27 2.25 0.04 -1.37 16 25 C -0.19 -2.03 10.01 -39.45 -0.39 -2.42 16 26 C 0.15 1.70 7.24 -39.43 -0.29 1.41 16 27 F -0.13 -1.61 16.56 2.25 0.04 -1.58 16 28 H 0.07 0.81 6.66 -51.93 -0.35 0.46 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.66 5.77 -51.93 -0.30 0.36 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.06 6.17 -51.93 -0.32 0.74 16 35 H 0.07 1.35 6.43 -51.93 -0.33 1.02 16 36 H 0.07 1.54 7.42 -51.93 -0.39 1.15 16 37 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.05 1.06 5.34 -51.93 -0.28 0.79 16 39 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 40 H 0.04 1.09 7.34 -51.93 -0.38 0.71 16 41 H 0.00 0.01 8.03 -51.93 -0.42 -0.40 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 43 H 0.11 0.78 7.70 -51.93 -0.40 0.38 16 44 H 0.10 0.88 7.43 -51.92 -0.39 0.50 16 45 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.15 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -33.14 388.25 -7.92 -41.06 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.85 Total: -2.00 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.72 Total: 2.49 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.33 Total: -51.05 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.14 -7.92 -41.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332707488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.501 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds