Wall clock time and date at job start Sat Apr 11 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 117.00264 * 2 1 4 4 O 1.20828 * 119.99943 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00173 * 179.97438 * 3 2 1 6 6 N 1.46497 * 109.47038 * 179.97438 * 5 3 2 7 7 C 1.37100 * 119.99698 * 266.73659 * 6 5 3 8 8 H 1.07996 * 120.00348 * 42.16687 * 7 6 5 9 9 C 1.38949 * 119.99781 * 222.16222 * 7 6 5 10 10 N 1.31413 * 120.00319 * 26.38028 * 9 7 6 11 11 Si 1.86809 * 120.00005 * 206.37580 * 9 7 6 12 12 H 1.48492 * 109.46990 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46637 * 120.00164 * 11 9 7 14 14 H 1.48501 * 109.47139 * 239.99961 * 11 9 7 15 15 C 1.34774 * 120.00423 * 86.73758 * 6 5 3 16 16 O 1.21294 * 120.00166 * 184.23508 * 15 6 5 17 17 C 1.50706 * 119.99816 * 4.23502 * 15 6 5 18 18 C 1.53039 * 109.46006 * 197.51465 * 17 15 6 19 19 C 1.53187 * 109.31201 * 178.62854 * 18 17 15 20 20 N 1.46927 * 108.89500 * 54.56093 * 19 18 17 21 21 C 1.34781 * 120.62879 * 126.46273 * 20 19 18 22 22 O 1.21280 * 119.99640 * 185.57916 * 21 20 19 23 23 C 1.50694 * 120.00061 * 5.58200 * 21 20 19 24 24 C 1.52998 * 109.47337 * 68.48528 * 23 21 20 25 25 C 1.52999 * 109.47051 * 188.48769 * 23 21 20 26 26 C 1.46961 * 118.71366 * 306.64231 * 20 19 18 27 27 C 1.53036 * 109.44852 * 77.44987 * 17 15 6 28 28 H 1.08997 * 109.47590 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47609 * 300.00755 * 1 2 3 30 30 H 1.09005 * 109.46947 * 60.00180 * 1 2 3 31 31 H 1.08995 * 109.47243 * 59.99540 * 5 3 2 32 32 H 1.09000 * 109.46880 * 299.99823 * 5 3 2 33 33 H 0.96993 * 120.00434 * 184.97160 * 10 9 7 34 34 H 1.09001 * 109.45545 * 317.48513 * 17 15 6 35 35 H 1.08999 * 109.49813 * 58.67746 * 18 17 15 36 36 H 1.09005 * 109.51994 * 298.59364 * 18 17 15 37 37 H 1.09001 * 109.58728 * 174.42345 * 19 18 17 38 38 H 1.08998 * 109.58512 * 294.70297 * 19 18 17 39 39 H 1.09000 * 109.46935 * 308.48526 * 23 21 20 40 40 H 1.09000 * 109.47327 * 65.01730 * 24 23 21 41 41 H 1.08997 * 109.47251 * 185.02046 * 24 23 21 42 42 H 1.09000 * 109.46884 * 305.02121 * 24 23 21 43 43 H 1.09003 * 109.47484 * 59.99350 * 25 23 21 44 44 H 1.09004 * 109.47534 * 179.97438 * 25 23 21 45 45 H 1.09000 * 109.47053 * 299.99685 * 25 23 21 46 46 H 1.09000 * 109.46780 * 293.56632 * 26 20 19 47 47 H 1.09002 * 109.70832 * 173.28383 * 26 20 19 48 48 H 1.09002 * 109.49834 * 301.33192 * 27 17 15 49 49 H 1.09002 * 109.49624 * 61.39588 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2414 3.3170 -1.1859 8 1 3.5915 3.1642 -2.0347 9 6 5.3408 4.1596 -1.2954 10 7 6.3883 3.9770 -0.5232 11 14 5.3299 5.5522 -2.5406 12 1 4.0430 5.5437 -3.2814 13 1 5.4853 6.8490 -1.8340 14 1 6.4526 5.3711 -3.4956 15 6 4.1087 3.3455 1.1647 16 8 4.3775 4.5283 1.1610 17 6 3.9165 2.6205 2.4719 18 6 3.6790 3.6387 3.5895 19 6 3.4501 2.8971 4.9102 20 7 4.5820 1.9914 5.1496 21 6 5.2666 2.0396 6.3097 22 8 6.2597 1.3591 6.4564 23 6 4.7979 2.9389 7.4243 24 6 3.4791 2.4069 7.9887 25 6 5.8520 2.9688 8.5329 26 6 4.9555 1.0348 4.0983 27 6 5.1676 1.7973 2.7867 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 3.9565 0.7804 -0.8891 32 1 3.9557 0.7809 0.8909 33 1 7.1253 4.6070 -0.5484 34 1 3.0549 1.9572 2.3959 35 1 2.8013 4.2402 3.3532 36 1 4.5503 4.2871 3.6826 37 1 3.3790 3.6167 5.7258 38 1 2.5271 2.3204 4.8502 39 1 4.6475 3.9473 7.0386 40 1 3.6484 1.4358 8.4539 41 1 3.0947 3.1043 8.7329 42 1 2.7546 2.3014 7.1812 43 1 6.7916 3.3478 8.1308 44 1 5.5132 3.6197 9.3390 45 1 6.0023 1.9605 8.9185 46 1 4.1566 0.3043 3.9713 47 1 5.8771 0.5237 4.3769 48 1 5.3494 1.0883 1.9790 49 1 6.0252 2.4627 2.8866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339345932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:20 Heat of formation + Delta-G solvation = -148.765429 kcal Electronic energy + Delta-G solvation = -31910.750652 eV Core-core repulsion = 27645.504346 eV Total energy + Delta-G solvation = -4265.246306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.47675 -40.02043 -38.70361 -36.80235 -35.99455 -34.71998 -34.23069 -32.75935 -31.63159 -30.87181 -28.58277 -27.31509 -26.59381 -26.29257 -24.37859 -23.55170 -22.56048 -21.15882 -20.47118 -19.29723 -18.51429 -17.33377 -17.24838 -16.95405 -16.39688 -16.01385 -15.82209 -15.45092 -15.33406 -14.83693 -14.27551 -14.18909 -14.13170 -13.93962 -13.54883 -13.16905 -13.12161 -13.07873 -12.85279 -12.60682 -12.44071 -12.23425 -12.09511 -11.89383 -11.77714 -11.60063 -11.49827 -11.31688 -11.25872 -11.09442 -10.90677 -10.83546 -10.69546 -10.52311 -10.38917 -10.26419 -10.16596 -10.04574 -9.57226 -8.82470 -8.59553 -8.17950 -7.36940 -6.24337 -3.92799 2.67920 2.68942 2.99178 3.04206 3.30682 3.43102 3.44945 4.06077 4.32509 4.41006 4.69490 4.73251 4.82812 4.86065 5.10869 5.14546 5.21890 5.22160 5.24792 5.29180 5.30975 5.39784 5.41382 5.41915 5.50315 5.57549 5.61888 5.64641 5.67653 5.74196 5.75654 5.85982 5.89832 5.98336 5.99299 6.09510 6.14351 6.18201 6.29808 6.52381 6.66722 6.69779 6.71846 7.46673 7.58154 8.11123 8.23414 8.26720 8.91831 9.03047 9.52463 10.10579 10.84877 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.003970 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.383209 B = 7051.509182 C = 8751.281272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.432 3.568 4 O -0.490 6.490 5 C 0.111 3.889 6 N -0.437 5.437 7 C -0.353 4.353 8 H 0.077 0.923 9 C 0.084 3.916 10 N -0.832 5.832 11 Si 0.904 3.096 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.286 1.286 15 C 0.500 3.500 16 O -0.532 6.532 17 C -0.103 4.103 18 C -0.112 4.112 19 C 0.106 3.894 20 N -0.608 5.608 21 C 0.519 3.481 22 O -0.546 6.546 23 C -0.117 4.117 24 C -0.145 4.145 25 C -0.131 4.131 26 C 0.112 3.888 27 C -0.120 4.120 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 -7.818 12.355 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.286 6.286 3 C 0.272 3.728 4 O -0.375 6.375 5 C -0.016 4.016 6 N -0.159 5.159 7 C -0.479 4.479 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.465 5.465 11 Si 0.731 3.269 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.213 1.213 15 C 0.287 3.713 16 O -0.409 6.409 17 C -0.125 4.125 18 C -0.151 4.151 19 C -0.016 4.016 20 N -0.341 5.341 21 C 0.307 3.693 22 O -0.423 6.423 23 C -0.139 4.139 24 C -0.203 4.203 25 C -0.189 4.189 26 C -0.010 4.010 27 C -0.159 4.159 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.182 -7.216 12.424 16.063 hybrid contribution -0.389 0.756 -0.781 1.154 sum -7.571 -6.460 11.643 15.317 Atomic orbital electron populations 1.23129 0.77698 1.02851 1.02191 1.86541 1.22504 1.34678 1.84868 1.25455 0.93743 0.81079 0.72550 1.90667 1.66803 1.36269 1.43750 1.21197 0.85375 0.89743 1.05248 1.43000 1.61069 1.05548 1.06271 1.18927 1.09123 1.29783 0.90023 0.90495 1.25064 0.92693 0.98161 0.96724 1.69936 1.04517 1.33097 1.38995 0.86302 0.77836 0.82604 0.80182 1.19500 1.20531 1.21285 1.19754 0.80507 0.87149 0.83858 1.90514 1.48572 1.15636 1.86188 1.21254 0.98260 0.97694 0.95314 1.21684 1.03740 0.97492 0.92142 1.21914 0.88444 0.92628 0.98663 1.48142 1.32655 1.37437 1.15895 1.20662 0.82740 0.82880 0.83002 1.90664 1.25394 1.44930 1.81312 1.21312 0.97689 0.99768 0.95086 1.21837 0.95224 1.01738 1.01458 1.21607 0.97932 1.02585 0.96776 1.21673 1.01633 0.90944 0.86764 1.21864 0.98213 0.99482 0.96301 0.88725 0.92407 0.92306 0.86732 0.88336 0.92449 0.91170 0.90398 0.90359 0.89546 0.91426 0.88610 0.92090 0.91468 0.91785 0.92115 0.92189 0.91864 0.91655 0.88898 0.90067 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.50 10.56 -39.25 -0.41 -5.91 16 3 C 0.43 7.86 7.45 36.01 0.27 8.12 16 4 O -0.49 -10.66 16.12 -18.75 -0.30 -10.96 16 5 C 0.11 2.07 5.56 -5.19 -0.03 2.04 16 6 N -0.44 -10.52 2.03 -116.10 -0.24 -10.76 16 7 C -0.35 -9.59 9.12 -14.93 -0.14 -9.73 16 8 H 0.08 2.09 7.96 -52.49 -0.42 1.67 16 9 C 0.08 2.34 4.11 -17.47 -0.07 2.27 16 10 N -0.83 -23.78 12.32 55.50 0.68 -23.09 16 11 Si 0.90 22.04 29.63 -169.99 -5.04 17.00 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C 0.50 12.07 6.04 -10.98 -0.07 12.00 16 16 O -0.53 -15.14 14.16 5.55 0.08 -15.06 16 17 C -0.10 -1.86 1.64 -91.73 -0.15 -2.01 16 18 C -0.11 -1.81 4.77 -26.61 -0.13 -1.93 16 19 C 0.11 1.27 4.98 -3.71 -0.02 1.25 16 20 N -0.61 -8.24 2.98 -172.74 -0.51 -8.76 16 21 C 0.52 7.34 6.96 -10.99 -0.08 7.26 16 22 O -0.55 -9.57 15.40 5.56 0.09 -9.48 16 23 C -0.12 -1.22 2.40 -91.78 -0.22 -1.44 16 24 C -0.15 -1.19 8.85 37.16 0.33 -0.86 16 25 C -0.13 -1.33 8.53 37.16 0.32 -1.01 16 26 C 0.11 1.56 6.43 -3.69 -0.02 1.54 16 27 C -0.12 -2.00 5.06 -26.61 -0.13 -2.13 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 31 H 0.11 1.99 8.01 -51.93 -0.42 1.57 16 32 H 0.10 1.55 4.85 -51.93 -0.25 1.29 16 33 H 0.27 7.34 8.32 -40.82 -0.34 7.00 16 34 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.43 7.97 -51.93 -0.41 1.02 16 37 H 0.09 0.84 5.16 -51.93 -0.27 0.58 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.91 6.98 -51.93 -0.36 0.55 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.50 6.27 -51.93 -0.33 0.18 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.68 8.01 -51.93 -0.42 0.27 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.09 1.37 7.01 -51.93 -0.36 1.01 16 48 H 0.08 1.31 6.34 -51.93 -0.33 0.98 16 49 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -35.98 390.17 -6.55 -42.53 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -7.70 Total: 1.76 kcal Atomic # 6 Polarization: 15.92 SS G_CDS: 0.93 Total: 16.85 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.07 Total: -42.60 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.55 Total: -41.41 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.04 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.98 -6.55 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339345932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.236 kcal (2) G-P(sol) polarization free energy of solvation -35.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds