Wall clock time and date at job start Sat Apr 11 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46905 * 109.47259 * 203.78221 * 3 2 1 5 5 C 1.46904 * 110.99767 * 66.04435 * 4 3 2 6 6 C 1.38574 * 111.00438 * 190.00217 * 4 3 2 7 7 N 1.31219 * 126.37986 * 339.70368 * 6 4 3 8 8 N 1.28505 * 110.09964 * 180.02562 * 7 6 4 9 9 C 1.31216 * 109.96697 * 0.02562 * 8 7 6 10 10 C 1.47987 * 126.47082 * 180.02562 * 9 8 7 11 11 C 1.41010 * 126.25302 * 168.10377 * 10 9 8 12 12 N 1.30639 * 108.08622 * 180.02562 * 11 10 9 13 13 N 1.39996 * 108.58316 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.86914 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47252 * 305.02866 * 14 13 12 16 16 H 1.08002 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99984 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99900 * 0.27554 * 17 15 14 19 19 Si 1.86792 * 120.00026 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47204 * 60.00053 * 19 17 15 21 21 H 1.48498 * 109.47220 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47050 * 300.00012 * 19 17 15 23 23 C 1.34819 * 108.26231 * 0.26528 * 13 12 11 24 24 N 1.36647 * 126.38281 * 160.05880 * 6 4 3 25 25 C 1.46496 * 127.18148 * 359.97438 * 24 6 4 26 26 C 1.50703 * 109.47084 * 280.37472 * 25 24 6 27 27 C 1.31001 * 119.99840 * 98.88446 * 26 25 24 28 28 C 1.50698 * 119.99829 * 278.87854 * 26 25 24 29 29 H 4.40885 * 5.52185 * 180.02562 * 4 1 2 30 30 H 1.09002 * 109.47411 * 83.78469 * 3 2 1 31 31 H 1.09003 * 109.47830 * 323.78155 * 3 2 1 32 32 H 1.09001 * 109.46892 * 192.69238 * 5 4 3 33 33 H 1.08995 * 109.47221 * 312.70139 * 5 4 3 34 34 H 1.09004 * 109.46778 * 72.69575 * 5 4 3 35 35 H 1.08003 * 125.95634 * 359.97438 * 11 10 9 36 36 H 1.08994 * 109.47021 * 185.02715 * 14 13 12 37 37 H 1.09001 * 109.46644 * 65.02832 * 14 13 12 38 38 H 0.97004 * 119.99935 * 359.72787 * 18 17 15 39 39 H 1.07997 * 126.21637 * 179.74288 * 23 13 12 40 40 H 1.09001 * 109.46852 * 40.37043 * 25 24 6 41 41 H 1.08999 * 109.47553 * 160.37117 * 25 24 6 42 42 H 1.08001 * 119.99616 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.00115 * 359.97438 * 27 26 25 44 44 H 1.08995 * 109.47276 * 5.92245 * 28 26 25 45 45 H 1.09000 * 109.46855 * 125.91841 * 28 26 25 46 46 H 1.08994 * 109.47267 * 245.91789 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 1.2683 0.5585 5 6 2.7855 1.3867 1.9804 6 6 4.5018 1.3994 0.3705 7 7 5.3512 0.4283 0.1314 8 7 6.5399 0.9012 0.0101 9 6 6.5218 2.2040 0.1650 10 6 7.6867 3.1142 0.0977 11 6 7.6423 4.5220 0.0302 12 7 8.8704 4.9648 -0.0162 13 7 9.7413 3.8692 0.0188 14 6 11.2045 3.9343 -0.0147 15 6 11.6451 4.7142 -1.2267 16 1 10.9088 5.1203 -1.9045 17 6 12.9881 4.9092 -1.4702 18 7 13.8848 4.4100 -0.6478 19 14 13.5341 5.8751 -2.9729 20 1 12.9783 7.2505 -2.9061 21 1 15.0172 5.9412 -3.0068 22 1 13.0410 5.2010 -4.2008 23 6 9.0019 2.7436 0.0822 24 7 5.2169 2.5633 0.4062 25 6 4.7004 3.9127 0.6480 26 6 4.0824 4.4483 -0.6178 27 6 2.7841 4.3977 -0.7852 28 6 4.9580 5.0422 -1.6910 29 1 -1.0501 -0.0004 0.0000 30 1 3.0094 -0.1104 -1.0216 31 1 3.0098 -0.8283 0.6072 32 1 2.9536 2.4115 2.3118 33 1 1.7361 1.1273 2.1194 34 1 3.4077 0.7091 2.5652 35 1 6.7486 5.1284 0.0181 36 1 11.6121 2.9247 -0.0644 37 1 11.5669 4.4285 0.8868 38 1 13.6012 3.9080 0.1323 39 1 9.3804 1.7328 0.1177 40 1 3.9460 3.8775 1.4340 41 1 5.5174 4.5644 0.9575 42 1 2.3413 4.7812 -1.6925 43 1 2.1567 3.9718 -0.0162 44 1 6.0054 4.9029 -1.4237 45 1 4.7562 4.5460 -2.6403 46 1 4.7455 6.1070 -1.7853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341823613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:38 Heat of formation + Delta-G solvation = 233.129798 kcal Electronic energy + Delta-G solvation = -29018.005533 eV Core-core repulsion = 25141.213868 eV Total energy + Delta-G solvation = -3876.791665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.01157 -42.15900 -38.95858 -37.94178 -36.13985 -34.53284 -34.09486 -33.47633 -32.33901 -30.04173 -29.14121 -28.66603 -28.26437 -28.01925 -25.92007 -25.46010 -23.72629 -22.51314 -21.70076 -21.27189 -19.93630 -19.26908 -18.99055 -18.29369 -17.79676 -17.52920 -17.11209 -16.45148 -16.27422 -16.09010 -15.73767 -15.57849 -15.37110 -15.27296 -14.91830 -14.33767 -14.31021 -14.17409 -14.06282 -13.88309 -13.77102 -13.30336 -13.28601 -12.84452 -12.78136 -12.65150 -12.57532 -12.30579 -12.00422 -11.95887 -11.67609 -11.52730 -11.35210 -11.18023 -11.12206 -11.01793 -10.71479 -10.42957 -10.15706 -9.96037 -9.01171 -8.78083 -6.57540 0.28506 0.74956 1.00126 1.32212 1.44975 1.51695 1.56424 1.57826 1.79549 1.91080 1.93352 2.18612 2.48037 2.77979 3.00015 3.27819 3.44480 3.46485 3.60950 3.67744 3.73386 3.81470 4.03062 4.12809 4.19226 4.21565 4.38157 4.45152 4.51502 4.55699 4.56282 4.61270 4.74980 4.76097 4.79409 4.86462 4.92374 4.97759 5.07253 5.09127 5.34849 5.41421 5.49911 5.57899 5.59526 5.76924 5.79361 6.09566 6.14157 6.36067 6.67915 6.68250 7.17559 7.64627 8.57678 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.002492 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.622345 B =11233.130555 C =11874.685279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.222 4.222 3 C 0.184 3.816 4 N -0.445 5.445 5 C 0.023 3.977 6 C 0.357 3.643 7 N -0.346 5.346 8 N -0.322 5.322 9 C 0.286 3.714 10 C -0.199 4.199 11 C 0.052 3.948 12 N -0.308 5.308 13 N -0.336 5.336 14 C 0.254 3.746 15 C -0.621 4.621 16 H 0.049 0.951 17 C -0.018 4.018 18 N -0.922 5.922 19 Si 1.119 2.881 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.272 1.272 23 C 0.103 3.897 24 N -0.458 5.458 25 C 0.136 3.864 26 C -0.172 4.172 27 C -0.128 4.128 28 C -0.131 4.131 29 H 0.252 0.748 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.036 0.964 35 H 0.215 0.785 36 H 0.052 0.948 37 H 0.025 0.975 38 H 0.261 0.739 39 H 0.193 0.807 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.410 -2.736 4.291 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.223 4.223 3 C 0.059 3.941 4 N -0.170 5.170 5 C -0.123 4.123 6 C 0.000 4.000 7 N -0.190 5.190 8 N -0.162 5.162 9 C 0.019 3.981 10 C -0.214 4.214 11 C -0.135 4.135 12 N -0.128 5.128 13 N -0.114 5.114 14 C 0.135 3.865 15 C -0.659 4.659 16 H 0.068 0.932 17 C -0.218 4.218 18 N -0.558 5.558 19 Si 0.940 3.060 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.198 1.198 23 C -0.051 4.051 24 N -0.151 5.151 25 C 0.015 3.985 26 C -0.173 4.173 27 C -0.165 4.165 28 C -0.187 4.187 29 H 0.268 0.732 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.231 0.769 36 H 0.069 0.931 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.210 0.790 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.848 -2.148 2.986 27.098 hybrid contribution -1.636 -0.852 1.462 2.354 sum -28.483 -3.000 4.448 28.984 Atomic orbital electron populations 1.25703 0.96443 0.96928 0.98456 1.22569 0.93825 1.03206 1.02686 1.18677 0.85700 0.88493 1.01263 1.58707 1.02974 1.36211 1.19061 1.22686 1.03176 1.03269 0.83194 1.22376 0.91062 0.82863 1.03709 1.74412 0.96057 1.25354 1.23226 1.74251 1.14406 1.06030 1.21534 1.21578 0.83359 0.91373 1.01797 1.17229 0.88808 0.91518 1.23862 1.24585 0.96246 0.92796 0.99920 1.77311 0.99962 1.12064 1.23497 1.48941 1.07846 1.03120 1.51486 1.19533 0.70295 0.98649 0.98017 1.22247 0.95130 1.38470 1.10093 0.93248 1.27251 0.92562 0.97275 1.04749 1.70950 1.36752 1.34089 1.14018 0.82888 0.76129 0.75378 0.71654 1.19777 1.20173 1.19774 1.22878 0.90842 0.93670 0.97678 1.46282 1.06156 1.08586 1.54093 1.21328 1.01092 0.78508 0.97527 1.21680 0.96285 1.02873 0.96419 1.23979 0.94659 0.96082 1.01827 1.21044 0.99000 1.01684 0.97004 0.73164 0.89119 0.90648 0.89391 0.87740 0.94557 0.76864 0.93058 0.95672 0.92922 0.79046 0.85943 0.87465 0.87096 0.86654 0.92740 0.92406 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 19.25 74.32 1.43 -0.26 16 2 C -0.22 -3.44 12.28 31.12 0.38 -3.05 16 3 C 0.18 3.46 4.88 84.49 0.41 3.87 16 4 N -0.45 -8.39 4.75 -741.34 -3.52 -11.92 16 5 C 0.02 0.31 9.51 127.69 1.21 1.53 16 6 C 0.36 9.26 6.82 260.02 1.77 11.03 16 7 N -0.35 -11.37 11.47 -57.89 -0.66 -12.03 16 8 N -0.32 -11.73 12.21 -50.77 -0.62 -12.35 16 9 C 0.29 9.31 7.92 136.30 1.08 10.39 16 10 C -0.20 -6.88 6.06 -20.39 -0.12 -7.00 16 11 C 0.05 1.72 9.22 85.55 0.79 2.51 16 12 N -0.31 -13.05 12.36 -56.36 -0.70 -13.75 16 13 N -0.34 -14.89 3.66 -350.78 -1.28 -16.18 16 14 C 0.25 12.64 5.57 85.63 0.48 13.12 16 15 C -0.62 -34.42 9.23 25.60 0.24 -34.18 16 16 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 17 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 18 N -0.92 -53.31 13.65 21.45 0.29 -53.02 16 19 Si 1.12 49.06 29.90 68.60 2.05 51.11 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 C 0.10 3.93 11.40 83.86 0.96 4.89 16 24 N -0.46 -11.65 2.82 -520.57 -1.47 -13.12 16 25 C 0.14 2.44 5.87 85.63 0.50 2.94 16 26 C -0.17 -2.95 5.63 -16.49 -0.09 -3.04 16 27 C -0.13 -1.75 13.93 67.78 0.94 -0.81 16 28 C -0.13 -2.57 9.77 71.24 0.70 -1.87 16 29 H 0.25 0.63 7.80 -4.41 -0.03 0.60 16 30 H 0.09 1.96 8.04 -2.39 -0.02 1.94 16 31 H 0.08 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.09 0.93 6.55 -2.39 -0.02 0.92 16 33 H 0.10 1.07 6.96 -2.39 -0.02 1.05 16 34 H 0.04 0.57 8.07 -2.39 -0.02 0.55 16 35 H 0.22 5.43 3.86 -2.91 -0.01 5.42 16 36 H 0.05 2.49 7.93 -2.39 -0.02 2.48 16 37 H 0.03 1.31 8.01 -2.39 -0.02 1.30 16 38 H 0.26 14.91 7.22 -92.71 -0.67 14.24 16 39 H 0.19 6.60 8.06 -2.91 -0.02 6.57 16 40 H 0.12 1.52 6.33 -2.39 -0.02 1.51 16 41 H 0.11 1.90 5.05 -2.39 -0.01 1.89 16 42 H 0.11 1.35 8.05 -2.91 -0.02 1.32 16 43 H 0.12 1.33 7.95 -2.91 -0.02 1.31 16 44 H 0.05 1.30 4.34 -2.39 -0.01 1.29 16 45 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -71.33 391.36 6.33 -65.00 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.11 Total: 16.75 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 11.14 Total: -0.49 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -7.96 Total: -132.37 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -71.33 6.33 -65.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341823613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 298.125 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 226.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 233.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds