Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47334 * 239.99544 * 2 1 3 5 5 O 1.45205 * 109.46713 * 119.99727 * 2 1 3 6 6 C 1.34225 * 117.00026 * 60.00014 * 5 2 1 7 7 O 1.20824 * 120.00026 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99942 * 179.97438 * 6 5 2 9 9 C 1.53001 * 109.47298 * 180.02562 * 8 6 5 10 10 N 1.46504 * 109.47294 * 180.02562 * 9 8 6 11 11 C 1.34767 * 120.00102 * 179.97438 * 10 9 8 12 12 O 1.21354 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.49453 * 120.00157 * 179.97438 * 11 10 9 14 14 O 1.21343 * 119.99993 * 354.99052 * 13 11 10 15 15 N 1.34775 * 119.99888 * 175.27015 * 13 11 10 16 16 C 1.46504 * 119.99706 * 185.50973 * 15 13 11 17 17 C 1.53008 * 109.46955 * 183.69064 * 16 15 13 18 18 C 1.50701 * 115.54928 * 306.41002 * 17 16 15 19 19 H 1.08002 * 119.99634 * 145.10991 * 18 17 16 20 20 C 1.37875 * 120.00330 * 325.11820 * 18 17 16 21 21 N 1.31516 * 119.99968 * 349.44791 * 20 18 17 22 22 Si 1.86800 * 120.00208 * 169.45448 * 20 18 17 23 23 H 1.48495 * 109.47255 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47158 * 119.99561 * 22 20 18 25 25 H 1.48504 * 109.46678 * 239.99419 * 22 20 18 26 26 C 1.52995 * 117.49680 * 160.74331 * 17 16 15 27 27 C 1.52996 * 117.49927 * 92.08407 * 17 16 15 28 28 H 1.09007 * 109.47321 * 300.00586 * 1 2 3 29 29 H 1.08998 * 109.47236 * 60.00361 * 1 2 3 30 30 H 1.09005 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47131 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47235 * 299.99286 * 3 2 1 33 33 H 1.09000 * 109.47635 * 59.99928 * 3 2 1 34 34 H 1.09005 * 109.46903 * 300.00306 * 4 2 1 35 35 H 1.08998 * 109.46882 * 59.99878 * 4 2 1 36 36 H 1.08993 * 109.47303 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47324 * 60.00126 * 8 6 5 38 38 H 1.09005 * 109.47191 * 300.00010 * 8 6 5 39 39 H 1.08997 * 109.47052 * 59.99688 * 9 8 6 40 40 H 1.09005 * 109.46787 * 299.99987 * 9 8 6 41 41 H 0.97000 * 119.99937 * 359.97438 * 10 9 8 42 42 H 0.96998 * 120.00335 * 5.49933 * 15 13 11 43 43 H 1.08994 * 109.46955 * 303.69030 * 16 15 13 44 44 H 1.09000 * 109.47239 * 63.69225 * 16 15 13 45 45 H 0.96999 * 120.00319 * 185.02795 * 21 20 18 46 46 H 1.09004 * 117.50172 * 0.02562 * 26 17 16 47 47 H 1.09006 * 117.49733 * 145.01539 * 26 17 16 48 48 H 1.08996 * 117.49683 * 214.98053 * 27 17 16 49 49 H 1.08998 * 117.49786 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9683 1.3380 7 8 0.9558 -2.5024 0.5084 8 6 2.1181 -2.7436 2.5438 9 6 1.5714 -4.1709 2.4743 10 7 2.0228 -4.9244 3.6468 11 6 1.6606 -6.2134 3.7998 12 8 0.9601 -6.7500 2.9667 13 6 2.1216 -6.9823 4.9957 14 8 2.8949 -6.4757 5.7816 15 7 1.6827 -8.2404 5.1981 16 6 2.0372 -8.9505 6.4296 17 6 1.4945 -10.3798 6.3683 18 6 0.0218 -10.5038 6.0732 19 1 -0.3425 -11.3304 5.4812 20 6 -0.8603 -9.5620 6.5588 21 7 -0.4564 -8.6778 7.4447 22 14 -2.6291 -9.5418 5.9586 23 1 -2.8288 -10.6317 4.9699 24 1 -3.5449 -9.7436 7.1100 25 1 -2.9196 -8.2338 5.3183 26 6 2.1153 -11.4122 7.3114 27 6 2.4201 -11.4637 5.8122 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 1.7546 -2.2587 3.4498 38 1 3.2076 -2.7726 2.5593 39 1 1.9352 -4.6556 1.5683 40 1 0.4819 -4.1423 2.4586 41 1 2.5824 -4.4955 4.3130 42 1 1.1320 -8.6756 4.5287 43 1 3.1218 -8.9779 6.5338 44 1 1.6028 -8.4334 7.2851 45 1 -1.0930 -8.0624 7.8407 46 1 2.9101 -11.0731 7.9758 47 1 1.4587 -12.1813 7.7182 48 1 1.9639 -12.2666 5.2332 49 1 3.4155 -11.1585 5.4897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342287654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -139.134437 kcal Electronic energy + Delta-G solvation = -29518.325077 eV Core-core repulsion = 25253.496402 eV Total energy + Delta-G solvation = -4264.828675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22350 -40.06643 -38.14897 -37.50543 -36.68977 -35.39855 -34.46358 -33.16249 -32.20402 -31.24072 -27.81713 -27.78723 -26.98347 -25.71153 -25.14190 -22.80700 -21.68787 -21.23959 -20.16547 -19.64155 -19.37429 -18.00805 -17.58530 -16.81471 -16.78706 -16.30421 -16.12228 -15.64716 -15.02510 -14.96788 -14.73326 -14.55195 -14.28334 -14.26566 -13.99995 -13.74691 -13.34900 -13.03264 -12.88947 -12.62966 -12.57269 -12.38309 -12.31855 -12.25004 -11.99424 -11.80544 -11.66614 -11.59028 -11.54762 -11.16428 -11.03181 -10.79830 -10.77170 -10.51449 -10.33156 -10.29501 -9.66231 -9.19669 -9.18381 -9.00653 -8.87628 -8.33977 -8.02497 -6.11621 -4.20517 1.88170 1.96283 2.13098 2.93313 3.23415 3.34292 3.37066 3.80091 4.10088 4.27258 4.30192 4.33507 4.33733 4.45929 4.51072 4.64647 4.88481 5.01826 5.07067 5.13434 5.21330 5.28538 5.31373 5.43284 5.44663 5.46771 5.53796 5.59240 5.70483 5.85925 5.88964 5.95656 6.17135 6.24901 6.27688 6.48352 6.55166 6.64924 6.82683 6.99743 7.17031 7.25021 7.38239 7.47553 7.47803 7.85831 7.99950 8.26810 8.35114 8.76182 8.79913 9.41175 10.85923 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.002103 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.873306 B =13310.507280 C =14122.588682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.351 6.351 6 C 0.471 3.529 7 O -0.496 6.496 8 C -0.130 4.130 9 C 0.130 3.870 10 N -0.712 5.712 11 C 0.510 3.490 12 O -0.515 6.515 13 C 0.496 3.504 14 O -0.548 6.548 15 N -0.649 5.649 16 C 0.158 3.842 17 C 0.033 3.967 18 C -0.497 4.497 19 H 0.064 0.936 20 C 0.075 3.925 21 N -0.872 5.872 22 Si 0.892 3.108 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.280 1.280 26 C -0.193 4.193 27 C -0.211 4.211 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.412 0.588 42 H 0.413 0.587 43 H 0.035 0.965 44 H 0.115 0.885 45 H 0.263 0.737 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 18.987 -12.205 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.081 3.919 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.269 6.269 6 C 0.313 3.687 7 O -0.384 6.384 8 C -0.168 4.168 9 C 0.007 3.993 10 N -0.367 5.367 11 C 0.291 3.709 12 O -0.390 6.390 13 C 0.275 3.725 14 O -0.429 6.429 15 N -0.297 5.297 16 C 0.036 3.964 17 C 0.032 3.968 18 C -0.534 4.534 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.508 5.508 22 Si 0.719 3.281 23 H -0.195 1.195 24 H -0.210 1.210 25 H -0.206 1.206 26 C -0.231 4.231 27 C -0.248 4.248 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.248 0.752 42 H 0.250 0.750 43 H 0.053 0.947 44 H 0.133 0.867 45 H 0.074 0.926 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.737 18.990 -12.461 23.427 hybrid contribution -1.031 0.070 -0.294 1.075 sum 4.706 19.061 -12.755 23.412 Atomic orbital electron populations 1.22505 0.93866 1.04943 1.02839 1.22216 0.94520 0.92275 0.82915 1.21856 1.02256 0.92537 1.03137 1.22499 1.01716 1.03279 0.96612 1.86539 1.69826 1.25200 1.45291 1.23219 0.77525 0.80744 0.87208 1.90636 1.34813 1.69826 1.43110 1.21537 1.04388 0.94810 0.96043 1.21086 1.00769 0.88473 0.89007 1.45614 1.53800 1.11732 1.25561 1.20603 0.80632 0.82438 0.87221 1.90766 1.35718 1.68972 1.43495 1.19709 0.83204 0.83650 0.85953 1.90676 1.35544 1.69567 1.47065 1.45715 1.49343 1.12264 1.22415 1.21224 0.95570 0.92693 0.86930 1.19190 0.93248 0.86462 0.97860 1.20543 0.89140 1.09885 1.33838 0.91749 1.24977 0.98899 0.94761 0.94336 1.69829 1.34441 1.20358 1.26176 0.86527 0.84292 0.78388 0.78905 1.19495 1.20974 1.20621 1.22924 1.03214 1.05661 0.91344 1.22976 1.00068 1.04962 0.96798 0.91913 0.90976 0.89650 0.91421 0.90304 0.91401 0.89666 0.90977 0.91936 0.86659 0.86690 0.90044 0.90041 0.75167 0.75010 0.94691 0.86720 0.92636 0.91406 0.90066 0.90438 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.37 37.16 0.31 -1.15 16 2 C 0.12 0.91 1.13 -90.62 -0.10 0.81 16 3 C -0.14 -0.77 8.85 37.15 0.33 -0.45 16 4 C -0.18 -1.42 8.37 37.16 0.31 -1.11 16 5 O -0.35 -3.20 9.89 -39.24 -0.39 -3.59 16 6 C 0.47 4.60 7.27 36.01 0.26 4.87 16 7 O -0.50 -6.06 11.48 -18.75 -0.22 -6.27 16 8 C -0.13 -1.02 5.93 -27.88 -0.17 -1.18 16 9 C 0.13 1.49 4.96 -4.04 -0.02 1.47 16 10 N -0.71 -9.54 5.55 -60.73 -0.34 -9.88 16 11 C 0.51 9.20 7.89 -11.59 -0.09 9.11 16 12 O -0.52 -10.55 16.49 5.49 0.09 -10.46 16 13 C 0.50 10.12 7.88 -11.58 -0.09 10.03 16 14 O -0.55 -11.72 16.48 5.50 0.09 -11.63 16 15 N -0.65 -14.23 5.27 -60.73 -0.32 -14.55 16 16 C 0.16 3.65 4.75 -4.04 -0.02 3.63 16 17 C 0.03 0.78 2.00 -155.66 -0.31 0.47 16 18 C -0.50 -12.71 8.27 -34.44 -0.28 -12.99 16 19 H 0.06 1.66 7.84 -52.49 -0.41 1.25 16 20 C 0.07 1.93 5.13 -17.82 -0.09 1.84 16 21 N -0.87 -23.13 10.75 55.43 0.60 -22.53 16 22 Si 0.89 20.62 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.19 -4.16 9.96 -26.70 -0.27 -4.43 16 27 C -0.21 -4.37 9.92 -26.70 -0.26 -4.63 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.86 5.89 -51.93 -0.31 0.56 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.84 5.89 -51.93 -0.31 0.53 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.41 4.73 7.95 -40.82 -0.32 4.41 16 42 H 0.41 9.25 7.41 -40.82 -0.30 8.95 16 43 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 44 H 0.12 2.97 6.04 -51.93 -0.31 2.65 16 45 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 47 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 48 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -30.19 406.89 -7.72 -37.92 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -7.85 Total: 12.97 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -0.49 Total: 6.29 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.06 Total: -46.95 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.42 Total: -31.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.19 -7.72 -37.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342287654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.215 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds