Wall clock time and date at job start Sat Apr 11 2020 06:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47046 * 2 1 4 4 C 1.52998 * 109.47334 * 239.99544 * 2 1 3 5 5 O 1.45205 * 109.46713 * 119.99727 * 2 1 3 6 6 C 1.34225 * 117.00026 * 60.00014 * 5 2 1 7 7 O 1.20824 * 120.00026 * 359.97438 * 6 5 2 8 8 C 1.50699 * 119.99942 * 179.97438 * 6 5 2 9 9 C 1.53001 * 109.47298 * 180.02562 * 8 6 5 10 10 N 1.46504 * 109.47294 * 180.02562 * 9 8 6 11 11 C 1.34767 * 120.00102 * 179.97438 * 10 9 8 12 12 O 1.21354 * 120.00305 * 359.97438 * 11 10 9 13 13 C 1.49453 * 120.00157 * 179.97438 * 11 10 9 14 14 O 1.21343 * 119.99993 * 354.99052 * 13 11 10 15 15 N 1.34775 * 119.99888 * 175.27015 * 13 11 10 16 16 C 1.46504 * 119.99706 * 185.50973 * 15 13 11 17 17 C 1.53008 * 109.46955 * 183.69064 * 16 15 13 18 18 C 1.50701 * 115.54928 * 306.41002 * 17 16 15 19 19 H 1.08002 * 119.99634 * 145.10991 * 18 17 16 20 20 C 1.37875 * 120.00330 * 325.11820 * 18 17 16 21 21 N 1.31516 * 119.99968 * 349.44791 * 20 18 17 22 22 Si 1.86800 * 120.00208 * 169.45448 * 20 18 17 23 23 H 1.48495 * 109.47255 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47158 * 119.99561 * 22 20 18 25 25 H 1.48504 * 109.46678 * 239.99419 * 22 20 18 26 26 C 1.52995 * 117.49680 * 160.74331 * 17 16 15 27 27 C 1.52996 * 117.49927 * 92.08407 * 17 16 15 28 28 H 1.09007 * 109.47321 * 300.00586 * 1 2 3 29 29 H 1.08998 * 109.47236 * 60.00361 * 1 2 3 30 30 H 1.09005 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47131 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47235 * 299.99286 * 3 2 1 33 33 H 1.09000 * 109.47635 * 59.99928 * 3 2 1 34 34 H 1.09005 * 109.46903 * 300.00306 * 4 2 1 35 35 H 1.08998 * 109.46882 * 59.99878 * 4 2 1 36 36 H 1.08993 * 109.47303 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47324 * 60.00126 * 8 6 5 38 38 H 1.09005 * 109.47191 * 300.00010 * 8 6 5 39 39 H 1.08997 * 109.47052 * 59.99688 * 9 8 6 40 40 H 1.09005 * 109.46787 * 299.99987 * 9 8 6 41 41 H 0.97000 * 119.99937 * 359.97438 * 10 9 8 42 42 H 0.96998 * 120.00335 * 5.49933 * 15 13 11 43 43 H 1.08994 * 109.46955 * 303.69030 * 16 15 13 44 44 H 1.09000 * 109.47239 * 63.69225 * 16 15 13 45 45 H 0.96999 * 120.00319 * 185.02795 * 21 20 18 46 46 H 1.09004 * 117.50172 * 0.02562 * 26 17 16 47 47 H 1.09006 * 117.49733 * 145.01539 * 26 17 16 48 48 H 1.08996 * 117.49683 * 214.98053 * 27 17 16 49 49 H 1.08998 * 117.49786 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9683 1.3380 7 8 0.9558 -2.5024 0.5084 8 6 2.1181 -2.7436 2.5438 9 6 1.5714 -4.1709 2.4743 10 7 2.0228 -4.9244 3.6468 11 6 1.6606 -6.2134 3.7998 12 8 0.9601 -6.7500 2.9667 13 6 2.1216 -6.9823 4.9957 14 8 2.8949 -6.4757 5.7816 15 7 1.6827 -8.2404 5.1981 16 6 2.0372 -8.9505 6.4296 17 6 1.4945 -10.3798 6.3683 18 6 0.0218 -10.5038 6.0732 19 1 -0.3425 -11.3304 5.4812 20 6 -0.8603 -9.5620 6.5588 21 7 -0.4564 -8.6778 7.4447 22 14 -2.6291 -9.5418 5.9586 23 1 -2.8288 -10.6317 4.9699 24 1 -3.5449 -9.7436 7.1100 25 1 -2.9196 -8.2338 5.3183 26 6 2.1153 -11.4122 7.3114 27 6 2.4201 -11.4637 5.8122 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1391 36 1 3.1300 -0.7217 -1.2489 37 1 1.7546 -2.2587 3.4498 38 1 3.2076 -2.7726 2.5593 39 1 1.9352 -4.6556 1.5683 40 1 0.4819 -4.1423 2.4586 41 1 2.5824 -4.4955 4.3130 42 1 1.1320 -8.6756 4.5287 43 1 3.1218 -8.9779 6.5338 44 1 1.6028 -8.4334 7.2851 45 1 -1.0930 -8.0624 7.8407 46 1 2.9101 -11.0731 7.9758 47 1 1.4587 -12.1813 7.7182 48 1 1.9639 -12.2666 5.2332 49 1 3.4155 -11.1585 5.4897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342287654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:48 Heat of formation + Delta-G solvation = -158.423769 kcal Electronic energy + Delta-G solvation = -29519.161525 eV Core-core repulsion = 25253.496402 eV Total energy + Delta-G solvation = -4265.665123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98209 -41.54095 -39.68372 -38.44129 -38.30170 -36.58261 -35.12641 -34.81278 -34.14813 -32.22282 -28.60596 -28.39457 -28.30212 -27.54591 -26.41611 -24.07902 -22.93542 -22.53495 -21.37735 -21.20170 -20.58123 -19.57808 -18.43533 -18.06763 -17.70035 -17.61391 -17.33918 -16.98619 -16.65957 -16.35092 -16.10570 -15.85598 -15.43889 -15.21223 -15.04452 -14.87938 -14.59224 -14.51864 -14.33032 -13.61349 -13.43301 -13.38164 -13.18253 -13.11891 -12.93980 -12.93522 -12.88329 -12.74386 -12.73859 -12.66818 -12.37793 -12.30925 -12.18716 -12.04647 -11.44281 -11.41798 -11.09893 -11.06653 -10.71021 -10.60274 -10.40337 -10.16105 -9.81803 -8.07000 -6.20084 0.42990 1.14509 1.20015 1.37415 1.45215 1.51932 1.79812 2.24437 2.38990 2.78593 3.04515 3.42150 3.57170 3.69113 3.69824 3.77340 3.78855 3.94048 3.94717 4.22889 4.36859 4.50913 4.57583 4.58785 4.68239 4.71506 4.75091 4.75790 4.76968 4.81266 4.87398 4.89845 4.98293 5.06549 5.08594 5.12754 5.24542 5.27755 5.28445 5.47533 5.52448 5.56778 5.59786 5.89739 6.00407 6.35269 6.53401 6.74166 6.78486 6.85285 7.10108 7.42486 8.88343 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.002103 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.873306 B =13310.507280 C =14122.588682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.106 3.894 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.352 6.352 6 C 0.470 3.530 7 O -0.526 6.526 8 C -0.119 4.119 9 C 0.132 3.868 10 N -0.686 5.686 11 C 0.512 3.488 12 O -0.545 6.545 13 C 0.495 3.505 14 O -0.559 6.559 15 N -0.656 5.656 16 C 0.170 3.830 17 C 0.001 3.999 18 C -0.505 4.505 19 H 0.056 0.944 20 C 0.040 3.960 21 N -0.892 5.892 22 Si 0.939 3.061 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.288 1.288 26 C -0.189 4.189 27 C -0.188 4.188 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.424 0.576 42 H 0.410 0.590 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.261 0.739 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.032 20.434 -12.777 25.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.071 3.929 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.269 6.269 6 C 0.314 3.686 7 O -0.416 6.416 8 C -0.156 4.156 9 C 0.008 3.992 10 N -0.341 5.341 11 C 0.293 3.707 12 O -0.422 6.422 13 C 0.275 3.725 14 O -0.439 6.439 15 N -0.304 5.304 16 C 0.047 3.953 17 C 0.000 4.000 18 C -0.542 4.542 19 H 0.074 0.926 20 C -0.162 4.162 21 N -0.529 5.529 22 Si 0.766 3.234 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.214 1.214 26 C -0.228 4.228 27 C -0.225 4.225 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.263 0.737 42 H 0.246 0.754 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.781 20.477 -13.021 25.195 hybrid contribution -1.307 -0.339 -0.144 1.358 sum 5.474 20.137 -13.165 24.673 Atomic orbital electron populations 1.22480 0.94173 1.03496 1.03805 1.22490 0.94467 0.93481 0.82459 1.21873 1.02517 0.90787 1.04165 1.22469 1.01964 1.01991 0.97426 1.86536 1.69680 1.24753 1.45928 1.23515 0.76894 0.80987 0.87218 1.90647 1.36189 1.70428 1.44307 1.21494 1.05919 0.92056 0.96164 1.21122 1.00018 0.90409 0.87608 1.45487 1.52367 1.10135 1.26081 1.20186 0.80752 0.83632 0.86171 1.90759 1.37350 1.69892 1.44178 1.20110 0.82624 0.83291 0.86516 1.90658 1.35915 1.69643 1.47712 1.45700 1.49718 1.12967 1.22013 1.20932 0.95524 0.92358 0.86462 1.19267 0.92876 0.87383 1.00458 1.20709 0.90558 1.09547 1.33379 0.92560 1.25468 1.01420 0.94792 0.94555 1.69948 1.34968 1.20896 1.27055 0.85788 0.81419 0.77792 0.78427 1.19216 1.20672 1.21442 1.22930 1.03171 1.04470 0.92190 1.22978 1.00121 1.03284 0.96136 0.91654 0.89336 0.92216 0.91001 0.88529 0.91153 0.92164 0.89366 0.91449 0.84320 0.83856 0.90805 0.91572 0.73702 0.75429 0.93980 0.89647 0.92969 0.90008 0.90531 0.90004 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.37 71.98 0.60 -2.13 16 2 C 0.11 1.52 1.13 -10.80 -0.01 1.51 16 3 C -0.14 -1.18 8.85 71.98 0.64 -0.54 16 4 C -0.18 -2.61 8.37 71.98 0.60 -2.01 16 5 O -0.35 -5.87 9.89 -51.37 -0.51 -6.38 16 6 C 0.47 8.71 7.27 71.24 0.52 9.23 16 7 O -0.53 -12.95 11.48 21.97 0.25 -12.70 16 8 C -0.12 -1.61 5.93 29.85 0.18 -1.43 16 9 C 0.13 2.89 4.96 86.38 0.43 3.32 16 10 N -0.69 -17.49 5.55 -464.40 -2.58 -20.07 16 11 C 0.51 18.28 7.89 87.27 0.69 18.97 16 12 O -0.54 -22.44 16.49 -3.26 -0.05 -22.50 16 13 C 0.49 20.07 7.88 87.27 0.69 20.76 16 14 O -0.56 -23.49 16.48 -3.23 -0.05 -23.55 16 15 N -0.66 -28.86 5.27 -464.40 -2.45 -31.31 16 16 C 0.17 7.85 4.75 86.38 0.41 8.26 16 17 C 0.00 0.04 2.00 -52.93 -0.11 -0.07 16 18 C -0.50 -25.83 8.27 25.60 0.21 -25.62 16 19 H 0.06 2.91 7.84 -2.91 -0.02 2.88 16 20 C 0.04 2.05 5.13 84.65 0.43 2.49 16 21 N -0.89 -47.82 10.75 21.45 0.23 -47.59 16 22 Si 0.94 42.62 29.55 68.60 2.03 44.64 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 26 C -0.19 -7.92 9.96 30.62 0.30 -7.62 16 27 C -0.19 -7.46 9.92 30.62 0.30 -7.16 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.23 5.89 -2.38 -0.01 1.21 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 1.20 5.89 -2.38 -0.01 1.18 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.14 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.07 1.71 8.10 -2.38 -0.02 1.69 16 41 H 0.42 8.83 7.95 -92.71 -0.74 8.10 16 42 H 0.41 18.55 7.41 -92.71 -0.69 17.87 16 43 H 0.04 1.84 8.06 -2.39 -0.02 1.82 16 44 H 0.09 4.48 6.04 -2.39 -0.01 4.46 16 45 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 46 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 47 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 48 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 49 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -65.31 406.89 2.31 -63.00 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.45 Total: 38.49 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: 5.89 Total: 17.95 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -4.79 Total: -98.97 kcal Atomic # 8 Polarization: -64.76 SS G_CDS: -0.36 Total: -65.12 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -65.31 2.31 -63.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342287654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.420 kcal (2) G-P(sol) polarization free energy of solvation -65.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds